NO04G04710.1, NO04G04710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04710.1
Unique NameNO04G04710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2281
Alignment locationchr4:1281213..1283820 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1281213..1283820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04710.1 vs.
Match: XP_019245396.1 (PREDICTED: vignain-like [Nicotiana attenuata]; OIT03089.1 vignain [Nicotiana attenuata])

HSP 1 Score: 135.6 bits (340), Expect = 5.900e-28
Identity = 89/266 (33.46%), Postives = 129/266 (48.50%), Query Frame = 0 
Query:  378 LPASLDYRYKDANPYGVVAVTPVKQQGTCGSCWAFSAMGVVEGQVALQQSNSNSSSSSSSSSSSSSSSSSSGSSSSSSSSSKGISTVSLSAQQILDC-SEANQGCDGGSVSNALAYV-RENGLRTLHSYPYTQKPGTC---RGPNPVFAYAAGPAYLPSCPADIILQKALYYFGPISVSVKSNCPAFMAYSSGIFTPDQDCLPKEGEVTAEACAQEVDHAMVLVGYGQEEGGKTFWVLKNSWGTTWGEGGYMKMLRGAGREEGKCG 639
            +P S+D+R K A       VTPVK QG CGSCWAFS +  VEG   + Q  +N                                 VSLS Q+++DC +  NQGC+GG + NA  ++ ++ G+ T  +YPY  + G C   +  +PV +        P+    ++   A     P+SV+++++   F  YS G+FT D              C  E+DH + +VGYG    G  +W++KNSWG  WGE GY++M R    EEG CG
Sbjct:  126 VPPSVDWRKKGA-------VTPVKDQGKCGSCWAFSTVVAVEG---INQIKTNE-------------------------------LVSLSEQELVDCDTSQNQGCNGGLMDNAFEFIKKKGGINTEDNYPYMAEDGECDIQKRNSPVVSIDGHEDVPPNDEGSLLKAVANQ---PVSVAIQASGSDFQFYSEGVFTGD--------------CGTELDHGVAIVGYGTTLDGTKYWIVKNSWGPEWGEKGYIRMQREIDAEEGLCG 333
The following BLAST results are available for this feature:
BLAST of NO04G04710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_019245396.15.900e-2833.46PREDICTED: vignain-like [Nicotiana attenuata]; OIT... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04710NO04G04710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04710.1NO04G04710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04710.1.cds1NO04G04710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04710.1.cds2NO04G04710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04710.1.cds3NO04G04710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04710.1 ID=NO04G04710.1|Name=NO04G04710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2281bp
AGACAGGCCGCTGTCGAAGAAGCAAGCCCGCAGACATCCCAATTGTCGGG
GAGGGGACGCCCGTGAGAGATAGGGTTAGACACACATGACCAAGGAGGAA
GCGACTGAAATGCATCCTAGACGAAGCTTTCAGCATCAGCGGAAGCCGCA
ACAGCAGCAGCAATACACGTATCGACAACAACATCGCTCGAGCTGGGTGC
TGCTGCTGGCTATGTATGCCGTGGCTTTGCTTGTCCTTATCCCAACTGTC
ACGGCCCATAGGACTATGTCCGAACTGGATGAAGGGAGGCAAAACCAGCC
GGAGCTGTCGGTAGAAGTTGAAGAGACGATGGAAATTTTAGAAGAAGCTA
GGGAAAAGGCCTGGGACGGGGCTCAGGCTTTGATGGGCAACGAAGAGAGC
AGCGGAAATAAGGCTATGCCACCAACGACGGGAGCGGCAAGAGGGGAAGG
CAAGGAAGACGGAGGGGCTCCACATGCAGGGGGGAAAGGTCGTCCTCCTC
CTCGGCCTATGCCTGCTTCTGATAAAGGCAAGGAAGTAGAGGAGCATGCA
AGAAAGTACCATGAGCACCCACCGCAAAACGAGCCGTGGTGGTTGACGTC
GAGCAACCAGACAGCTGGAGCGGAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCCGGCCTGGAAGGGGGAGTGTGACGGGGAATGGGGATATGAAGGG
TACGCTCAAAAAGCAGGTAAGGGCTATGGCCGCGGTGGAGGAGGAAGCAG
CGGCGGGCCTGACGGAGAGAAAGAGGAGCTCCAGAAACGCTGCAGGCAGT
TCAACGAGTCTGTGGCGTACGTTCAGAGCTTCGAGAAGGCAAACCCCAAC
GCCGCGTTTAGGGTGGGCTTGAATAACATGAGTGATTGGACATCGGAGGA
GAAGCAGACGTTGCGGGGTTTGAAGGGGGGGATGGTGGCCGATAAGGAGA
AGATTTTGAATATGGAGGATATTGTAACGATAAAGAAGTTGATCTCTGGG
GATATCACATACGATGAGGTCTTTCCTACAACTACTGGTACGACAGCTGC
TTTTTCAATGGTCGATGAGACGGAAATCATCCTAAACGACGAGGGAAGAG
GGCGTCGCCGGGTGCAGAGCCGTGGCAATGAGTCTCCTCTCCCCTCCTCG
TCCTCCGCTTCCACAGCGCGCTCACTCCCTTCCTCGTCTTCCAGCTCTAC
AGTGCCAGCAGTGATCCTCCCTGCTTCCCTAGATTATCGATATAAAGACG
CTAATCCATATGGGGTCGTGGCAGTTACCCCTGTCAAGCAACAAGGGACG
TGTGGAAGCTGCTGGGCATTTTCCGCCATGGGCGTGGTCGAGGGCCAAGT
CGCATTGCAGCAATCCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGTAGTAGTGGTAGCAGCAGTAGCAGCAGT
AGCAGCAGCAAAGGTATATCGACCGTGAGTCTCTCCGCACAACAGATCCT
TGATTGTAGCGAGGCTAATCAGGGATGCGATGGAGGAAGTGTCAGTAATG
CTCTGGCTTACGTGCGCGAAAACGGACTGCGGACGCTTCATTCTTACCCT
TACACGCAGAAACCAGGTACATGCCGCGGCCCCAACCCTGTCTTCGCCTA
CGCTGCTGGTCCAGCTTACCTCCCTTCCTGCCCTGCCGATATTATCTTGC
AAAAAGCTTTGTATTACTTCGGTCCTATATCCGTGAGTGTGAAGAGCAAT
TGTCCCGCTTTCATGGCCTATAGCAGTGGCATTTTCACCCCTGATCAAGA
CTGCTTGCCGAAAGAGGGGGAGGTGACTGCAGAGGCATGTGCGCAGGAGG
TGGACCACGCGATGGTCTTGGTTGGCTACGGGCAGGAGGAAGGGGGGAAA
ACGTTTTGGGTGTTGAAAAATTCGTGGGGCACTACGTGGGGAGAGGGAGG
GTATATGAAGATGTTGAGGGGGGCAGGGAGGGAGGAAGGGAAGTGCGGGA
CGTCGTGTGTTGGAGTGCTTGCCATCACGGTGGTGCAGGGCTGGAACTTG
GTCCCGATGGAGGAGTGGACGAAGGAGGAGGAGGAGGGGGAGGACGGGCG
CTGGACAAGGTTCGAAATGTGTTGGAGACTGTGGATAAAAGGGTATTGGC
GTTAGGGTGCCTGTTGGGGAGTATCTTATTGCTTGGCTTGTTCTATTTTT
GCTGTGCTCGGAGGAGGAGGACAGCGAGGATGGCAGTATTACAGATGAAG
TTGGATAGGGAGAGGGCGCGGTGGGTGTAGG
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protein sequence of NO04G04710.1

>NO04G04710.1-protein ID=NO04G04710.1-protein|Name=NO04G04710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=690bp
MTKEEATEMHPRRSFQHQRKPQQQQQYTYRQQHRSSWVLLLAMYAVALLV
LIPTVTAHRTMSELDEGRQNQPELSVEVEETMEILEEAREKAWDGAQALM
GNEESSGNKAMPPTTGAARGEGKEDGGAPHAGGKGRPPPRPMPASDKGKE
VEEHARKYHEHPPQNEPWWLTSSNQTAGAEQQQQQQQQQQPAWKGECDGE
WGYEGYAQKAGKGYGRGGGGSSGGPDGEKEELQKRCRQFNESVAYVQSFE
KANPNAAFRVGLNNMSDWTSEEKQTLRGLKGGMVADKEKILNMEDIVTIK
KLISGDITYDEVFPTTTGTTAAFSMVDETEIILNDEGRGRRRVQSRGNES
PLPSSSSASTARSLPSSSSSSTVPAVILPASLDYRYKDANPYGVVAVTPV
KQQGTCGSCWAFSAMGVVEGQVALQQSNSNSSSSSSSSSSSSSSSSSSGS
SSSSSSSSKGISTVSLSAQQILDCSEANQGCDGGSVSNALAYVRENGLRT
LHSYPYTQKPGTCRGPNPVFAYAAGPAYLPSCPADIILQKALYYFGPISV
SVKSNCPAFMAYSSGIFTPDQDCLPKEGEVTAEACAQEVDHAMVLVGYGQ
EEGGKTFWVLKNSWGTTWGEGGYMKMLRGAGREEGKCGTSCVGVLAITVV
QGWNLVPMEEWTKEEEEGEDGRWTRFEMCWRLWIKGYWR*
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mRNA from alignment at chr4:1281213..1283820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04710.1 ID=NO04G04710.1|Name=NO04G04710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp|location=Sequence derived from alignment at chr4:1281213..1283820+ (Nannochloropsis oceanica)
AGACAGGCCGCTGTCGAAGAAGCAAGCCCGCAGACATCCCAATTGTCGGG
GAGGGGACGCCCGTGAGAGATAGGGTTAGACACACATGACCAAGGAGGAA
GCGACTGAAATGCATCCTAGACGAAGCTTTCAGCATCAGCGGAAGCCGCA
ACAGCAGCAGCAATACACGTATCGACAACAACATCGCTCGAGCTGGGTGC
TGCTGCTGGCTATGTATGCCGTGGCTTTGCTTGTCCTTATCCCAACTGTC
ACGGCCCATAGGACTATGTCCGAACTGGATGAAGGGAGGCAAAACCAGCC
GGAGCTGTCGGTAGAAGTTGAAGAGACGATGGAAATTTTAGAAGAAGCTA
GGGAAAAGGCCTGGGACGGGGCTCAGGCTTTGATGGGCAACGAAGAGAGC
AGCGGAAATAAGGCTATGCCACCAACGACGGGAGCGGCAAGAGGGGAAGG
CAAGGAAGACGGAGGGGCTCCACATGCAGGGGGGAAAGGTCGTCCTCCTC
CTCGGCCTATGCCTGCTTCTGATAAAGGCAAGGAAGTAGAGGAGCATGCA
AGAAAGTACCATGAGCACCCACCGCAAAACGAGCCGTGGTGGTTGACGTC
GAGCAACCAGACAGCTGGAGCGGAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCCGGCCTGGAAGGGGGAGTGTGACGGGGAATGGGGATATGAAGGG
TACGCTCAAAAAGCAGGTAAGGGCTATGGCCGCGGTGGAGGAGGAAGCAG
CGGCGGGCCTGACGGAGAGAAAGAGGAGCTCCAGAAACGCTGCAGGCAGT
TCAACGAGTCTGTGGCGTACGTTCAGAGCTTCGAGAAGGCAAACCCCAAC
GCCGCGTTTAGGGTGGGCTTGAATAACATGAGTGATTGGACATCGGAGGA
GAAGCAGACGTTGCGGGGTTTGAAGGGGGGGATGGTGGCCGATAAGGAGA
AGATTTTGAATATGGAGGATATTGTAACGATAAAGAAGTTGATCTCTGGG
GATATCACATACGATGAGGTCTTTCCTACAACTACTGGTACGACAGCTGC
TTTTTCAATGGTCGATGAGACGGAAATCATCCTAAACGACGAGGGAAGAG
GGCGTCGCCGGGTGCAGAGCCGTGGCAATGAGTCTCCTCTCCCCTCCTCG
TCCTCCGCTTCCACAGCGCGCTCACTCCCTTCCTCGTCTTCCAGCTCTAC
AGTGCCAGCAGTGATCCTCCCTGCTTCCCTAGATTATCGATATAAAGACG
CTAATCCATATGGGGTCGTGGCAGTTACCCCTGTCAAGCAACAAGGGACG
TGTGGAAGGTAGGTCGCCCTCTCCTCCCCCCCTTCCCTCCCTCCCTCTCT
CAGTCCTCCACTCCCTCGCTTAACCGCACCCTACACCTCTTTCCCCCGTA
CCTTTTCCTCCCGTTTTCCACCTCTTGTTCTCTTTCTTCTCCCTCTCCAC
CAGCTGCTGGGCATTTTCCGCCATGGGCGTGGTCGAGGGCCAAGTCGCAT
TGCAGCAATCCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGTAGTAGTGGTAGCAGCAGTAGCAGCAGTAGCAG
CAGCAAAGGTATATCGACCGTGAGTCTCTCCGCACAACAGATCCTTGATT
GTAGCGAGGCTAATCAGGGATGCGATGGAGGAAGTGTCAGTAATGCTCTG
GCTTACGTGCGCGAAAACGGACTGCGGACGCTTCATTCTTACCCTTACAC
GCAGAAACCAGGTGAGGAATCTGCTTAATTAAGTGTCAGTTGACCCATTC
ATTTACCTATTTATACATCCGTTGCGTCCCTTTGTATATTTATTATTTAT
TTATTTATTTATCTGTCCATGACATACATTTATTCATCCATTCATCTATT
ATATTGTTCGTTCATATCCCTCTGCGCGCACACACCCATGCAGGTACATG
CCGCGGCCCCAACCCTGTCTTCGCCTACGCTGCTGGTCCAGCTTACCTCC
CTTCCTGCCCTGCCGATATTATCTTGCAAAAAGCTTTGTATTACTTCGGT
CCTATATCCGTGAGTGTGAAGAGCAATTGTCCCGCTTTCATGGCCTATAG
CAGTGGCATTTTCACCCCTGATCAAGACTGCTTGCCGAAAGAGGGGGAGG
TGACTGCAGAGGCATGTGCGCAGGAGGTGGACCACGCGATGGTCTTGGTT
GGCTACGGGCAGGAGGAAGGGGGGAAAACGTTTTGGGTGTTGAAAAATTC
GTGGGGCACTACGTGGGGAGAGGGAGGGTATATGAAGATGTTGAGGGGGG
CAGGGAGGGAGGAAGGGAAGTGCGGGACGTCGTGTGTTGGAGTGCTTGCC
ATCACGGTGGTGCAGGGCTGGAACTTGGTCCCGATGGAGGAGTGGACGAA
GGAGGAGGAGGAGGGGGAGGACGGGCGCTGGACAAGGTTCGAAATGTGTT
GGAGACTGTGGATAAAAGGGTATTGGCGTTAGGGTGCCTGTTGGGGAGTA
TCTTATTGCTTGGCTTGTTCTATTTTTGCTGTGCTCGGAGGAGGAGGACA
GCGAGGATGGCAGTATTACAGATGAAGTTGGATAGGGAGAGGGCGCGGTG
GGTGTAGG
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Coding sequence (CDS) from alignment at chr4:1281213..1283820+

>NO04G04710.1 ID=NO04G04710.1|Name=NO04G04710.1|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at chr4:1281213..1283820+ (Nannochloropsis oceanica)
ATGACCAAGGAGGAAGCGACTGAAATGCATCCTAGACGAAGCTTTCAGCA
TCAGCGGAAGCCGCAACAGCAGCAGCAATACACGTATCGACAACAACATC
GCTCGAGCTGGGTGCTGCTGCTGGCTATGTATGCCGTGGCTTTGCTTGTC
CTTATCCCAACTGTCACGGCCCATAGGACTATGTCCGAACTGGATGAAGG
GAGGCAAAACCAGCCGGAGCTGTCGGTAGAAGTTGAAGAGACGATGGAAA
TTTTAGAAGAAGCTAGGGAAAAGGCCTGGGACGGGGCTCAGGCTTTGATG
GGCAACGAAGAGAGCAGCGGAAATAAGGCTATGCCACCAACGACGGGAGC
GGCAAGAGGGGAAGGCAAGGAAGACGGAGGGGCTCCACATGCAGGGGGGA
AAGGTCGTCCTCCTCCTCGGCCTATGCCTGCTTCTGATAAAGGCAAGGAA
GTAGAGGAGCATGCAAGAAAGTACCATGAGCACCCACCGCAAAACGAGCC
GTGGTGGTTGACGTCGAGCAACCAGACAGCTGGAGCGGAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCCGGCCTGGAAGGGGGAGTGTGACGGGGAA
TGGGGATATGAAGGGTACGCTCAAAAAGCAGGTAAGGGCTATGGCCGCGG
TGGAGGAGGAAGCAGCGGCGGGCCTGACGGAGAGAAAGAGGAGCTCCAGA
AACGCTGCAGGCAGTTCAACGAGTCTGTGGCGTACGTTCAGAGCTTCGAG
AAGGCAAACCCCAACGCCGCGTTTAGGGTGGGCTTGAATAACATGAGTGA
TTGGACATCGGAGGAGAAGCAGACGTTGCGGGGTTTGAAGGGGGGGATGG
TGGCCGATAAGGAGAAGATTTTGAATATGGAGGATATTGTAACGATAAAG
AAGTTGATCTCTGGGGATATCACATACGATGAGGTCTTTCCTACAACTAC
TGGTACGACAGCTGCTTTTTCAATGGTCGATGAGACGGAAATCATCCTAA
ACGACGAGGGAAGAGGGCGTCGCCGGGTGCAGAGCCGTGGCAATGAGTCT
CCTCTCCCCTCCTCGTCCTCCGCTTCCACAGCGCGCTCACTCCCTTCCTC
GTCTTCCAGCTCTACAGTGCCAGCAGTGATCCTCCCTGCTTCCCTAGATT
ATCGATATAAAGACGCTAATCCATATGGGGTCGTGGCAGTTACCCCTGTC
AAGCAACAAGGGACGTGTGGAAGCTGCTGGGCATTTTCCGCCATGGGCGT
GGTCGAGGGCCAAGTCGCATTGCAGCAATCCAACAGCAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTGGTAGC
AGCAGTAGCAGCAGTAGCAGCAGCAAAGGTATATCGACCGTGAGTCTCTC
CGCACAACAGATCCTTGATTGTAGCGAGGCTAATCAGGGATGCGATGGAG
GAAGTGTCAGTAATGCTCTGGCTTACGTGCGCGAAAACGGACTGCGGACG
CTTCATTCTTACCCTTACACGCAGAAACCAGGTACATGCCGCGGCCCCAA
CCCTGTCTTCGCCTACGCTGCTGGTCCAGCTTACCTCCCTTCCTGCCCTG
CCGATATTATCTTGCAAAAAGCTTTGTATTACTTCGGTCCTATATCCGTG
AGTGTGAAGAGCAATTGTCCCGCTTTCATGGCCTATAGCAGTGGCATTTT
CACCCCTGATCAAGACTGCTTGCCGAAAGAGGGGGAGGTGACTGCAGAGG
CATGTGCGCAGGAGGTGGACCACGCGATGGTCTTGGTTGGCTACGGGCAG
GAGGAAGGGGGGAAAACGTTTTGGGTGTTGAAAAATTCGTGGGGCACTAC
GTGGGGAGAGGGAGGGTATATGAAGATGTTGAGGGGGGCAGGGAGGGAGG
AAGGGAAGTGCGGGACGTCGTGTGTTGGAGTGCTTGCCATCACGGTGGTG
CAGGGCTGGAACTTGGTCCCGATGGAGGAGTGGACGAAGGAGGAGGAGGA
GGGGGAGGACGGGCGCTGGACAAGGTTCGAAATGTGTTGGAGACTGTGGA
TAAAAGGGTATTGGCGTTAG
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Synonyms
Publications