NO04G05070.1, NO04G05070.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G05070.1
Unique Name	NO04G05070.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3095
Alignment location	chr4:1410517..1413611 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1410517..1413611 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G05070.1 vs.
Match: XP_001023987.2 (WW domain protein [Tetrahymena thermophila SB210]; EAS03742.2 WW domain protein (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 66.6 bits (161), Expect = 3.500e-7
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 0

Query:    1 MDTEKDKDLLWIAGQGYTAPLPKACGIFHMETEELGKTEGLRPYYLNLETGKSQWDDPIDTQMRKLYKTERQE 74
            MD E +K+LLWIA  G  APLP+       + EE+        YY N +TG+S+WD P D Q RKLY  E+ +
Sbjct:   38 MDLENEKELLWIARNGLKAPLPQGWKPCQTQDEEI--------YYFNFDTGESRWDHPCDEQFRKLYLEEKNK 102

The following BLAST results are available for this feature:

BLAST of NO04G05070.1 vs.

BLAST of NO04G05070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_001023987.2	3.500e-7	43.84	WW domain protein [Tetrahymena thermophila SB210];...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G05070	NO04G05070	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05070.1	NO04G05070.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05070.1.cds1	NO04G05070.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1410517..1413611-
coding sequence from alignment at chr4:1410517..1413611-

mRNA sequence

>NO04G05070.1 ID=NO04G05070.1|Name=NO04G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=3095bp
GCGAAGGCTTGCGCACGTTGCCTTTGCTTCCGTTGCCCACGCCAACGGAA
AATTATCGGCGAAGACCCCACCCCTAGGTGCCCAGCATGTAACCATGACA
TGACAAACTTGCTTATACGATCATAAATGTCATACCAGTGCCAATCCGGC
AAAATGTTTACCATCTCCTCTGTCCGTTTTCACAATGGGCGAGCGGCGGC
CCATCTTCTCCACCAGGAAAACTAAAAGTTTGCCAGGCCTTGCCCCGCTG
CCCCGATCGCTGCCTCTAACCCCAACACGACACCCCAACGTCATGCATCC
TACAAGACTTTTGAAGGCTTTTTGAGTCTGTCTCATCTCGATTCTCGCCG
GTGCCACACGCCTCACGGCTTCGACACTGTTGCCCTCCTATACCTTGCCC
AAAGTCCTCTCTGCTGCTGCCGCCCCCCGTCGTCGCCTGGAGAACAAGGC
TGAGGAAATCCTGTCATTACGAACCGGTGTCCTCGAGGCAGAGACAGGCA
TCCGAGCCAACCTTGGACGACATTTGCAACCAAGGCCGGTTGCCAGGCAT
GGACACGGAGAAGGACAAGGATCTGTTGTGGATTGCAGGGCAAGGCTACA
CGGCGCCTTTGCCCAAGGCGTGCGGTATTTTTCACATGGAAACGGAGGAA
TTGGGTAAAACAGAAGGATTGCGACCATATTATTTAAACCTCGAAACTGG
CAAGAGTCAATGGGACGATCCTATCGACACGCAAATGCGCAAGCTGTACA
AGACGGAGCGGCAAGAGAAGACGATGCGAGAATCGTTGGCTGCCCCGCAT
ACGACAAACAATCATGGCATTTATGCCTCATCGAAAAATCTGAAAATAAA
AAATAAGCCTTCCCAAAGAAGGAGCGTGAATGCTGCCGGCACCATCCAAT
CGGCGAGGGGTCAGCCGGTCTCTCCCCGCACGACGAGGACTTTTGCTTTG
AGGGCTGCCCGTGTCAAGGCCATTCAGGAATGTGCTATGACAGCAGTGAA
GGTTGTCTCATCATCGTCACTTCAGACGCCAAGCACCAGCCTTCCTTCTT
CCTTCCCATCCTCTTCCTTCTCAAGGCGGTCCTCATTCCCTCCATCTTCG
ATCAGATCAAGCACCACAAAGAGAGCCACACCAGAAAGGAGGCAAGCAAC
GGCCATGGGAGTCAGTCCGGTATCAGCCCAGACGACGATAGGTTCTCTCA
TTTTGTCAGACTGTAGCGCCTTTGGGGAAGGAGCGGAGACGATCAAACCC
ACCACCAGCAGCTGCACCAGCCAGAGTACCAGTAATAACGGTGCAGCACC
CCCAATGAGGATTAGAGGCGATGCAGGCATCTACTGCTCTCCCTCTATGG
CAGCTCTACTAACAGACAGGCTGGATGTGGAGATAAAAGAGTTCAGGGGC
TATCGCCAGACTTTTTCAAACCACGTACGTCTGACCAACCGCACAGGAGC
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGAGGA
GCAACAGCAGCAGCAGCAGCATGGTGGGCGATATTTCCTTACCTAACACG
ATCCAAAGCAAAAGGAGGGCAAGCAGACGGGAAAGGATAGTAGTAAAAGG
GGGAGCTGAAGAAGGCGAAGAAAAAGCAGCAGCAGAAGAAGAGAAAAGGG
TAAAAAAGAGCAGCAACACTTGCAGCTACTCCACCAGAGCGCAGATGCAG
GCTGAAGCAGAAGCGGCAGTTGCGCGGGCACTGCTTGAGAAAGCACGGTT
GGCCTCTGTGCGCTTGAGTAGTGAATCGACTCTTCTCGAAACACAACTGG
AAAAGCTAAGGGCACGTGGCAGCTGTCTTCAGGACGCTCTATACGTGGCA
CAGGGCCGGATAATTGAAGGCGGGAAGGAACGGATGAAAGAGGAGAAGGG
GGAGGAGGACGAAAAGGAGGTGAGAAGGTGGGACGATATGGAGCTAGTGC
GTGCCAAGGAGAGGGTGGCAGAGGGGCGGGATAAGCTCAAAAAGGATGTT
GCCATGTGCCAATCCATGCTGGCGGCCTCTATGAGGAGCTCCAGCAGCGG
CCTGATAGCTGTCTTGCCATCCTCCTCATCCTCCTCCTATCCCGTTCCTT
CCACTATCACTTCCTTTCCCTCTTTCTCCTCCCCCTTTTCTCCCTTCTCT
CCCTCCTCCCCCTTCCTATCCTCCTCTTTTTCGTCCCCTTCTTTTACTGC
TGCCGCCATTGACGCACCAGACCAGCCGTTGCAACGCCTGATAGAAGAGA
AGAAAGCCCCGTCACTTCAACTTTTCGCCGCTCAGCGCCTTAGTCGACAA
GAGCTACTGGAGCAGCAGCAGCAATGGGGCACCCCTCTCGAGGTCGACAT
GCAGCACCGCTTGGTTTCAAAAGGAAATGAAAAAAAGGCCAATCTAGACG
ACCAGAAACGGCTGCTCAAAGATAACTCCTGCTCCGATGCTCAACTCATG
GATTTACCCGAGGATGTGCGTGCGAAAGAAGTAGCTACACCATGCAAGGC
CGCGTTTCTGAGTTCGCCTTCAACCTCGTGGTCTCCTTCTAGTGCCTTGA
CCACAAGAACGCGACCAGCAAAAGAGGCTGCGTCCTATTCTATTTTGTCG
GCGGCGATCTCCCCTTCTACAGTCTTGGCGGCCTTGAACCGTCGGATGAA
GGATCAACAAATGTCCTTCTCCACCTCCTCCCCGTCTTCGTAATTATATT
CATCTCTTGCCTCGAAACAACGACTCAAGCAACTCGAGAAGGCATTGCTC
GAATTAAACGAAATGGAGTCAGAACTCAACGAGAACAGCCGCTTATTGAA
CCTGCCGAATAAAAATTGATGCCGAACGAAGAGGAGGCAGATGTGCCAAA
TTAGAGCGGAGGAGGGATGATGACGGTACGCAACGAAGATTATGTGAATG
GAAGGCAGGAGGAAAACGACAAAGAGAGAGAATGTGGTTGTCAAAAAGGA
TCGATGGCAAGAGTTGATCACGGCGCGGCCCCAAAAAAGGAGGGAGGTTG
TGTGAGAGTGGAGCGAGCAATAAAGATATCAAGCACGTGATAAAGAAGAT
CACAATTACATAATAAATAAATGCAAGAAATAATGTGTAAATGCC

protein sequence of NO04G05070.1

>NO04G05070.1-protein ID=NO04G05070.1-protein|Name=NO04G05070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=715bp
MDTEKDKDLLWIAGQGYTAPLPKACGIFHMETEELGKTEGLRPYYLNLET
GKSQWDDPIDTQMRKLYKTERQEKTMRESLAAPHTTNNHGIYASSKNLKI
KNKPSQRRSVNAAGTIQSARGQPVSPRTTRTFALRAARVKAIQECAMTAV
KVVSSSSLQTPSTSLPSSFPSSSFSRRSSFPPSSIRSSTTKRATPERRQA
TAMGVSPVSAQTTIGSLILSDCSAFGEGAETIKPTTSSCTSQSTSNNGAA
PPMRIRGDAGIYCSPSMAALLTDRLDVEIKEFRGYRQTFSNHVRLTNRTG
ASSSSSSSSSSSSSKRRSNSSSSSMVGDISLPNTIQSKRRASRRERIVVK
GGAEEGEEKAAAEEEKRVKKSSNTCSYSTRAQMQAEAEAAVARALLEKAR
LASVRLSSESTLLETQLEKLRARGSCLQDALYVAQGRIIEGGKERMKEEK
GEEDEKEVRRWDDMELVRAKERVAEGRDKLKKDVAMCQSMLAASMRSSSS
GLIAVLPSSSSSSYPVPSTITSFPSFSSPFSPFSPSSPFLSSSFSSPSFT
AAAIDAPDQPLQRLIEEKKAPSLQLFAAQRLSRQELLEQQQQWGTPLEVD
MQHRLVSKGNEKKANLDDQKRLLKDNSCSDAQLMDLPEDVRAKEVATPCK
AAFLSSPSTSWSPSSALTTRTRPAKEAASYSILSAAISPSTVLAALNRRM
KDQQMSFSTSSPSS*

mRNA from alignment at chr4:1410517..1413611-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G05070.1 ID=NO04G05070.1|Name=NO04G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=3095bp|location=Sequence derived from alignment at chr4:1410517..1413611- (Nannochloropsis oceanica)
GCGAAGGCTTGCGCACGTTGCCTTTGCTTCCGTTGCCCACGCCAACGGAA
AATTATCGGCGAAGACCCCACCCCTAGGTGCCCAGCATGTAACCATGACA
TGACAAACTTGCTTATACGATCATAAATGTCATACCAGTGCCAATCCGGC
AAAATGTTTACCATCTCCTCTGTCCGTTTTCACAATGGGCGAGCGGCGGC
CCATCTTCTCCACCAGGAAAACTAAAAGTTTGCCAGGCCTTGCCCCGCTG
CCCCGATCGCTGCCTCTAACCCCAACACGACACCCCAACGTCATGCATCC
TACAAGACTTTTGAAGGCTTTTTGAGTCTGTCTCATCTCGATTCTCGCCG
GTGCCACACGCCTCACGGCTTCGACACTGTTGCCCTCCTATACCTTGCCC
AAAGTCCTCTCTGCTGCTGCCGCCCCCCGTCGTCGCCTGGAGAACAAGGC
TGAGGAAATCCTGTCATTACGAACCGGTGTCCTCGAGGCAGAGACAGGCA
TCCGAGCCAACCTTGGACGACATTTGCAACCAAGGCCGGTTGCCAGGCAT
GGACACGGAGAAGGACAAGGATCTGTTGTGGATTGCAGGGCAAGGCTACA
CGGCGCCTTTGCCCAAGGCGTGCGGTATTTTTCACATGGAAACGGAGGAA
TTGGGTAAAACAGAAGGATTGCGACCATATTATTTAAACCTCGAAACTGG
CAAGAGTCAATGGGACGATCCTATCGACACGCAAATGCGCAAGCTGTACA
AGACGGAGCGGCAAGAGAAGACGATGCGAGAATCGTTGGCTGCCCCGCAT
ACGACAAACAATCATGGCATTTATGCCTCATCGAAAAATCTGAAAATAAA
AAATAAGCCTTCCCAAAGAAGGAGCGTGAATGCTGCCGGCACCATCCAAT
CGGCGAGGGGTCAGCCGGTCTCTCCCCGCACGACGAGGACTTTTGCTTTG
AGGGCTGCCCGTGTCAAGGCCATTCAGGAATGTGCTATGACAGCAGTGAA
GGTTGTCTCATCATCGTCACTTCAGACGCCAAGCACCAGCCTTCCTTCTT
CCTTCCCATCCTCTTCCTTCTCAAGGCGGTCCTCATTCCCTCCATCTTCG
ATCAGATCAAGCACCACAAAGAGAGCCACACCAGAAAGGAGGCAAGCAAC
GGCCATGGGAGTCAGTCCGGTATCAGCCCAGACGACGATAGGTTCTCTCA
TTTTGTCAGACTGTAGCGCCTTTGGGGAAGGAGCGGAGACGATCAAACCC
ACCACCAGCAGCTGCACCAGCCAGAGTACCAGTAATAACGGTGCAGCACC
CCCAATGAGGATTAGAGGCGATGCAGGCATCTACTGCTCTCCCTCTATGG
CAGCTCTACTAACAGACAGGCTGGATGTGGAGATAAAAGAGTTCAGGGGC
TATCGCCAGACTTTTTCAAACCACGTACGTCTGACCAACCGCACAGGAGC
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGAGGA
GCAACAGCAGCAGCAGCAGCATGGTGGGCGATATTTCCTTACCTAACACG
ATCCAAAGCAAAAGGAGGGCAAGCAGACGGGAAAGGATAGTAGTAAAAGG
GGGAGCTGAAGAAGGCGAAGAAAAAGCAGCAGCAGAAGAAGAGAAAAGGG
TAAAAAAGAGCAGCAACACTTGCAGCTACTCCACCAGAGCGCAGATGCAG
GCTGAAGCAGAAGCGGCAGTTGCGCGGGCACTGCTTGAGAAAGCACGGTT
GGCCTCTGTGCGCTTGAGTAGTGAATCGACTCTTCTCGAAACACAACTGG
AAAAGCTAAGGGCACGTGGCAGCTGTCTTCAGGACGCTCTATACGTGGCA
CAGGGCCGGATAATTGAAGGCGGGAAGGAACGGATGAAAGAGGAGAAGGG
GGAGGAGGACGAAAAGGAGGTGAGAAGGTGGGACGATATGGAGCTAGTGC
GTGCCAAGGAGAGGGTGGCAGAGGGGCGGGATAAGCTCAAAAAGGATGTT
GCCATGTGCCAATCCATGCTGGCGGCCTCTATGAGGAGCTCCAGCAGCGG
CCTGATAGCTGTCTTGCCATCCTCCTCATCCTCCTCCTATCCCGTTCCTT
CCACTATCACTTCCTTTCCCTCTTTCTCCTCCCCCTTTTCTCCCTTCTCT
CCCTCCTCCCCCTTCCTATCCTCCTCTTTTTCGTCCCCTTCTTTTACTGC
TGCCGCCATTGACGCACCAGACCAGCCGTTGCAACGCCTGATAGAAGAGA
AGAAAGCCCCGTCACTTCAACTTTTCGCCGCTCAGCGCCTTAGTCGACAA
GAGCTACTGGAGCAGCAGCAGCAATGGGGCACCCCTCTCGAGGTCGACAT
GCAGCACCGCTTGGTTTCAAAAGGAAATGAAAAAAAGGCCAATCTAGACG
ACCAGAAACGGCTGCTCAAAGATAACTCCTGCTCCGATGCTCAACTCATG
GATTTACCCGAGGATGTGCGTGCGAAAGAAGTAGCTACACCATGCAAGGC
CGCGTTTCTGAGTTCGCCTTCAACCTCGTGGTCTCCTTCTAGTGCCTTGA
CCACAAGAACGCGACCAGCAAAAGAGGCTGCGTCCTATTCTATTTTGTCG
GCGGCGATCTCCCCTTCTACAGTCTTGGCGGCCTTGAACCGTCGGATGAA
GGATCAACAAATGTCCTTCTCCACCTCCTCCCCGTCTTCGTAATTATATT
CATCTCTTGCCTCGAAACAACGACTCAAGCAACTCGAGAAGGCATTGCTC
GAATTAAACGAAATGGAGTCAGAACTCAACGAGAACAGCCGCTTATTGAA
CCTGCCGAATAAAAATTGATGCCGAACGAAGAGGAGGCAGATGTGCCAAA
TTAGAGCGGAGGAGGGATGATGACGGTACGCAACGAAGATTATGTGAATG
GAAGGCAGGAGGAAAACGACAAAGAGAGAGAATGTGGTTGTCAAAAAGGA
TCGATGGCAAGAGTTGATCACGGCGCGGCCCCAAAAAAGGAGGGAGGTTG
TGTGAGAGTGGAGCGAGCAATAAAGATATCAAGCACGTGATAAAGAAGAT
CACAATTACATAATAAATAAATGCAAGAAATAATGTGTAAATGCC

Coding sequence (CDS) from alignment at chr4:1410517..1413611-

>NO04G05070.1 ID=NO04G05070.1|Name=NO04G05070.1|organism=Nannochloropsis oceanica|type=CDS|length=2145bp|location=Sequence derived from alignment at chr4:1410517..1413611- (Nannochloropsis oceanica)
ATGGACACGGAGAAGGACAAGGATCTGTTGTGGATTGCAGGGCAAGGCTA
CACGGCGCCTTTGCCCAAGGCGTGCGGTATTTTTCACATGGAAACGGAGG
AATTGGGTAAAACAGAAGGATTGCGACCATATTATTTAAACCTCGAAACT
GGCAAGAGTCAATGGGACGATCCTATCGACACGCAAATGCGCAAGCTGTA
CAAGACGGAGCGGCAAGAGAAGACGATGCGAGAATCGTTGGCTGCCCCGC
ATACGACAAACAATCATGGCATTTATGCCTCATCGAAAAATCTGAAAATA
AAAAATAAGCCTTCCCAAAGAAGGAGCGTGAATGCTGCCGGCACCATCCA
ATCGGCGAGGGGTCAGCCGGTCTCTCCCCGCACGACGAGGACTTTTGCTT
TGAGGGCTGCCCGTGTCAAGGCCATTCAGGAATGTGCTATGACAGCAGTG
AAGGTTGTCTCATCATCGTCACTTCAGACGCCAAGCACCAGCCTTCCTTC
TTCCTTCCCATCCTCTTCCTTCTCAAGGCGGTCCTCATTCCCTCCATCTT
CGATCAGATCAAGCACCACAAAGAGAGCCACACCAGAAAGGAGGCAAGCA
ACGGCCATGGGAGTCAGTCCGGTATCAGCCCAGACGACGATAGGTTCTCT
CATTTTGTCAGACTGTAGCGCCTTTGGGGAAGGAGCGGAGACGATCAAAC
CCACCACCAGCAGCTGCACCAGCCAGAGTACCAGTAATAACGGTGCAGCA
CCCCCAATGAGGATTAGAGGCGATGCAGGCATCTACTGCTCTCCCTCTAT
GGCAGCTCTACTAACAGACAGGCTGGATGTGGAGATAAAAGAGTTCAGGG
GCTATCGCCAGACTTTTTCAAACCACGTACGTCTGACCAACCGCACAGGA
GCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGAG
GAGCAACAGCAGCAGCAGCAGCATGGTGGGCGATATTTCCTTACCTAACA
CGATCCAAAGCAAAAGGAGGGCAAGCAGACGGGAAAGGATAGTAGTAAAA
GGGGGAGCTGAAGAAGGCGAAGAAAAAGCAGCAGCAGAAGAAGAGAAAAG
GGTAAAAAAGAGCAGCAACACTTGCAGCTACTCCACCAGAGCGCAGATGC
AGGCTGAAGCAGAAGCGGCAGTTGCGCGGGCACTGCTTGAGAAAGCACGG
TTGGCCTCTGTGCGCTTGAGTAGTGAATCGACTCTTCTCGAAACACAACT
GGAAAAGCTAAGGGCACGTGGCAGCTGTCTTCAGGACGCTCTATACGTGG
CACAGGGCCGGATAATTGAAGGCGGGAAGGAACGGATGAAAGAGGAGAAG
GGGGAGGAGGACGAAAAGGAGGTGAGAAGGTGGGACGATATGGAGCTAGT
GCGTGCCAAGGAGAGGGTGGCAGAGGGGCGGGATAAGCTCAAAAAGGATG
TTGCCATGTGCCAATCCATGCTGGCGGCCTCTATGAGGAGCTCCAGCAGC
GGCCTGATAGCTGTCTTGCCATCCTCCTCATCCTCCTCCTATCCCGTTCC
TTCCACTATCACTTCCTTTCCCTCTTTCTCCTCCCCCTTTTCTCCCTTCT
CTCCCTCCTCCCCCTTCCTATCCTCCTCTTTTTCGTCCCCTTCTTTTACT
GCTGCCGCCATTGACGCACCAGACCAGCCGTTGCAACGCCTGATAGAAGA
GAAGAAAGCCCCGTCACTTCAACTTTTCGCCGCTCAGCGCCTTAGTCGAC
AAGAGCTACTGGAGCAGCAGCAGCAATGGGGCACCCCTCTCGAGGTCGAC
ATGCAGCACCGCTTGGTTTCAAAAGGAAATGAAAAAAAGGCCAATCTAGA
CGACCAGAAACGGCTGCTCAAAGATAACTCCTGCTCCGATGCTCAACTCA
TGGATTTACCCGAGGATGTGCGTGCGAAAGAAGTAGCTACACCATGCAAG
GCCGCGTTTCTGAGTTCGCCTTCAACCTCGTGGTCTCCTTCTAGTGCCTT
GACCACAAGAACGCGACCAGCAAAAGAGGCTGCGTCCTATTCTATTTTGT
CGGCGGCGATCTCCCCTTCTACAGTCTTGGCGGCCTTGAACCGTCGGATG
AAGGATCAACAAATGTCCTTCTCCACCTCCTCCCCGTCTTCGTAA

Synonyms

Publications