NO04G05040.1, NO04G05040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05040.1
Unique NameNO04G05040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr4:1403040..1405057 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1403040..1405057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05040.1 vs.
Match: CBJ27588.1 (2-cys peroxiredoxin [Ectocarpus siliculosus])

HSP 1 Score: 394.0 bits (1011), Expect = 4.800e-106
Identity = 211/388 (54.38%), Postives = 268/388 (69.07%), Query Frame = 0 
Query:    2 MLQSLAR-GTMLRRSIAAISATRSAALAASTMT-----------------------RAM-----GSVTYSPPAAKIGKPAPDFTAGAVIDGEITKLSLSDYRGKYVALLFYPKDHTFVCPTEIIAYSDAYQRFEEVGTKVIGISTDTEESHLSWIRTPRKKGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGTFLIDPEGVLQQITMNNLPVGRNVDETIRLIQAFQFVAKHGEVCPAGWKPGDKTMKADPEGSLEYFASGATEGIEADPLAGGPHVVTAKSGKHLKELLAKKGKVVLDFVAGWCGKCKQIMPFVNELSEMHAGEVTFVKVDTTEEALAEVVAEHGVSVLPAFHFFKDGKPFGAPIVGYKKTPLKDSVAALAKK 361
            M+ +L R GT   R++ A  A R AA AA ++T                       RAM      S+ Y  P+A I +PAP F A AV+DG+I  +S  DY+GK+V LLFYPKD TFVCPTEIIA+SD +  FE +G +V+GISTDTE+SHL+W R PRK+GGLGHM+IPLVAD TK I+ADYGVL+  +GIALRG F+I+PEG+L+Q+T+NNL +GR+VDET+RLIQA QF+AKHGEVCPAGWKPGDKTMK   + S+EYF+SGATE  E DPL  G  +V   S    K+ +  +   V+DFVA  CGKC+Q+MPFV ELSE    EVTF K DTTEEA++E+  + GV  LPAF F++ G+    P++GYKK  L+ +V  L KK
Sbjct:    1 MISTLRRAGTRAGRAVGASLAGRPAAAAAPSVTATWRDASPRSTASPVIGGPIAPARAMHTEQEASIFYPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYFSSGATES-EEDPLEAGDKMVVINSPNDFKD-VTSEALAVVDFVAPHCGKCRQMMPFVKELSE-EFPEVTFAKFDTTEEAISELSTDLGVEALPAFRFYRKGEEVVEPVMGYKKKKLRAAVEELQKK 385
The following BLAST results are available for this feature:
BLAST of NO04G05040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ27588.14.800e-10654.382-cys peroxiredoxin [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05040NO04G05040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05040.1NO04G05040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05040.1.cds1NO04G05040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05040.1.cds2NO04G05040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05040.1.cds3NO04G05040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05040.1.cds4NO04G05040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05040.1 ID=NO04G05040.1|Name=NO04G05040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ATGATGCTTCAGAGCCTTGCCCGCGGCACTATGCTTCGCCGCTCCATCGC
GGCCATATCGGCAACCCGTTCCGCTGCCTTGGCTGCCTCGACGATGACCC
GTGCCATGGGCTCAGTCACTTACTCGCCCCCTGCCGCAAAGATTGGCAAG
CCTGCGCCCGATTTCACTGCGGGCGCCGTTATCGACGGTGAAATCACGAA
GCTCTCGCTGTCGGACTACCGTGGGAAATATGTCGCATTGCTTTTTTATC
CCAAGGACCACACTTTTGTCTGCCCCACCGAGATCATCGCCTACTCAGAT
GCCTACCAGCGCTTCGAAGAGGTCGGCACGAAGGTTATTGGCATCTCGAC
AGATACGGAGGAGTCTCACTTGTCCTGGATCCGCACTCCCCGGAAGAAGG
GAGGGCTGGGGCACATGCAGATTCCTCTTGTTGCGGATGTGACGAAAACC
ATCGCCGCTGATTACGGTGTGTTGCTGGAGGACATCGGCATTGCCCTGCG
AGGGACATTTTTGATTGACCCAGAGGGAGTGCTGCAGCAGATTACAATGA
ACAATTTACCTGTAGGCCGGAACGTGGACGAGACAATTCGCTTGATCCAG
GCGTTCCAGTTTGTGGCGAAACATGGCGAGGTCTGTCCAGCAGGCTGGAA
GCCCGGTGACAAGACAATGAAGGCTGATCCGGAAGGCTCACTGGAGTACT
TCGCGTCAGGCGCGACAGAAGGGATCGAGGCCGATCCGTTGGCAGGCGGG
CCGCACGTGGTTACGGCCAAGAGCGGGAAGCACCTGAAGGAGCTGCTGGC
GAAGAAAGGCAAGGTGGTGCTGGACTTCGTGGCGGGGTGGTGCGGGAAAT
GCAAGCAGATCATGCCCTTTGTGAATGAGCTGAGCGAAATGCATGCGGGT
GAGGTGACTTTTGTCAAGGTGGACACGACGGAGGAGGCGCTTGCCGAAGT
AGTGGCGGAGCACGGGGTCTCCGTGCTGCCCGCCTTCCATTTCTTCAAGG
ACGGGAAGCCGTTTGGAGCCCCAATTGTGGGGTATAAGAAGACGCCGCTC
AAGGATTCAGTGGCGGCGTTGGCCAAGAAGTAA
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protein sequence of NO04G05040.1

>NO04G05040.1-protein ID=NO04G05040.1-protein|Name=NO04G05040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MMLQSLARGTMLRRSIAAISATRSAALAASTMTRAMGSVTYSPPAAKIGK
PAPDFTAGAVIDGEITKLSLSDYRGKYVALLFYPKDHTFVCPTEIIAYSD
AYQRFEEVGTKVIGISTDTEESHLSWIRTPRKKGGLGHMQIPLVADVTKT
IAADYGVLLEDIGIALRGTFLIDPEGVLQQITMNNLPVGRNVDETIRLIQ
AFQFVAKHGEVCPAGWKPGDKTMKADPEGSLEYFASGATEGIEADPLAGG
PHVVTAKSGKHLKELLAKKGKVVLDFVAGWCGKCKQIMPFVNELSEMHAG
EVTFVKVDTTEEALAEVVAEHGVSVLPAFHFFKDGKPFGAPIVGYKKTPL
KDSVAALAKK*
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mRNA from alignment at chr4:1403040..1405057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05040.1 ID=NO04G05040.1|Name=NO04G05040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2018bp|location=Sequence derived from alignment at chr4:1403040..1405057- (Nannochloropsis oceanica)
ATGATGCTTCAGAGCCTTGCCCGCGGCACTATGCTTCGCCGCTCCATCGC
GGCCATATCGGCAACCCGTTCCGCTGCCTTGGCTGCCTCGACGATGACCC
GTGCCATGGGCTCAGTCACTTACTCGCCCCCTGCCGCAAAGATTGGCAAG
CCTGCGCCCGATTTCACTGCGGTATGTGCGACAGTGATCGCGGCGTATAC
CATAGCTTGTTTTGAAACTCTTTGCAAGCTTGCGGCTTGAACTGAAACAG
TGGAGGCATCCGGCAATTTTTTATCTTCATCCTTTCGGCTACATAGCCCT
AACGGTGCTTTATTGTGTAAACGATTCCATTGCTTTCTTCCCTCAATTAT
TTAACGATTTGCCAAATGCCCCCTTTCTTTCCCCAATTTCTCTAGGGCGC
CGTTATCGACGGTGAAATCACGAAGCTCTCGCTGTCGGACTACCGTGGGA
AATATGTCGCATTGCTTTTTTATCCCAAGGACCACACTTTTGTCTGCCCG
TAAGTAACAACAATAGCGGCAGAGAGCACGGGTAAGGGTCGTTTCTCTGA
TGGTACAGCTCAAAATCTATAATTTCGATCGAATCGAAGTGAAACTACGC
ACAAAAGAGACAGCGAATTCCAGTCCTCGTCCGTTACGCGGAACCATGCA
TTGACAATCTCTGGTTCCAGAATAAGTCGTATCGAATGCCATACTGCCAT
ATCAGCGTTTTTTTAGTTCAAGTCGCGAATGATGATGATTTCCTGTATCT
ACCGTATCACACATGTTCCACTGCATGTCGAGCATACCCTGCCCGTTGCA
AAGCGGCCTACAAAACGATGTGTGGGAACCGTGTTAAAGATGATCGGTGT
CTGTCTCTCTTTATCCCTAAACCTTTCCCAATCGCCCCTCCCCTCCTCCC
CCAAGCACCGAGATCATCGCCTACTCAGATGCCTACCAGCGCTTCGAAGA
GGTCGGCACGAAGGTTATTGGCATCTCGACAGATACGGAGGAGTCTCACT
TGTCCTGGATCCGCACTCCCCGGAAGAAGGGAGGGCTGGGGCACATGCAG
ATTCCTCTTGTTGCGGATGTGACGAAAACCATCGCCGCTGATTACGGTGT
GTTGCTGGAGGACATCGGCATTGCCCTGCGAGGGACATTTTTGATTGACC
CAGAGGGAGTGCTGCAGCAGATTACAATGAACAATTTACCTGTAGGCCGG
AACGTGGACGAGACAATTCGCTTGATCCAGGCGTTCCAGTTTGTGGCGAA
ACATGGCGAGGTACGAAGGGGGGGAGGGAGGAAGGGAGGGAAGGAGGGAG
GGAGGGGGGTTGAGAGGGAGTGAGGAGTACAGGAGGGGGGCAGGGAGGGA
GGGGGGGAGGGAGAGGGGGGAAGGAGGGAAGGAGGGAAGGAGGAGTCCAG
GAGGGGATGAGGAACAGTTTTAGGGCGAGTTTGATCATTCTGGATGAGAA
TAAACCGTGGGTCGGCATCCTTTCTTAGACCACCAGCTTTCAGGAGGTCT
CCACCCTCATCCCTCCTCTCCTCCCTTCCTCCCTGCTTCGAAACACTCCC
CCTTTACTTCCCCAGGTCTGTCCAGCAGGCTGGAAGCCCGGTGACAAGAC
AATGAAGGCTGATCCGGAAGGCTCACTGGAGTACTTCGCGTCAGGCGCGA
CAGAAGGGATCGAGGCCGATCCGTTGGCAGGCGGGCCGCACGTGGTTACG
GCCAAGAGCGGGAAGCACCTGAAGGAGCTGCTGGCGAAGAAAGGCAAGGT
GGTGCTGGACTTCGTGGCGGGGTGGTGCGGGAAATGCAAGCAGATCATGC
CCTTTGTGAATGAGCTGAGCGAAATGCATGCGGGTGAGGTGACTTTTGTC
AAGGTGGACACGACGGAGGAGGCGCTTGCCGAAGTAGTGGCGGAGCACGG
GGTCTCCGTGCTGCCCGCCTTCCATTTCTTCAAGGACGGGAAGCCGTTTG
GAGCCCCAATTGTGGGGTATAAGAAGACGCCGCTCAAGGATTCAGTGGCG
GCGTTGGCCAAGAAGTAA
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Coding sequence (CDS) from alignment at chr4:1403040..1405057-

>NO04G05040.1 ID=NO04G05040.1|Name=NO04G05040.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr4:1403040..1405057- (Nannochloropsis oceanica)
ATGATGCTTCAGAGCCTTGCCCGCGGCACTATGCTTCGCCGCTCCATCGC
GGCCATATCGGCAACCCGTTCCGCTGCCTTGGCTGCCTCGACGATGACCC
GTGCCATGGGCTCAGTCACTTACTCGCCCCCTGCCGCAAAGATTGGCAAG
CCTGCGCCCGATTTCACTGCGGGCGCCGTTATCGACGGTGAAATCACGAA
GCTCTCGCTGTCGGACTACCGTGGGAAATATGTCGCATTGCTTTTTTATC
CCAAGGACCACACTTTTGTCTGCCCCACCGAGATCATCGCCTACTCAGAT
GCCTACCAGCGCTTCGAAGAGGTCGGCACGAAGGTTATTGGCATCTCGAC
AGATACGGAGGAGTCTCACTTGTCCTGGATCCGCACTCCCCGGAAGAAGG
GAGGGCTGGGGCACATGCAGATTCCTCTTGTTGCGGATGTGACGAAAACC
ATCGCCGCTGATTACGGTGTGTTGCTGGAGGACATCGGCATTGCCCTGCG
AGGGACATTTTTGATTGACCCAGAGGGAGTGCTGCAGCAGATTACAATGA
ACAATTTACCTGTAGGCCGGAACGTGGACGAGACAATTCGCTTGATCCAG
GCGTTCCAGTTTGTGGCGAAACATGGCGAGGTCTGTCCAGCAGGCTGGAA
GCCCGGTGACAAGACAATGAAGGCTGATCCGGAAGGCTCACTGGAGTACT
TCGCGTCAGGCGCGACAGAAGGGATCGAGGCCGATCCGTTGGCAGGCGGG
CCGCACGTGGTTACGGCCAAGAGCGGGAAGCACCTGAAGGAGCTGCTGGC
GAAGAAAGGCAAGGTGGTGCTGGACTTCGTGGCGGGGTGGTGCGGGAAAT
GCAAGCAGATCATGCCCTTTGTGAATGAGCTGAGCGAAATGCATGCGGGT
GAGGTGACTTTTGTCAAGGTGGACACGACGGAGGAGGCGCTTGCCGAAGT
AGTGGCGGAGCACGGGGTCTCCGTGCTGCCCGCCTTCCATTTCTTCAAGG
ACGGGAAGCCGTTTGGAGCCCCAATTGTGGGGTATAAGAAGACGCCGCTC
AAGGATTCAGTGGCGGCGTTGGCCAAGAAGTAA
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Synonyms
Publications