NO04G05170.2, NO04G05170.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G05170.2
Unique Name	NO04G05170.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2430
Alignment location	chr4:1439435..1443378 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1439435..1443378 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G05170.2 vs.
Match: XP_005853766.1 (hypothetical protein NGA_0472300 [Nannochloropsis gaditana CCMP526]; EKU22593.1 hypothetical protein NGA_0472300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 273.1 bits (697), Expect = 1.600e-69
Identity = 134/159 (84.28%), Postives = 145/159 (91.19%), Query Frame = 0

Query:  283 GGGGAGKADAVSYYTASGIAAVINFPLWKASAIGQSGFQLA---TLHPSLPPALPSYLTRYLAAMAPPYKGVLATWAGMCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQLCNMPIIRATITLQNPASPYQNTSEALQAIYSKGGIKV 439
            G GG GKADAVSYYTASGIAA+INFPLWKASAIGQSGFQLA   TLHP+ PPALP YL+RY AAMAPPYKGV ATWAGMCWARATIFYGSE+GKELL Q YGV GAWAGA+PAL TSTFVQLCNMPIIRATIT+QNPASPY+NT+EAL+AIY KGG+K+
Sbjct:    2 GIGGGGKADAVSYYTASGIAAIINFPLWKASAIGQSGFQLASTTTLHPTFPPALPPYLSRYFAAMAPPYKGVFATWAGMCWARATIFYGSERGKELLRQRYGVTGAWAGALPALVTSTFVQLCNMPIIRATITVQNPASPYRNTTEALRAIYKKGGVKM 160

The following BLAST results are available for this feature:

BLAST of NO04G05170.2 vs.

BLAST of NO04G05170.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005853766.1	1.600e-69	84.28	hypothetical protein NGA_0472300 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G05170	NO04G05170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05170.2	NO04G05170.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05170.2.cds1	NO04G05170.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05170.2.cds2	NO04G05170.2.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05170.2.cds3	NO04G05170.2.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05170.2.cds4	NO04G05170.2.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05170.2.cds5	NO04G05170.2.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05170.2.cds6	NO04G05170.2.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05170.2.cds7	NO04G05170.2.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1439435..1443378-
coding sequence from alignment at chr4:1439435..1443378-

mRNA sequence

>NO04G05170.2 ID=NO04G05170.2|Name=NO04G05170.2|organism=Nannochloropsis oceanica|type=mRNA|length=2430bp
ATGCCCAATGCCCATTTGAGGACGGATGTTACGTGCCCCATTGCCGTCCC
GAGACACGAACTGTTCACAGGTGTCACACCAATACAGTCCTCGGAAACGC
ATCGTCTCCCTCCTGCTCCTCCTCCTCTTCCCCCTTCTTCTTCTTCCTCT
TCCTCTTCTTCTTCTTCTTCTCCCTCTTCTTTTTCTTCTTCTCCTTCTTT
TTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTACTTCTTCTTCCTCTT
CCTCTTATTCTTCTTCCTCTTCTTCCTCTTTTACCTCTTCCTCTCCTCCT
TCTTCTTCTTGTTCGTCTTCTGCTTCCTCCTCTTCTTCTCCTCCTCCGCC
TCCTCCCCCTTCTCCCCCTCCTCCTCCACCTCCTCCTCCACCTCCTCCAC
CTCCTCCTCCTCCTTCTCCACCTCCTTCTCCTCCTTCTCCACCTCCTTCT
CCTCCTTCTCCTTCTGCCATTCTCGCAATTGGGTTTAGACGCTGCCCACA
ATCGAGACCACAGAGAGTGAGTTGGAAGCACTCCTCCGTCGGTCCCCTCC
TCTTGTGCTACATTCGGCCTAAGCGCAGCGACCGGAGTGAGAGTCTCACG
GGATTAGTCAGGTTTGAGAAGAAGGAGGATGCCGCGGCGGCCGTTACGAA
GCTGTGCGGAGAACGTCTGCATGACCGTGTCCTCAAGCCCGAGCTTATCA
ACCGTCCGTTTCTTTTCTTGGACGATAACGGCCGCCTGGTGGAGTCCAAG
GGAAGGGACCGAGAGAAGGACAAGGAGCGGAAGGCAGCGCTTAAGGCGGC
AGTTTGTAGGACCGCATACGAGGATAGCACTTCAGGAATGGGCGGAGGCG
GCGGTGGCGCTGGCAAGGCCGACGCTGTTTCCTACTACACAGCTTCCGGG
ATTGCCGCCGTCATCAACTTTCCACTATGGAAGGCCAGCGCCATCGGACA
ATCTGGCTTCCAGCTTGCGACCCTCCACCCCTCCCTCCCTCCCGCCCTCC
CTTCCTACCTCACCCGGTACCTAGCCGCCATGGCCCCGCCTTACAAGGGT
GTTTTGGCCACTTGGGCAGGCATGTGCTGGGCTCGTGCCACAATTTTCTA
CGGATCGGAGAAGGGGAAGGAGTTGTTGAGCCAGCACTACGGGGTGAAGG
GAGCTTGGGCCGGCGCCATCCCTGCCCTCTTCACCTCCACCTTCGTCCAG
CTCTGTAATATGCCAATCATTCGAGCCACCATCACGCTCCAGAACCCCGC
GTCTCCCTACCAGAATACCTCCGAGGCGCTGCAGGCCATCTATTCAAAGG
GAGGGATCAAGGTGGGTAGGGAGGGAGGAAGGGAGGGAGGAAACGAGGGA
GAAAGAAGGAGTGGTGGACGATTGAGAGGTTATGGATTTGTTCTGATGGC
ATTTGGACTCGGATGTAGCTGGCCTTAAAACAACATTGATTAGTTTTTAT
ATTTCTGCCTCACACGTGATGGGAACGGCTCAAAGTCCTCAAGCAATCTC
ATTGTCGCTCGCTGTTTTCGCATTTTTGCCTTCCTTTTTTCCCTCTCTCA
TTCCCTCCCTCCCTCCCTCAGGGCCTCTGGCTCGGGACCTCGGCAGGGAT
TATGAAGACAGTTCCGAAATATATGACGGCCGTGGTGGTCAAGGACAAGG
TAGGGATGGAGGGAGGGAGGGAGGAAAAGGGGGAGGAAGGGAAGGAGGGA
GAGGGGGAGGGAAAAGCCAGCCATGGAAAGGAGAAGGATCACAGCACCAC
ATGAAATGTGCGGGCATGGCTTGTGTAGATTTGAATCGACCAACACACCC
TCCCTCCTTGCTTCCCTCGGTCGCTCCCTCCCCCTTTCCCTCTCTCCTGG
CAGATGGAGGACTGGTTGGAGGAGGTTCCGGCTGACGCGGACAATCCTCG
CTCTCTCCTCGTCCAGCGTGCGGCCTTGAAAGCCGTTACTGCCGGCTTGG
CGGGCGCCGTGCTGACTAACCCGTTGGACGTGGTGAGGAACGAGTGCTTT
AAGCGGGAGCAGAGCCTTAGGCCGACCTTGCGGGGGCTGGTGGAGGAGGA
AGGGGCACGCTTCTTGTGGAGGGGGATGGGCAAGAACGTGGTGGCCGTGA
CGATCCCAGTGGCCGCCACCATCTTCCTCGCAGACATGATCGGAAGGGCC
CGGGGCTTGTAGCCCTAGGGAGGGAGGGTGTCACCGGGTTGTGTGTATTT
GTAGGGCATTTCCGCTGCTTTGCTCTTGCTGTCGAAAGAGGACGAGGGTG
GGAAAAGTAAGGAAGCAAGGGTTAAAAGAAGGCAAGAGGAAGGGAGGGAG
GGAGAGATGAAAAAGAGGAATGTAACAGTACCGGATAAAGGGATTGTGAG
ACCATCACTGATATGTCGGGCCTTCCATTAAATTGCAACATAGACAGCTG
TGGTCGCTTCCTCCTCCATATTGACAGTCG

protein sequence of NO04G05170.2

>NO04G05170.2-protein ID=NO04G05170.2-protein|Name=NO04G05170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MPNAHLRTDVTCPIAVPRHELFTGVTPIQSSETHRLPPAPPPLPPSSSSS
SSSSSSSPSSFSSSPSFSSSSSSSPSPSTSSSSSSYSSSSSSSFTSSSPP
SSSCSSSASSSSSPPPPPPPSPPPPPPPPPPPPPPPPPSPPPSPPSPPPS
PPSPSAILAIGFRRCPQSRPQRVSWKHSSVGPLLLCYIRPKRSDRSESLT
GLVRFEKKEDAAAAVTKLCGERLHDRVLKPELINRPFLFLDDNGRLVESK
GRDREKDKERKAALKAAVCRTAYEDSTSGMGGGGGGAGKADAVSYYTASG
IAAVINFPLWKASAIGQSGFQLATLHPSLPPALPSYLTRYLAAMAPPYKG
VLATWAGMCWARATIFYGSEKGKELLSQHYGVKGAWAGAIPALFTSTFVQ
LCNMPIIRATITLQNPASPYQNTSEALQAIYSKGGIKVGREGGREGGNEG
ERRSGGRLRGYGFVLMAFGLGCSWP*

mRNA from alignment at chr4:1439435..1443378-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G05170.2 ID=NO04G05170.2|Name=NO04G05170.2|organism=Nannochloropsis oceanica|type=mRNA|length=3944bp|location=Sequence derived from alignment at chr4:1439435..1443378- (Nannochloropsis oceanica)
ATGCCCAATGCCCATTTGAGGACGGTTTGTAGTTCTTTGGAGCGTTCCTA
CATCTCTCTAGAACTATCGCATGCAACCTGACGTCTTCGAGGACTTGCAT
ACGAGGGGGAGCCTTCCAACAAGAAATTGTTGTCATCCCTTATTTCCTTG
TCCGAGTTTTTCTAGCGACTTTGACAGGTTTTTTGACCTGGCAAAGTCCC
TGGACGGCCCACACAGGGCCAGGAGGAGAGGGGGAAGGAGGATAAAAGAG
GAGGTCAGCGGGAAGGCTACACATAGAGTGTCCCTATATCCTGCCGCGGT
TGACCAAACCGCAGATCATGGGGACGAGCTTCCCCTCGGACCATACTCCT
GTACACCCGTAGGATGTTACGTGCCCCATTGCCGTCCCGAGACACGAACT
GTTCACAGGTGTCACACCAATACAGTCCTCGGAAACGCATCGTCTCCCTC
CTGCTCCTCCTCCTCTTCCCCCTTCTTCTTCTTCCTCTTCCTCTTCTTCT
TCTTCTTCTCCCTCTTCTTTTTCTTCTTCTCCTTCTTTTTCTTCTTCTTC
TTCTTCTTCTCCTTCTCCTTCTACTTCTTCTTCCTCTTCCTCTTATTCTT
CTTCCTCTTCTTCCTCTTTTACCTCTTCCTCTCCTCCTTCTTCTTCTTGT
TCGTCTTCTGCTTCCTCCTCTTCTTCTCCTCCTCCGCCTCCTCCCCCTTC
TCCCCCTCCTCCTCCACCTCCTCCTCCACCTCCTCCACCTCCTCCTCCTC
CTTCTCCACCTCCTTCTCCTCCTTCTCCACCTCCTTCTCCTCCTTCTCCT
TCTGCCATTCTCGCAATTGGGTTTAGACGCTGCCCACAATCGAGGTGTAC
CTTTGTCTGTGGTTTGAGGAGGGGGGGGGGGGGGGGGGAAATAGAGAGGA
AGTGTGACGGCTCTAATGGAGGGTGTGGTGTTGTCCTTGGCATAATGGCA
AAATGTAAGTTGTATTTTCCTCACGTCCCTCTCTTCCTCCCTCCTTCTCT
CCCTCCCCATTTCCTCGTGCCCCTAGACCACAGAGAGTGAGTTGGAAGCA
CTCCTCCGTCGGTCCCCTCCTCTTGTGCTACATTCGGCCTAAGCGCAGCG
ACCGGAGTGAGAGTCTCACGGGATTAGTCAGGTTTGAGAAGAAGGAGGAT
GCCGCGGCGGCCGTTACGAAGCTGTGCGGGTGAGACGGGAGGGAGGAAGG
GAGGGAGGGAGGGAGGAAGGGAAGGAGAAAGGGAAGGAGGAAGGGAGATT
CTCCGCATGGCTGCTTGGTTGTTGATGTTTTTGACTGAATCTGCACACAA
ACTTTTCTTATTCCTCTCCCTCAGAGAACGTCTGCATGACCGTGTCCTCA
AGCCCGAGCTTATCAACCGTCCGTTTCTTTTCTTGGACGATAACGGCCGC
CTGGTGGAGTCCAAGGGAAGGGACCGAGAGAAGGACAAGGAGCGGAAGGC
AGCGCTTAAGGCGGCAGTTTGTAGGTAAATGGCCAAGTCTGGTGCACAAG
GGAAGAAGGTCGGCCCATACTGTTTTTCTTTTGGCGCGAAACGGCCACAT
GAACGGAATAGCCGGGCACTCCGAGACTCAATGTTCTTGTCCACCTTTCC
AGTTTAGCGGCCACACTTGCCCCCTCCCTCCGCCGGCATAATTTATCTGA
GGCCTGATGTGGTTGCTTAGTGCGTGTGAGAGTTGTGTGACCTTGGTAGG
GCAAGCGAGACGTTGCTGGATAAAGAACAACCAACACAAACTTTGCGATC
CTGATCTATTGGAAGCACGCCATTCTTTTTTTCCTCCTCATGTCCTCTCC
ACACGGCGTGCATTGACGTACAACACAGGACCGCATACGAGGATAGCACT
TCAGGAATGGGCGGAGGCGGCGGTGGCGCTGGCAAGGCCGACGCTGTTTC
CTACTACACAGCTTCCGGGGTAAGTTAATCCTTCTAGCAAAGTTTCTCTC
CCGCTCTGTTTCTCCCTTCAATGTATGACGACCCCTGACACTGTCCAATC
TCTCTGTTCCTCCATCCTTCCTAGATTGCCGCCGTCATCAACTTTCCACT
ATGGAAGGCCAGCGCCATCGGACAATCTGGCTTCCAGCTTGCGACCCTCC
ACCCCTCCCTCCCTCCCGCCCTCCCTTCCTACCTCACCCGGTACCTAGCC
GCCATGGCCCCGCCTTACAAGGGTGTTTTGGCCACTTGGGCAGGCATGTG
CTGGGCTCGTGCCACAATTTTCTACGGATCGGAGAAGGGGAAGGAGTTGT
TGAGCCAGCACTACGGGGTGAAGGGAGCTTGGGCCGGGTAAGGCAGGCAG
GGAGGGAGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAATGATGGGGG
AAATGGAAGGGCGCGTATAAATAGGCGTCGGCTGTTGATGCATAGGTATC
AGGACTATGATGTGAGCGAATGCACGTATTACAGAATGTTCAGCTGCCCC
AACATCTATCTGACACTTCCCTCCCTTCCTTCCTACCCCACGTTCCTTGC
CTTCATTCCTTCCCTCCCTCCCTCCCTCCCACCCTCCCACAGCGCCATCC
CTGCCCTCTTCACCTCCACCTTCGTCCAGCTCTGTAATATGCCAATCATT
CGAGCCACCATCACGCTCCAGAACCCCGCGTCTCCCTACCAGAATACCTC
CGAGGCGCTGCAGGCCATCTATTCAAAGGGAGGGATCAAGGTGGGTAGGG
AGGGAGGAAGGGAGGGAGGAAACGAGGGAGAAAGAAGGAGTGGTGGACGA
TTGAGAGGTTATGGATTTGTTCTGATGGCATTTGGACTCGGATGTAGCTG
GCCTTAAAACAACATTGATTAGTTTTTATATTTCTGCCTCACACGTGATG
GGAACGGCTCAAAGTCCTCAAGCAATCTCATTGTCGCTCGCTGTTTTCGC
ATTTTTGCCTTCCTTTTTTCCCTCTCTCATTCCCTCCCTCCCTCCCTCAG
GGCCTCTGGCTCGGGACCTCGGCAGGGATTATGAAGACAGTTCCGAAATA
TATGACGGCCGTGGTGGTCAAGGACAAGGTAGGGATGGAGGGAGGGAGGG
AGGAAAAGGGGGAGGAAGGGAAGGAGGGAGAGGGGGAGGGAAAAGCCAGC
CATGGAAAGGAGAAGGATCACAGCACCACATGAAATGTGCGGGCATGGCT
TGTGTAGATTTGAATCGACCAACACACCCTCCCTCCTTGCTTCCCTCGGT
CGCTCCCTCCCCCTTTCCCTCTCTCCTGGCAGATGGAGGACTGGTTGGAG
GAGGTTCCGGCTGACGCGGACAATCCTCGCTCTCTCCTCGTCCAGCGTGC
GGCCTTGAAAGCCGTTACTGCCGGCTTGGCGGGCGCCGTGCTGACTAACC
CGTTGGACGTGGTGAGGAACGAGTGCTTTAAGCGGGAGCAGAGCCTTAGG
CCGACCTTGCGGGGGCTGGTGGAGGAGGAAGGGGCACGCTTCTTGTGGAG
GGGGATGGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGTGGGGG
AAGCCAAGGCCAAAACCAAGTGACTAGATTTCAAATGATTCTTATCCACT
CGCTCTTCTTTCCCGCTCCCTCCCTCCCTCCCCCCTTGTCCAGGCAAGAA
CGTGGTGGCCGTGACGATCCCAGTGGCCGCCACCATCTTCCTCGCAGACA
TGATCGGAAGGGCCCGGGGCTTGTAGCCCTAGGGAGGGAGGGTGTCACCG
GGTTGTGTGTATTTGTAGGGCATTTCCGCTGCTTTGCTCTTGCTGTCGAA
AGAGGACGAGGGTGGGAAAAGTAAGGAAGCAAGGGTTAAAAGAAGGCAAG
AGGAAGGGAGGGAGGGAGAGATGAAAAAGAGGAATGTAACAGTACCGGAT
AAAGGGATTGTGAGACCATCACTGATATGTCGGGCCTTCCATTAAATTGC
AACATAGACAGCTGTGGTCGCTTCCTCCTCCATATTGACAGTCG

Coding sequence (CDS) from alignment at chr4:1439435..1443378-

>NO04G05170.2 ID=NO04G05170.2|Name=NO04G05170.2|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at chr4:1439435..1443378- (Nannochloropsis oceanica)
ATGCCCAATGCCCATTTGAGGACGGATGTTACGTGCCCCATTGCCGTCCC
GAGACACGAACTGTTCACAGGTGTCACACCAATACAGTCCTCGGAAACGC
ATCGTCTCCCTCCTGCTCCTCCTCCTCTTCCCCCTTCTTCTTCTTCCTCT
TCCTCTTCTTCTTCTTCTTCTCCCTCTTCTTTTTCTTCTTCTCCTTCTTT
TTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTACTTCTTCTTCCTCTT
CCTCTTATTCTTCTTCCTCTTCTTCCTCTTTTACCTCTTCCTCTCCTCCT
TCTTCTTCTTGTTCGTCTTCTGCTTCCTCCTCTTCTTCTCCTCCTCCGCC
TCCTCCCCCTTCTCCCCCTCCTCCTCCACCTCCTCCTCCACCTCCTCCAC
CTCCTCCTCCTCCTTCTCCACCTCCTTCTCCTCCTTCTCCACCTCCTTCT
CCTCCTTCTCCTTCTGCCATTCTCGCAATTGGGTTTAGACGCTGCCCACA
ATCGAGACCACAGAGAGTGAGTTGGAAGCACTCCTCCGTCGGTCCCCTCC
TCTTGTGCTACATTCGGCCTAAGCGCAGCGACCGGAGTGAGAGTCTCACG
GGATTAGTCAGGTTTGAGAAGAAGGAGGATGCCGCGGCGGCCGTTACGAA
GCTGTGCGGAGAACGTCTGCATGACCGTGTCCTCAAGCCCGAGCTTATCA
ACCGTCCGTTTCTTTTCTTGGACGATAACGGCCGCCTGGTGGAGTCCAAG
GGAAGGGACCGAGAGAAGGACAAGGAGCGGAAGGCAGCGCTTAAGGCGGC
AGTTTGTAGGACCGCATACGAGGATAGCACTTCAGGAATGGGCGGAGGCG
GCGGTGGCGCTGGCAAGGCCGACGCTGTTTCCTACTACACAGCTTCCGGG
ATTGCCGCCGTCATCAACTTTCCACTATGGAAGGCCAGCGCCATCGGACA
ATCTGGCTTCCAGCTTGCGACCCTCCACCCCTCCCTCCCTCCCGCCCTCC
CTTCCTACCTCACCCGGTACCTAGCCGCCATGGCCCCGCCTTACAAGGGT
GTTTTGGCCACTTGGGCAGGCATGTGCTGGGCTCGTGCCACAATTTTCTA
CGGATCGGAGAAGGGGAAGGAGTTGTTGAGCCAGCACTACGGGGTGAAGG
GAGCTTGGGCCGGCGCCATCCCTGCCCTCTTCACCTCCACCTTCGTCCAG
CTCTGTAATATGCCAATCATTCGAGCCACCATCACGCTCCAGAACCCCGC
GTCTCCCTACCAGAATACCTCCGAGGCGCTGCAGGCCATCTATTCAAAGG
GAGGGATCAAGGTGGGTAGGGAGGGAGGAAGGGAGGGAGGAAACGAGGGA
GAAAGAAGGAGTGGTGGACGATTGAGAGGTTATGGATTTGTTCTGATGGC
ATTTGGACTCGGATGTAGCTGGCCTTAA

Synonyms

Publications