NO04G04630.1, NO04G04630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04630.1
Unique NameNO04G04630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2901
Alignment locationchr4:1259325..1262757 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1259325..1262757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04630.1 vs.
Match: EWM28849.1 (tetratricopeptide repeat-containing protein [Nannochloropsis gaditana]; EWM28850.1 tetratricopeptide repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 343.2 bits (879), Expect = 8.600e-91
Identity = 194/319 (60.82%), Postives = 225/319 (70.53%), Query Frame = 0 
Query:    1 MCSSTGFQRHLAEEERVDYARSLLCEGASLLVQGQAAHSAI-TTRHLHQCLDKFDRALRLAPHLRAHAWERGFVLFYLNRFKEAADQFAWCTSLDPDDCEPFLWRCLCLAKLQGWSAGVAVLDRFTGCDNRLCMMEVLAFYKGHTDLESVLDHASDDCHSAARASFACALYFEARGRGREAETMALPLLSAVASVDCGGDTYLRSLARIHMHHVRQGLMH-DAPLQQNKRMNHRKVNGVLQLSSTPSSLSSSSSSSTSSSSLESLASLASLPSITVGKEGGMGERGLGVISVYTTVSPPVCRSPSKPALFRTALVKNSC 318
            MCSS  F  H+ ++ERVD AR LLCEGASLLVQ Q +   I ++RHL QCLDKFD ALRLAPHLRAHAWERGFVL YLNR KEAADQFA+CTSLDPDDCEPFLWR LC+AKLQGW+ G+AVLD+F G DNRLCMMEVLA YKG T+LESV D A  D HSAARASFACAL+FEA G  R AE M+LPLL AVA+V CGGDTYL+SLARIHM HV+  L    A  Q  +R              TP  LS    SS+++S++ S A+LAS  +++       G +       Y T S P+C   +K A+ R ALVKNSC
Sbjct:    1 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGT-RAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRR--------------TP--LSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRK-------YDTPSVPLCSRAAKAAVLRRALVKNSC 295
The following BLAST results are available for this feature:
BLAST of NO04G04630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28849.18.600e-9160.82tetratricopeptide repeat-containing protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04630NO04G04630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04630.1NO04G04630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04630.1.cds1NO04G04630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04630.1.cds2NO04G04630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04630.1.cds3NO04G04630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04630.1 ID=NO04G04630.1|Name=NO04G04630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2901bp
GGGGTTTCCTCGAGTAGGACACGAGAAGCCCTGTGCCTGTGGTGCGAGAG
TGCTTGGAATGAAAATGGCAGCCTTAGCAACAAAAATCACAAGCACTGCA
CGCATAGATCTTTTCTTATGTGTCAAATGGCTTGCCATAGTATCACCATA
AATGCCAGGGAACCGAGAATACACGGCTTTCCAACAAAGAGCTCCCCGCC
CGGAAAACGATAGTGTGCTTATTCCCCCTATCTTAGTGGGGAGACAGGAG
TGGAGTAGGCCTTAGCCTTTGAACAAGCGTACGTCGCGGCGCTACGATCG
CATTGCTTTTTATCGTGTGTTTGTTGTCGAGTCTTTGTTTCGAACGGCCC
TTGGTTTGACACTATGCGATCCGCTTCTCCGCCACCACTAACGCACTTCG
TCTCAATCTTCAAGCACACAATCAAGTCTCATTGGCTCCCGTGGATCGTT
CTGTTGTGCCCTCTCTCGCTCCCCCCCTTGCTTATACACTAATACCGCCG
CTCACTTCTCTACACACAGCAGCAGCTACGACGACAATAACAACTCCGCA
CCACTACCAGAACCACCAGCAGCATGTGTAGTAGCACTGGCTTCCAGCGT
CATCTGGCGGAAGAGGAAAGGGTCGACTATGCCCGCAGCTTGCTATGCGA
AGGGGCCTCCCTCCTCGTTCAAGGCCAAGCGGCCCACAGTGCTATTACAA
CACGGCATCTCCACCAATGCTTGGACAAATTCGACCGCGCCTTGCGCCTT
GCTCCACACTTGCGAGCTCACGCGTGGGAACGCGGCTTCGTCCTCTTCTA
CCTCAACCGATTCAAGGAGGCCGCGGACCAGTTCGCCTGGTGCACATCTC
TAGACCCGGACGACTGCGAGCCTTTCCTCTGGCGATGCCTGTGCCTTGCC
AAGCTTCAAGGTTGGTCTGCAGGGGTGGCTGTATTGGACCGTTTCACGGG
TTGCGACAACCGGCTGTGTATGATGGAGGTGCTGGCGTTCTACAAAGGAC
ACACGGACTTAGAATCAGTTCTTGACCATGCCAGTGATGATTGCCATTCG
GCCGCCCGCGCCTCCTTTGCGTGTGCCCTGTATTTCGAGGCTAGGGGGAG
GGGGAGGGAAGCAGAGACGATGGCCTTACCGCTCTTGTCAGCGGTGGCGA
GCGTTGATTGCGGGGGGGATACGTACCTGAGGTCGCTGGCCCGGATACAC
ATGCACCATGTCAGGCAAGGCTTAATGCATGACGCTCCTTTGCAGCAGAA
CAAGCGGATGAACCACCGGAAGGTCAATGGAGTGCTTCAGTTGAGTAGCA
CTCCCTCCTCACTCTCATCCTCGTCCTCGTCCTCCACGTCGTCCTCGTCT
TTGGAATCGTTGGCGTCACTGGCGTCATTGCCGTCGATAACGGTGGGGAA
GGAGGGAGGGATGGGGGAAAGAGGCTTGGGGGTGATAAGTGTGTATACGA
CTGTATCACCACCTGTGTGTAGATCTCCCTCCAAGCCCGCCTTGTTTCGG
ACTGCGCTAGTGAAGAACAGCTGCTGAATGGGGCGCTAGCGGGTTGGAGT
AGTAGATGTTTTAGGGGGTGGGTGATTTTGTATTGGGGATTGGGGAACGT
AGGCTACATCCTCCGACGCCTACCTTGTTCCAGATGTGATATTTTGCGAA
CTGCTGGAGAGGGAGAGAGGGAGGTAGGGAGGTTTGTGTTGGCGGGGGAG
TGCAAATATATCGTGATGTACATCGTTATACATAGAGAGAGAAGGATGGA
GAATAAGAGAGAACTGTGATGGCGTGGAGTATGCCTATGCCTTCCTATCT
CTTTTTGTGTCCTCGGGCGTCAGGGGCCCATATTTTGTGTGCGTGTGCAC
TTGCTTGTATGTATGAGGGGTGAGGAAGAGTGAGAGGGTCGTGGGACGCG
CGCTGGTGGCGGCGGGGGTAAAAGGAAATGTAGAGAGAGGTAGCGAGAGA
TAGAGAGAAAGAAGGTGTGTGATTGCGATTTTACGTATGGTTTCCTTTGA
AGATGAAGCAGTGATCCCATTGATAGGGGAGATATAAATGACGATGGGGG
CTGCGAAGAGGGACAAAGAGAAGATAGGAAGATAGGAAGGGAGAAGATTC
CGCGTGGAAAGAGAACAATATTGAAATTTTGTTGTCATTTACGATGAGCG
GTGTCGTGTATGTGCATGTGTAAGAGGGAGAGAAGGAGGAGGAGGACGGA
CGACAGTCAAACAGTGGCACGGAAGTAGTGTAAAAAAGAACACCGGAAGA
GCCCATGATGGGGAGGGAGGGAGGATGAGAGGGAGGGCGATAGGGCGATA
GGGCGAGTTCCGATGTAAAGAGAGGTAATGCCTTCTCTTCGCACGTCTCG
TGTCCTTTTTATTCGACCGAACCCATTACCGCACCAACCAATCGACAGAT
GAGTGACGAGGCGTGTTTTTTACTCTTTTCCCAACCAGAAGGATCCATTT
AAAAGACACAATCAACACACAAACACACAAGCGGGCATACATATGTCCAT
GCGTATCTATGTGTCGATCTACAAATCTGCGTGGATGGGCGAGTGTCGTG
TGGACGTCTGTAGGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGAATATATACCGTAGACTATTATCATCGTTGTCAAGA
TATAGGCAAGAAATCAGATATAAAAAAAGAAGCATCACAAGAAAGGCGCC
ATTTGTGCCGTCTCTGTCTCTCTCTCTGATCATGGAAGAAATAGCAACAG
AAGATGACCACGACGACGAAGAAGAAAATTAGAAGAAAGAAGATGAAGGA
CAAGAGGGCGAAGATTTAGAATGCACAATATTGAGGTAATACCATGCCGT
GTCGAAAATGGACCAAAAAAAGGCTTCAAGTGCAAATATCGAGCACGAAA
G
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protein sequence of NO04G04630.1

>NO04G04630.1-protein ID=NO04G04630.1-protein|Name=NO04G04630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MCSSTGFQRHLAEEERVDYARSLLCEGASLLVQGQAAHSAITTRHLHQCL
DKFDRALRLAPHLRAHAWERGFVLFYLNRFKEAADQFAWCTSLDPDDCEP
FLWRCLCLAKLQGWSAGVAVLDRFTGCDNRLCMMEVLAFYKGHTDLESVL
DHASDDCHSAARASFACALYFEARGRGREAETMALPLLSAVASVDCGGDT
YLRSLARIHMHHVRQGLMHDAPLQQNKRMNHRKVNGVLQLSSTPSSLSSS
SSSSTSSSSLESLASLASLPSITVGKEGGMGERGLGVISVYTTVSPPVCR
SPSKPALFRTALVKNSC*
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mRNA from alignment at chr4:1259325..1262757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04630.1 ID=NO04G04630.1|Name=NO04G04630.1|organism=Nannochloropsis oceanica|type=mRNA|length=3433bp|location=Sequence derived from alignment at chr4:1259325..1262757- (Nannochloropsis oceanica)
GGGGTTTCCTCGAGTAGGACACGAGAAGCCCTGTGCCTGTGGTGCGAGAG
TGCTTGGAATGAAAATGGCAGCCTTAGCAACAAAAATCACAAGCACTGCA
CGCATAGATCTTTTCTTATGTGTCAAATGGCTTGCCATAGTATCACCATA
AATGCCAGGGAACCGAGAATACACGGCTTTCCAACAAAGAGCTCCCCGCC
CGGAAAACGATAGTGTGCTTATTCCCCCTATCTTAGTGGGGAGACAGGAG
TGGAGTAGGCCTTAGCCTTTGAACAAGCGTACGTCGCGGCGCTACGATCG
CATTGCTTTTTATCGTGTGTTTGTTGTCGAGTCTTTGTTTCGAACGGCCC
TTGGTTTGACACTATGCGATCCGCTTCTCCGCCACCACTAACGCACTTCG
TCTCAATCTTCAAGCACACAATCAAGTCTCATTGGCTCCCGTGGATCGTT
CTGTTGTGCCCTCTCTCGCTCCCCCCCTTGCTTATACACTAATACCGCCG
CTCACTTCTCTACACACAGCAGCAGCTACGACGACAATAACAACTCCGCA
CCACTACCAGAACCACCAGCAGCATGTGTAGTAGCACTGGCTTCCAGCGT
CATCTGGCGGAAGAGGAAAGGGTCGACTATGCCCGCAGCTTGCTATGCGA
AGGGGCCTCCCTCCTCGTTCAAGGCCAAGCGGCCCACAGTGCTATTACAA
CACGGCATCTCCACCAATGCTTGGACAAATTCGACCGCGCCTTGCGCCTT
GCTCCACACTTGCGAGCTCACGCGGTAAGGATACTACTCAGGGGGCGGGA
TATGGGCCTATCCCCGATTGACATGCTCACTATCCCCGCTTGGCGTTCGC
CTGTCCCTGGTGAGATGTATCTGTTGAGTGGTATCACAGGATATGAGTCA
GCCACTTAGGCAAGCGCCCACGACACACTTCCCGCGCTCTGTCTCTCCTT
TGTATACGTGTGCCTTGCTCTCGTCCAACTCCAAGTCCGACATGCTGCCA
CAGCACCACTCATCCTCCCTCCGTCCTTCCCTCCGTCCTTTCCTCCCTTT
CCATACAGTGGGAACGCGGCTTCGTCCTCTTCTACCTCAACCGATTCAAG
GAGGCCGCGGACCAGTTCGCCTGGTGCACATCTCTAGACCCGGACGACTG
CGAGCCTTTCCTCTGGCGATGCCTGGTGGGTCGCGTTCTCCCTCCCTCCC
TCTCCTATTCCTCCCTCCCTCTCCTCCCTTTCCTTCCTTCCCTTTTATTC
CCTCGCCTTTCTTCCTCTGTACTCCCTCCTCTTCCTCCTTCCCTCCTCCA
AGTGACTCGCGAGGCTCCAAAGCAAGTGCTCGACAAAACTCACTTGCTAC
ATCAAACCACCACAAACAAATAGCAACTCATCCCGCCCGCCCTCCCTCCC
TTACTCCTCCTCCCCTCCCGCAGTGCCTTGCCAAGCTTCAAGGTTGGTCT
GCAGGGGTGGCTGTATTGGACCGTTTCACGGGTTGCGACAACCGGCTGTG
TATGATGGAGGTGCTGGCGTTCTACAAAGGACACACGGACTTAGAATCAG
TTCTTGACCATGCCAGTGATGATTGCCATTCGGCCGCCCGCGCCTCCTTT
GCGTGTGCCCTGTATTTCGAGGCTAGGGGGAGGGGGAGGGAAGCAGAGAC
GATGGCCTTACCGCTCTTGTCAGCGGTGGCGAGCGTTGATTGCGGGGGGG
ATACGTACCTGAGGTCGCTGGCCCGGATACACATGCACCATGTCAGGCAA
GGCTTAATGCATGACGCTCCTTTGCAGCAGAACAAGCGGATGAACCACCG
GAAGGTCAATGGAGTGCTTCAGTTGAGTAGCACTCCCTCCTCACTCTCAT
CCTCGTCCTCGTCCTCCACGTCGTCCTCGTCTTTGGAATCGTTGGCGTCA
CTGGCGTCATTGCCGTCGATAACGGTGGGGAAGGAGGGAGGGATGGGGGA
AAGAGGCTTGGGGGTGATAAGTGTGTATACGACTGTATCACCACCTGTGT
GTAGATCTCCCTCCAAGCCCGCCTTGTTTCGGACTGCGCTAGTGAAGAAC
AGCTGCTGAATGGGGCGCTAGCGGGTTGGAGTAGTAGATGTTTTAGGGGG
TGGGTGATTTTGTATTGGGGATTGGGGAACGTAGGCTACATCCTCCGACG
CCTACCTTGTTCCAGATGTGATATTTTGCGAACTGCTGGAGAGGGAGAGA
GGGAGGTAGGGAGGTTTGTGTTGGCGGGGGAGTGCAAATATATCGTGATG
TACATCGTTATACATAGAGAGAGAAGGATGGAGAATAAGAGAGAACTGTG
ATGGCGTGGAGTATGCCTATGCCTTCCTATCTCTTTTTGTGTCCTCGGGC
GTCAGGGGCCCATATTTTGTGTGCGTGTGCACTTGCTTGTATGTATGAGG
GGTGAGGAAGAGTGAGAGGGTCGTGGGACGCGCGCTGGTGGCGGCGGGGG
TAAAAGGAAATGTAGAGAGAGGTAGCGAGAGATAGAGAGAAAGAAGGTGT
GTGATTGCGATTTTACGTATGGTTTCCTTTGAAGATGAAGCAGTGATCCC
ATTGATAGGGGAGATATAAATGACGATGGGGGCTGCGAAGAGGGACAAAG
AGAAGATAGGAAGATAGGAAGGGAGAAGATTCCGCGTGGAAAGAGAACAA
TATTGAAATTTTGTTGTCATTTACGATGAGCGGTGTCGTGTATGTGCATG
TGTAAGAGGGAGAGAAGGAGGAGGAGGACGGACGACAGTCAAACAGTGGC
ACGGAAGTAGTGTAAAAAAGAACACCGGAAGAGCCCATGATGGGGAGGGA
GGGAGGATGAGAGGGAGGGCGATAGGGCGATAGGGCGAGTTCCGATGTAA
AGAGAGGTAATGCCTTCTCTTCGCACGTCTCGTGTCCTTTTTATTCGACC
GAACCCATTACCGCACCAACCAATCGACAGATGAGTGACGAGGCGTGTTT
TTTACTCTTTTCCCAACCAGAAGGATCCATTTAAAAGACACAATCAACAC
ACAAACACACAAGCGGGCATACATATGTCCATGCGTATCTATGTGTCGAT
CTACAAATCTGCGTGGATGGGCGAGTGTCGTGTGGACGTCTGTAGGTATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATA
TATACCGTAGACTATTATCATCGTTGTCAAGATATAGGCAAGAAATCAGA
TATAAAAAAAGAAGCATCACAAGAAAGGCGCCATTTGTGCCGTCTCTGTC
TCTCTCTCTGATCATGGAAGAAATAGCAACAGAAGATGACCACGACGACG
AAGAAGAAAATTAGAAGAAAGAAGATGAAGGACAAGAGGGCGAAGATTTA
GAATGCACAATATTGAGGTAATACCATGCCGTGTCGAAAATGGACCAAAA
AAAGGCTTCAAGTGCAAATATCGAGCACGAAAG
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Coding sequence (CDS) from alignment at chr4:1259325..1262757-

>NO04G04630.1 ID=NO04G04630.1|Name=NO04G04630.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr4:1259325..1262757- (Nannochloropsis oceanica)
ATGTGTAGTAGCACTGGCTTCCAGCGTCATCTGGCGGAAGAGGAAAGGGT
CGACTATGCCCGCAGCTTGCTATGCGAAGGGGCCTCCCTCCTCGTTCAAG
GCCAAGCGGCCCACAGTGCTATTACAACACGGCATCTCCACCAATGCTTG
GACAAATTCGACCGCGCCTTGCGCCTTGCTCCACACTTGCGAGCTCACGC
GTGGGAACGCGGCTTCGTCCTCTTCTACCTCAACCGATTCAAGGAGGCCG
CGGACCAGTTCGCCTGGTGCACATCTCTAGACCCGGACGACTGCGAGCCT
TTCCTCTGGCGATGCCTGTGCCTTGCCAAGCTTCAAGGTTGGTCTGCAGG
GGTGGCTGTATTGGACCGTTTCACGGGTTGCGACAACCGGCTGTGTATGA
TGGAGGTGCTGGCGTTCTACAAAGGACACACGGACTTAGAATCAGTTCTT
GACCATGCCAGTGATGATTGCCATTCGGCCGCCCGCGCCTCCTTTGCGTG
TGCCCTGTATTTCGAGGCTAGGGGGAGGGGGAGGGAAGCAGAGACGATGG
CCTTACCGCTCTTGTCAGCGGTGGCGAGCGTTGATTGCGGGGGGGATACG
TACCTGAGGTCGCTGGCCCGGATACACATGCACCATGTCAGGCAAGGCTT
AATGCATGACGCTCCTTTGCAGCAGAACAAGCGGATGAACCACCGGAAGG
TCAATGGAGTGCTTCAGTTGAGTAGCACTCCCTCCTCACTCTCATCCTCG
TCCTCGTCCTCCACGTCGTCCTCGTCTTTGGAATCGTTGGCGTCACTGGC
GTCATTGCCGTCGATAACGGTGGGGAAGGAGGGAGGGATGGGGGAAAGAG
GCTTGGGGGTGATAAGTGTGTATACGACTGTATCACCACCTGTGTGTAGA
TCTCCCTCCAAGCCCGCCTTGTTTCGGACTGCGCTAGTGAAGAACAGCTG
CTGA
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Synonyms
Publications