NO04G04600.1, NO04G04600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04600.1
Unique NameNO04G04600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1759
Alignment locationchr4:1251572..1253924 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1251572..1253924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04600.1 vs.
Match: EWM28844.1 (ornithine mitochondrial-like protein [Nannochloropsis gaditana]; EWM28845.1 ornithine mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 551.2 bits (1419), Expect = 2.900e-153
Identity = 283/363 (77.96%), Postives = 305/363 (84.02%), Query Frame = 0 
Query:   74 MWARKLTRPFTAAGAVRLQE--AGAGSGLSGLGGATRAFQGVASLKGKHLMNIDELTDSELRGLLSLSAQLKATYKSSSPSSLPRPLTGTSVSMIFQKRSTRTRVSTETGMAMLGGHALFLGPQDIQLGVNESLRDTAAVLSRFNSLILARVFAHPDVQMLAKHSSVPVINALSDLYHPLQALADLLTLEEHFGEGGMEGKVLAWVGDGNNVLHDLAMGAVRLGMHVRVACPEGYEPDAEVMKKVQGHAQRKGGSLMMTRDPMAAVEGANVVVTDTWVSMGQEEEYEKRMRDFEGFQVNKAMMEKGA-GKEGGKAGCVFLHCLPRHPEEVTDEVFYDEERSLVFPEAENRMWTVMAVMLSLVG 434
            MWA KL+RPF       L+      G GL    G  R+FQGVASL+GK+ MNIDELTD ELR LLSLSAQLK  Y S SP  LPRP  G SVSMIFQKRSTRTRVSTETGMA+LGGHALFLGPQD+QLGVNES+RDTA VLSRFNSLILARVFAH DVQ+LAKHSSVPVINALSDLYHPLQALADLLTLEEHFG+G ++GKVL WVGDGNNVLHDLAMGA RLGMHVRVACP GYEP+ E+M +V+ HAQR GGS +M RDPM AV GA+V+VTDTWVSMGQEEEYE+RMRDFEGFQV + MME GA G   G+  CVFLHCLPRHPEEVTDEVFYD  RSLVFPEAENRMWTVMAVMLSLVG
Sbjct:    1 MWALKLSRPFMECHTRHLKPNLLANGYGLWAREGGMRSFQGVASLQGKNFMNIDELTDVELRDLLSLSAQLKKAYSSPSPPVLPRPCEGKSVSMIFQKRSTRTRVSTETGMALLGGHALFLGPQDVQLGVNESMRDTANVLSRFNSLILARVFAHTDVQLLAKHSSVPVINALSDLYHPLQALADLLTLEEHFGKGSLQGKVLTWVGDGNNVLHDLAMGAARLGMHVRVACPVGYEPNGEIMHRVEWHAQRSGGSYVMERDPMTAVAGAHVIVTDTWVSMGQEEEYERRMRDFEGFQVTRRMMEHGAKGSNAGRPACVFLHCLPRHPEEVTDEVFYDPARSLVFPEAENRMWTVMAVMLSLVG 363
The following BLAST results are available for this feature:
BLAST of NO04G04600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28844.12.900e-15377.96ornithine mitochondrial-like protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04600NO04G04600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04600.1NO04G04600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04600.1.cds1NO04G04600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04600.1.cds2NO04G04600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04600.1 ID=NO04G04600.1|Name=NO04G04600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1759bp
TCTCTTGGGACTGATAAATTGGTACACTTTGTTGTGTGCGGCCGCGATTA
AAGTAAGGACAACAAAGGAGACGCATCGACCAGCACCCTTCTCCTGCAAA
CTCCTTGTTTTGCTCCTAGTGATGGCGGTGAAGGCGACGACAAATTTGCG
TGAGTTGTTGTTTTGTATCTGCTCACCTCGTGTCCCCATCGATTCACTCT
CGTCCGCTTGATCTCGGCTACGGCATGGGCGGCGGCGATCATGCCGCGCG
CTATACTTCGAGACGAAGCCACACTTCGACCGGGCACTCAAGCGCGCCTG
AACGGGCACTTATCTTTTTTGTAATTGTGCATATTCACATCGGCATGCTC
ATTCCGGCACTTATCTTGGTCTCCCTTGTCTTTGTCCTTCAACAAACCAC
AGCCTCCTCCCCAACCCCGTGCCACAAGCCAACAAGACCAAATATGTGGG
CACGCAAGCTCACCCGTCCCTTCACGGCTGCAGGAGCCGTACGATTACAA
GAAGCAGGAGCAGGAAGTGGACTATCGGGTCTTGGAGGGGCCACCCGCGC
CTTCCAAGGCGTCGCCAGCTTGAAAGGAAAGCACTTGATGAACATCGACG
AGCTCACGGACAGCGAGCTCCGGGGCCTACTCTCCCTCTCCGCCCAACTC
AAAGCCACGTACAAGTCCTCCTCCCCTTCCTCCCTCCCTCGCCCCCTGAC
GGGAACATCCGTGAGCATGATCTTCCAAAAACGGAGCACGCGTACCCGTG
TCTCCACAGAGACGGGCATGGCTATGCTAGGCGGACATGCCCTTTTTCTT
GGTCCACAAGACATTCAATTAGGGGTGAACGAGTCCTTGCGTGATACGGC
GGCTGTCCTCTCTCGCTTCAACTCCCTCATCCTGGCCCGAGTGTTTGCGC
ATCCCGACGTGCAAATGCTGGCAAAGCACTCCTCGGTGCCTGTGATCAAT
GCTCTGTCCGACTTGTACCACCCACTGCAAGCCCTGGCCGATTTGCTGAC
CCTGGAGGAGCACTTCGGGGAGGGCGGGATGGAGGGCAAGGTCCTGGCGT
GGGTCGGTGACGGGAATAACGTCCTCCACGACCTGGCCATGGGCGCAGTG
CGGCTGGGAATGCATGTGCGGGTGGCCTGCCCGGAAGGGTACGAGCCAGA
CGCGGAGGTAATGAAGAAGGTGCAAGGCCACGCGCAGAGGAAGGGAGGGT
CGTTGATGATGACACGAGACCCAATGGCGGCCGTGGAGGGGGCGAATGTG
GTGGTGACCGATACCTGGGTGAGTATGGGCCAGGAAGAGGAGTACGAGAA
GCGGATGCGGGACTTTGAGGGTTTTCAGGTCAACAAAGCCATGATGGAGA
AGGGGGCAGGGAAGGAGGGAGGGAAAGCAGGGTGCGTGTTTTTGCATTGT
CTCCCTCGGCATCCGGAGGAGGTGACGGACGAGGTGTTTTATGATGAGGA
AAGAAGTCTGGTCTTCCCCGAGGCGGAGAATCGGATGTGGACGGTCATGG
CCGTCATGCTTTCGTTGGTGGGGAAGTAGGAAAAAGGATTTAGGGAGGAA
GGCAGGGAGGGGGGACGGGAGGGGAGGAATACGGTGCGGACGGTTATATG
TTTCGTGGATGGGAAATAAGAAAGGGAGGGGAAAAGGGAGGAGGTAGAGA
TGAGGAAGAGGACACGAAGAATAAAATTAAATGAAGGAGCCACCCAGTCT
TGAGTCTGTCTACCTTACTGTCGACCGTCAACCATCATCGAATGACAGAC
GAAACGGCG
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protein sequence of NO04G04600.1

>NO04G04600.1-protein ID=NO04G04600.1-protein|Name=NO04G04600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MGGGDHAARYTSRRSHTSTGHSSAPERALIFFVIVHIHIGMLIPALILVS
LVFVLQQTTASSPTPCHKPTRPNMWARKLTRPFTAAGAVRLQEAGAGSGL
SGLGGATRAFQGVASLKGKHLMNIDELTDSELRGLLSLSAQLKATYKSSS
PSSLPRPLTGTSVSMIFQKRSTRTRVSTETGMAMLGGHALFLGPQDIQLG
VNESLRDTAAVLSRFNSLILARVFAHPDVQMLAKHSSVPVINALSDLYHP
LQALADLLTLEEHFGEGGMEGKVLAWVGDGNNVLHDLAMGAVRLGMHVRV
ACPEGYEPDAEVMKKVQGHAQRKGGSLMMTRDPMAAVEGANVVVTDTWVS
MGQEEEYEKRMRDFEGFQVNKAMMEKGAGKEGGKAGCVFLHCLPRHPEEV
TDEVFYDEERSLVFPEAENRMWTVMAVMLSLVGK*
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mRNA from alignment at chr4:1251572..1253924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04600.1 ID=NO04G04600.1|Name=NO04G04600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp|location=Sequence derived from alignment at chr4:1251572..1253924+ (Nannochloropsis oceanica)
TCTCTTGGGACTGATAAATTGGTACACTTTGTTGTGTGCGGCCGCGATTA
AAGTAAGGACAACAAAGGAGACGCATCGACCAGCACCCTTCTCCTGCAAA
CTCCTTGTTTTGCTCCTAGTGATGGCGGTGAAGGCGACGACAAATTTGCG
TGAGTTGTTGTTTTGTATCTGCTCACCTCGTGTCCCCATCGATTCACTCT
CGTCCGCTTGATCTCGGCTACGGCATGGGCGGCGGCGATCATGCCGCGCG
CTATACTTCGAGACGAAGCCACACTTCGACCGGGCACTCAAGCGCGCCTG
AACGGGCACTTATCTTTTTTGTAATTGTGCATATTCACATCGGCATGCTC
ATTCCGGCACTTATCTTGGTCTCCCTTGTCTTTGTCCTTCAACAAACCAC
AGCCTCCTCCCCAACCCCGTGCCACAAGCCAACAAGACCAAATATGTGGG
CACGCAAGCTCACCCGTCCCTTCACGGCTGCAGGAGCCGTACGATTACAA
GAAGCAGGAGCAGGAAGTGGACTATCGGGTCTTGGAGGGGGTATGTACTA
GATTTACGTTGCCTCTCCGTGTGCTGATCTTCCTCTCCCTCAACCCCACT
CGATCCCTGTAACCCACACCCACCACTCCACGCACGCGTTACAGTAGCAT
CTTTTTAAGCACTACTTAGTGTTACTTGATATGATTCCCTTCTTGCCACG
ATTACATATACAATTGCTCGCTGTACATGGATAATTTGTTTTCAATCTTT
TCCTCTACCCTCCCTCACTCTCATGTGTCTGGACCATGAAAGAGCGCTGT
CGCACTCGCAAGGGCACACACGTATCATCTGCGTAACATTCATGACATGA
CGTCCCTCAAACCTAAGACGTTTCCAGGCATGTCCACAAAAAATAAATGA
CGATTCTCGCGGTAGATTTGGTTGGGCGGCTTCCATGCACGCCCTTGGCC
TGATGTCAATATGGCGTGGCCCTCGTGGCTGTCCTCCAGCAAATGTGAAT
ATGATATCCTCTTCTGCCGTACACAGTCTGCAATGCCATCCTCTTGAATG
CAGGCCTTCGACTGAGCCCCTCTCGGGCCCCCTTTGACGCTCACTCTTTC
CTTCTGTCCCTCCCTCCTTCCCCCCTCCTTTCAGCCACCCGCGCCTTCCA
AGGCGTCGCCAGCTTGAAAGGAAAGCACTTGATGAACATCGACGAGCTCA
CGGACAGCGAGCTCCGGGGCCTACTCTCCCTCTCCGCCCAACTCAAAGCC
ACGTACAAGTCCTCCTCCCCTTCCTCCCTCCCTCGCCCCCTGACGGGAAC
ATCCGTGAGCATGATCTTCCAAAAACGGAGCACGCGTACCCGTGTCTCCA
CAGAGACGGGCATGGCTATGCTAGGCGGACATGCCCTTTTTCTTGGTCCA
CAAGACATTCAATTAGGGGTGAACGAGTCCTTGCGTGATACGGCGGCTGT
CCTCTCTCGCTTCAACTCCCTCATCCTGGCCCGAGTGTTTGCGCATCCCG
ACGTGCAAATGCTGGCAAAGCACTCCTCGGTGCCTGTGATCAATGCTCTG
TCCGACTTGTACCACCCACTGCAAGCCCTGGCCGATTTGCTGACCCTGGA
GGAGCACTTCGGGGAGGGCGGGATGGAGGGCAAGGTCCTGGCGTGGGTCG
GTGACGGGAATAACGTCCTCCACGACCTGGCCATGGGCGCAGTGCGGCTG
GGAATGCATGTGCGGGTGGCCTGCCCGGAAGGGTACGAGCCAGACGCGGA
GGTAATGAAGAAGGTGCAAGGCCACGCGCAGAGGAAGGGAGGGTCGTTGA
TGATGACACGAGACCCAATGGCGGCCGTGGAGGGGGCGAATGTGGTGGTG
ACCGATACCTGGGTGAGTATGGGCCAGGAAGAGGAGTACGAGAAGCGGAT
GCGGGACTTTGAGGGTTTTCAGGTCAACAAAGCCATGATGGAGAAGGGGG
CAGGGAAGGAGGGAGGGAAAGCAGGGTGCGTGTTTTTGCATTGTCTCCCT
CGGCATCCGGAGGAGGTGACGGACGAGGTGTTTTATGATGAGGAAAGAAG
TCTGGTCTTCCCCGAGGCGGAGAATCGGATGTGGACGGTCATGGCCGTCA
TGCTTTCGTTGGTGGGGAAGTAGGAAAAAGGATTTAGGGAGGAAGGCAGG
GAGGGGGGACGGGAGGGGAGGAATACGGTGCGGACGGTTATATGTTTCGT
GGATGGGAAATAAGAAAGGGAGGGGAAAAGGGAGGAGGTAGAGATGAGGA
AGAGGACACGAAGAATAAAATTAAATGAAGGAGCCACCCAGTCTTGAGTC
TGTCTACCTTACTGTCGACCGTCAACCATCATCGAATGACAGACGAAACG
GCG
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Coding sequence (CDS) from alignment at chr4:1251572..1253924+

>NO04G04600.1 ID=NO04G04600.1|Name=NO04G04600.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr4:1251572..1253924+ (Nannochloropsis oceanica)
ATGGGCGGCGGCGATCATGCCGCGCGCTATACTTCGAGACGAAGCCACAC
TTCGACCGGGCACTCAAGCGCGCCTGAACGGGCACTTATCTTTTTTGTAA
TTGTGCATATTCACATCGGCATGCTCATTCCGGCACTTATCTTGGTCTCC
CTTGTCTTTGTCCTTCAACAAACCACAGCCTCCTCCCCAACCCCGTGCCA
CAAGCCAACAAGACCAAATATGTGGGCACGCAAGCTCACCCGTCCCTTCA
CGGCTGCAGGAGCCGTACGATTACAAGAAGCAGGAGCAGGAAGTGGACTA
TCGGGTCTTGGAGGGGCCACCCGCGCCTTCCAAGGCGTCGCCAGCTTGAA
AGGAAAGCACTTGATGAACATCGACGAGCTCACGGACAGCGAGCTCCGGG
GCCTACTCTCCCTCTCCGCCCAACTCAAAGCCACGTACAAGTCCTCCTCC
CCTTCCTCCCTCCCTCGCCCCCTGACGGGAACATCCGTGAGCATGATCTT
CCAAAAACGGAGCACGCGTACCCGTGTCTCCACAGAGACGGGCATGGCTA
TGCTAGGCGGACATGCCCTTTTTCTTGGTCCACAAGACATTCAATTAGGG
GTGAACGAGTCCTTGCGTGATACGGCGGCTGTCCTCTCTCGCTTCAACTC
CCTCATCCTGGCCCGAGTGTTTGCGCATCCCGACGTGCAAATGCTGGCAA
AGCACTCCTCGGTGCCTGTGATCAATGCTCTGTCCGACTTGTACCACCCA
CTGCAAGCCCTGGCCGATTTGCTGACCCTGGAGGAGCACTTCGGGGAGGG
CGGGATGGAGGGCAAGGTCCTGGCGTGGGTCGGTGACGGGAATAACGTCC
TCCACGACCTGGCCATGGGCGCAGTGCGGCTGGGAATGCATGTGCGGGTG
GCCTGCCCGGAAGGGTACGAGCCAGACGCGGAGGTAATGAAGAAGGTGCA
AGGCCACGCGCAGAGGAAGGGAGGGTCGTTGATGATGACACGAGACCCAA
TGGCGGCCGTGGAGGGGGCGAATGTGGTGGTGACCGATACCTGGGTGAGT
ATGGGCCAGGAAGAGGAGTACGAGAAGCGGATGCGGGACTTTGAGGGTTT
TCAGGTCAACAAAGCCATGATGGAGAAGGGGGCAGGGAAGGAGGGAGGGA
AAGCAGGGTGCGTGTTTTTGCATTGTCTCCCTCGGCATCCGGAGGAGGTG
ACGGACGAGGTGTTTTATGATGAGGAAAGAAGTCTGGTCTTCCCCGAGGC
GGAGAATCGGATGTGGACGGTCATGGCCGTCATGCTTTCGTTGGTGGGGA
AGTAG
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Synonyms
Publications