NO04G05230.3, NO04G05230.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G05230.3
Unique Name	NO04G05230.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3051
Alignment location	chr4:1467871..1471437 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1467871..1471437 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G05230.3 vs.
Match: EWM28906.1 (hypothetical protein Naga_101190g4 [Nannochloropsis gaditana])

HSP 1 Score: 209.5 bits (532), Expect = 1.400e-50
Identity = 96/127 (75.59%), Postives = 105/127 (82.68%), Query Frame = 0

Query:    1 MRPPALPNARLLWAFDFDGVLCHSAKELCLTGWAAAQEFWPSETQTWPKRPGPATLSSFYRVRPVVETGWEVMLINRALQEGEYSADTILKEYTASLRESLMKEYGGHAPEAYMDTFRSVRQAWMTR 128
            MRP   P ARLLWAFDFDGVLCHSAKELC+TGW AA+ FWPSE  +WP RP P  LSSF  VRPVVETGWE MLI RAL EGEYS +TILK+YTASLRE+L+KEYG + PEAYM+TFRSVRQ WM R
Sbjct:    1 MRPSVPPPARLLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWMNR 127

The following BLAST results are available for this feature:

BLAST of NO04G05230.3 vs.

BLAST of NO04G05230.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28906.1	1.400e-50	75.59	hypothetical protein Naga_101190g4 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G05230	NO04G05230	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05230.3	NO04G05230.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05230.3.cds1	NO04G05230.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05230.3.cds2	NO04G05230.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05230.3.cds3	NO04G05230.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05230.3.cds4	NO04G05230.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05230.3.cds5	NO04G05230.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1467871..1471437+
coding sequence from alignment at chr4:1467871..1471437+

mRNA sequence

>NO04G05230.3 ID=NO04G05230.3|Name=NO04G05230.3|organism=Nannochloropsis oceanica|type=mRNA|length=3051bp
AGTGAAGAAGGGGGAAGGGCTGTGGGTTCGTGTGTGGGGGGCCAGGCGAA
TGGGAGGGGAGGGAAGAGGAGTAAGTAAGGAGGGGACGGGGCAACTCACA
CGCCCCTGAGATTCGACTAGAGGGAAGCATGCCTTCCAGGGATGGCCAGC
GATGACAGAATTGAGAAAGGGGCTAGGCAAGGGCGGCCACACCTCATTCT
TTTCCGCTTCTCTTCCGTGCTGCCGTGTCGTGTGCTGCGGCCTGGTTGTT
GATTGTTGTTGTAGCTGTTGTCACCTCCCCACTGCTGATAGTGTTGCGTA
AGGGTTACTCTATATGGTTACTGAAGGATGCCTCGCGGTCCAAAGAGTGT
TTGGGATGGGCAACCAGAAGGCGGAAGAAGGAAGCCGCGCGCTTTGGTTG
TTGATTGTCACTTGCATTGCAGAAGCACTCAACAGCAGACAGGCAAAACG
AAAGATACATCGGGAGGGCGCGCTACCGGGACACACGGTCTCAAATAAAA
TAAACAAAGCCCATCGTGCGCCTATACATGCTATAATAGAGTGACAGGAT
ATCGATACTTGCCCAGGAGGGCACGCTAGTATTTACTCTGTTCTTCTCTA
GTATAAAACCACCTCATTTCTATCGTGTTTCTGCGCCCTTCTTCCTTAGT
GTTGAAGCTGGCCCAGGAATCTCGGCTGGCCCCTCCAAGCTCGCCGTCGC
CCCGGGCACAAGTAGGTGGGCGCAGTGTCGTCTTTCTTATGGTGGGCCCT
CCGTGTTTGCTTCAAGCCAATCAAGCTACCTTTTCAAGATTTGCACAAGA
TTTGTACAAATCCCATCTTCTCACATAACTACAAAAGCCGCACTCATCGT
CGGTTTACGTTGCCCCCACATACTCCAAAACCAGATAATCGACCTCCCCA
CCCCCACGAAGGGAAGCCACTCTGTGCTCTCTCGAGCAGTACAACCTCTG
CACTTCCCGTTCCTTTTTGTTTATATATCATTTCTTTCTTTCTCAGGCAT
GCCTGGCAACGTAGCCTCCGATATCTTCCCCAAATTTGCTTCTCATACTA
CATAGTGCTTATTAGCCATCACCGCTATCACATTCTGCCGGCAGCTCTGA
GAATGGGCCCTTCGCACACACACAGACTCATCCCTCGGCTCTGTCCCTCA
TTTTTCGACACCTACAGGTGACACTGCACTTGAGACACCTCCCATTTCAC
CTACCCACTCTTACTCTTTCCCTGCGCACCCACTCCCGACACCGCACAGC
CAAGACGGAAATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGG
CCTTCGACTTCGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTG
ACAGGATGGGCTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTG
GCCCAAAAGGCCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGAC
CCGTGGTTGAGACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAA
GAGGGAGAGTACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCT
TCGCGAGTCCCTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATA
TGGACACTTTTCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGG
GGCTGGCTCAGCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAA
GCACCTCCTCTCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCA
CTACGAAGGGGAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTG
GCAATGCCAGAATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGA
TGTGTTGCAGCAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAG
AGGGCAAGGAGAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGGTAC
GCGTGCACCTGTGTGTACGTGTGCTTTGACGACTGTTTTCTTCGTCCTTC
CCTCCATTTCAGTCCTCCATATCTGGTCTTCCGCGTCATTTACTCGGACC
ACTACCTCACCCCTCACATTCTCAGATCTCTCCCCTCCCTCCCGTCCCTC
TCTCTTTCCCGCCTAGTGTTATCTTTATCGAAGACCGGCTCCAAACCCTC
CTAGGCATCTTAGACCATCCTTCTCCCGACGTACGCGACCGAGCGGATCT
ACTCTTGGCAGGGTCAGAAGGGAGGGGTTGAGATAGGGAGGGAAGAAATA
GGAATGTGTGTGGAGGGGGGAGCTGTTTTTCAATCCATTCTTTATTCCTC
CCTCCCTCGCTACAGGCTAAAATATGCCCGCGCAAACACTTTCAGTTCCT
CTCATCCATTCCCTCCTTCCACCTTTCCCCTATTTCCTTTCTTTCTCCCA
CTCTTCCTTGGATTGAATAGCTGGGGTTACAACACAGCCGAAGAACGCGC
GGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAACCGAGCGAGCGT
TGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAAGGGTATTCTTGA
GGAGGAGGAGAAGAACGATTCGTGGCAAAACAGAACTAGGAGTAAAGGAA
TAAAAATGAGAAGAAATGGAACTAAAGTGGTCGTGGGCCCAGATTTTGAA
CCTTCTGCTATTTTAGTGTTGAACATGAAATGTCGCCCTCGACAACAACA
ACAACCAAATCCACAACAACAACTACAACTACAACAAAGATAGCGAGGAA
ATACTGTAAATTACTACGCTGCCCTTGCATTTCCCAAGCAAGCATCGAAT
GAGCAGATGACGCTGCTTTAAAAGATGAGGTTGGCAACCTTGTCCTTGGC
TGCAAATGGCAATGCCACTTCATCGTCCGACCTTGCAGGACCGCTTGATC
CGTACTTAGTCCATGCCACGTGTCGGGCTAGTACAATCAATATAATCCAT
AGCCAACAACATCCTCGGTTAGGCTGACACGACCTAATCCTAAAAGAATC
ATGTGCAACAGCATGGGTAGCAGCATGGGTAGCAGCATGGGTAGCAGCAT
G

protein sequence of NO04G05230.3

>NO04G05230.3-protein ID=NO04G05230.3-protein|Name=NO04G05230.3|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MRPPALPNARLLWAFDFDGVLCHSAKELCLTGWAAAQEFWPSETQTWPKR
PGPATLSSFYRVRPVVETGWEVMLINRALQEGEYSADTILKEYTASLRES
LMKEYGGHAPEAYMDTFRSVRQAWMTRDERGWLSENDFYPTAVSSIKHLL
SSHPPSSPSTYIVTTKGKEFTLKLLEGMGVAMPESCVFGLGSGKKVDVLQ
QLLDKYDAESKAREGKEKKEAKEGDMETRYACTCVYVCFDDCFLRPSLHF
SPPYLVFRVIYSDHYLTPHILRSLPSLPSLSLSRLVLSLSKTGSKPS*

mRNA from alignment at chr4:1467871..1471437+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G05230.3 ID=NO04G05230.3|Name=NO04G05230.3|organism=Nannochloropsis oceanica|type=mRNA|length=3567bp|location=Sequence derived from alignment at chr4:1467871..1471437+ (Nannochloropsis oceanica)
AGTGAAGAAGGGGGAAGGGCTGTGGGTTCGTGTGTGGGGGGCCAGGCGAA
TGGGAGGGGAGGGAAGAGGAGTAAGTAAGGAGGGGACGGGGCAACTCACA
CGCCCCTGAGATTCGACTAGAGGGAAGCATGCCTTCCAGGGATGGCCAGC
GATGACAGAATTGAGAAAGGGGCTAGGCAAGGGCGGCCACACCTCATTCT
TTTCCGCTTCTCTTCCGTGCTGCCGTGTCGTGTGCTGCGGCCTGGTTGTT
GATTGTTGTTGTAGCTGTTGTCACCTCCCCACTGCTGATAGTGTTGCGTA
AGGGTTACTCTATATGGTTACTGAAGGATGCCTCGCGGTCCAAAGAGTGT
TTGGGATGGGCAACCAGAAGGCGGAAGAAGGAAGCCGCGCGCTTTGGTTG
TTGATTGTCACTTGCATTGCAGAAGCACTCAACAGCAGACAGGCAAAACG
AAAGATACATCGGGAGGGCGCGCTACCGGGACACACGGTCTCAAATAAAA
TAAACAAAGCCCATCGTGCGCCTATACATGCTATAATAGAGTGACAGGAT
ATCGATACTTGCCCAGGAGGGCACGCTAGTATTTACTCTGTTCTTCTCTA
GTATAAAACCACCTCATTTCTATCGTGTTTCTGCGCCCTTCTTCCTTAGT
GTTGAAGCTGGCCCAGGAATCTCGGCTGGCCCCTCCAAGCTCGCCGTCGC
CCCGGGCACAAGTAGGTGGGCGCAGTGTCGTCTTTCTTATGGTGGGCCCT
CCGTGTTTGCTTCAAGCCAATCAAGCTACCTTTTCAAGATTTGCACAAGA
TTTGTACAAATCCCATCTTCTCACATAACTACAAAAGCCGCACTCATCGT
CGGTTTACGTTGCCCCCACATACTCCAAAACCAGATAATCGACCTCCCCA
CCCCCACGAAGGGAAGCCACTCTGTGCTCTCTCGAGCAGTACAACCTCTG
CACTTCCCGTTCCTTTTTGTTTATATATCATTTCTTTCTTTCTCAGGCAT
GCCTGGCAACGTAGCCTCCGATATCTTCCCCAAATTTGCTTCTCATACTA
CATAGTGCTTATTAGCCATCACCGCTATCACATTCTGCCGGCAGCTCTGA
GAATGGGCCCTTCGCACACACACAGACTCATCCCTCGGCTCTGTCCCTCA
TTTTTCGACACCTACAGGTGACACTGCACTTGAGACACCTCCCATTTCAC
CTACCCACTCTTACTCTTTCCCTGCGCACCCACTCCCGACACCGCACAGC
CAAGACGGAAATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGG
CCTTCGACTTCGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTG
ACAGGATGGGCTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTG
GCCCAAAAGGTGGGTGGTCTCGAGGAGAGGGGGAAAGGAAGGGATTGAAG
GAGGCATGATGAACCAACTTATCGCGCGACAGAGTTAAATGAATTATGTG
GCGGCTTTTCTTAACACCACATGTTCCTAAATCCGCTTCTTCCCTCGTTT
TCTTCCGGCCTTCCAGGCCCGGCCCCGCCACCCTCTCCTCCTTCTACCGA
GTGCGACCCGTGGTTGAGACGGGCTGGGAGGTCATGCTCATCAACCGTGC
ACTGCAAGAGGGAGAGTACTCTGCCGACACCATCCTGAAGGAGTATACGG
TATGCGCAACCCTACCCCTGCCCCTCCCTCCTGGTCTTTTTCCGTCACTT
CCTGAAGAGTCATCTCTCTCGTTCGGCTATCTTTTAGAATTATTCTTTTT
ATTTTTCATCCCCCTCATTACTTTCATCCCCTCCTTGCCTGCCCTCTTTC
CAGGCTTCCCTTCGCGAGTCCCTCATGAAGGAATACGGCGGTCATGCTCC
AGAAGCCTATATGGACACTTTTCGGTCCGTTCGACAGGCGTGGATGACTA
GGTAAGTAGGTAGGGAGGGAGGGAAGATGAGCCAATCATTGCACCCTGGG
TTCAAATTTTATTTCTATCCCTTTCTCCTTTCCTCTGTCCAACCGACATC
CTTCAACCTTAGAGATGAGAGGGGCTGGCTCAGCGAGAACGATTTCTACC
CCACTGCCGTTTCCAGCATTAAGCACCTCCTCTCCTCCCATCCTCCTTCC
TCCCCATCTACGTACATCGTCACTACGAAGGGGAAGGAGTTCACCTTAAA
GCTGCTGGAGGGGATGGGGGTGGCAATGCCAGAATCATGTGTCTTTGGTT
TGGGCAGGTAGGGAGGGAAGGAGGGAGGGAGGGGATGTGGGAGACTGTAG
GACTTGCTCACATTTAACCCCCCCCCGACCTTTTATAATACCGAATGACA
GCGGGAAGAAAGTGGATGTGTTGCAGCAGCTTTTGGACAAGTATGATGCA
GAGAGCAAGGCCAGAGAGGGCAAGGAGAAAAAGGAAGCCAAAGAGGGAGA
CATGGAGACACGGTACGCGTGCACCTGTGTGTACGTGTGCTTTGACGACT
GTTTTCTTCGTCCTTCCCTCCATTTCAGTCCTCCATATCTGGTCTTCCGC
GTCATTTACTCGGACCACTACCTCACCCCTCACATTCTCAGATCTCTCCC
CTCCCTCCCGTCCCTCTCTCTTTCCCGCCTAGTGTTATCTTTATCGAAGA
CCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGACGTAC
GCGACCGAGCGGATCTACTCTTGGCAGGGTCAGAAGGGAGGGGTTGAGAT
AGGGAGGGAAGAAATAGGAATGTGTGTGGAGGGGGGAGCTGTTTTTCAAT
CCATTCTTTATTCCTCCCTCCCTCGCTACAGGCTAAAATATGCCCGCGCA
AACACTTTCAGTTCCTCTCATCCATTCCCTCCTTCCACCTTTCCCCTATT
TCCTTTCTTTCTCCCACTCTTCCTTGGATTGAATAGCTGGGGTTACAACA
CAGCCGAAGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTG
GAAACCGAGCGAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTT
GTAAGGGTATTCTTGAGGAGGAGGAGAAGAACGATTCGTGGCAAAACAGA
ACTAGGAGTAAAGGAATAAAAATGAGAAGAAATGGAACTAAAGTGGTCGT
GGGCCCAGATTTTGAACCTTCTGCTATTTTAGTGTTGAACATGAAATGTC
GCCCTCGACAACAACAACAACCAAATCCACAACAACAACTACAACTACAA
CAAAGATAGCGAGGAAATACTGTAAATTACTACGCTGCCCTTGCATTTCC
CAAGCAAGCATCGAATGAGCAGATGACGCTGCTTTAAAAGATGAGGTTGG
CAACCTTGTCCTTGGCTGCAAATGGCAATGCCACTTCATCGTCCGACCTT
GCAGGACCGCTTGATCCGTACTTAGTCCATGCCACGTGTCGGGCTAGTAC
AATCAATATAATCCATAGCCAACAACATCCTCGGTTAGGCTGACACGACC
TAATCCTAAAAGAATCATGTGCAACAGCATGGGTAGCAGCATGGGTAGCA
GCATGGGTAGCAGCATG

Coding sequence (CDS) from alignment at chr4:1467871..1471437+

>NO04G05230.3 ID=NO04G05230.3|Name=NO04G05230.3|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr4:1467871..1471437+ (Nannochloropsis oceanica)
ATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTT
CGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGG
CTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGG
CCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGA
GACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGT
ACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCC
CTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTT
TCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCA
GCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTC
TCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGG
GAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAG
AATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAG
CAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGA
GAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGGTACGCGTGCACCT
GTGTGTACGTGTGCTTTGACGACTGTTTTCTTCGTCCTTCCCTCCATTTC
AGTCCTCCATATCTGGTCTTCCGCGTCATTTACTCGGACCACTACCTCAC
CCCTCACATTCTCAGATCTCTCCCCTCCCTCCCGTCCCTCTCTCTTTCCC
GCCTAGTGTTATCTTTATCGAAGACCGGCTCCAAACCCTCCTAG

Synonyms

Publications