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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:1155161..1157011 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04260.1 vs.
Match: EWM28738.1 (aurora kinase a [Nannochloropsis gaditana]) HSP 1 Score: 765.4 bits (1975), Expect = 1.300e-217 Identity = 397/568 (69.89%), Postives = 447/568 (78.70%), Query Frame = 0
Query: 41 SPLPNTAMATT------VETPVKPPPTSSPWTRDDFDFGNPPKPIGLGRFGHVYAAKERRSGKEVAIKVLFKKELETCGVVKQLRQEIEVHCRLRHPNIVRMFGWFQDPHRVYVVMSLGVGGDLLKFLRAQPQRRLPEPQAAFYVRQLLDALTYLHGQGIIHRDLKPENLLLDRRGHLLLCDFGWCTSSKRLRQTVCGTQGDYLAPEVLAREPYGPSVDLWTAGVLAFELLHGRTPFERRRADEKNG-------------ASGEEEEDSESSDEEMVCERGQRIHFREDLTDDACHFVMRVLQSESILRPSLEEALADPWLDESRVAPPTTLPTPLASRYSSSIADSENSSGSSDSNSPSTPSFL-ARPPRLP--PPSPSPSSSPSSSSPTSSSSSSPPSSSLKPRWTKTDFIFRKEPIGKGRYGQVFMAKEKVTQKIVAIKVLYKQQLESDGVWHQVKNEIEIHSRLSHPHIVKCHGYFHDESRLYMVMDYCPMELYRLLQKCPGGRFREGEAARYVRQLCSALMFLHVQGIIHRDLKPENLLCASGGELMLADFGWCVGAVKGGGG 587
S LP +M T +ETP+K P SSPWTRDDFDFG+PP+PIG GRFGHV+AAKE+RS K V IKVLFKKELE CGVVKQLRQEIEVHC+LRHPNI+RMFGWFQDPHRVYVVMSL GGDLLK+LRAQPQRRL EPQAAFY+RQLLDALTYLHGQGIIHRDLKPENLLL+RRGHLLLCDFGWCTSSKRLRQTVCGTQGDYLAPEVLAREPYGPSVDLWTAGV+AFELLHGRTPFERRR+DEK G A G EED ESSDEE++ ERGQRIHFREDLTD+AC+F+MRVLQSE LRPSLEEALADPWLDES VAPP + L SR + S+++ PS + + PP LP P P+P S + S+P S K W++ DF F PIG+GRYG V+MA+EK T + VA+KVL+K QLE+DGVWHQ+KNE+EIH +L H HIV+CHGYFHDE RLY+VM+YCP+ELYR LQ CPGGRFRE EAA+Y+ QL AL FLH QGIIHRDLKPENLL G+L+LADFGWCVGAV+G G
Sbjct: 20 STLPTPSMTQTGPRVTGMETPIKAPSRSSPWTRDDFDFGSPPQPIGQGRFGHVFAAKEKRSNKVVGIKVLFKKELEACGVVKQLRQEIEVHCKLRHPNIIRMFGWFQDPHRVYVVMSLAEGGDLLKYLRAQPQRRLAEPQAAFYMRQLLDALTYLHGQGIIHRDLKPENLLLNRRGHLLLCDFGWCTSSKRLRQTVCGTQGDYLAPEVLAREPYGPSVDLWTAGVMAFELLHGRTPFERRRSDEKIGGGQSTARDATDQLAHGAGEEDEESSDEELLSERGQRIHFREDLTDEACNFIMRVLQSEPSLRPSLEEALADPWLDESNVAPPVAFSSFLVSRKRPGC----GVTAKSNTDFSKLPSCIQSHPPSLPGDPLYPAPPLSSTDSTPLVIQPILCSDKSGK-GWSRHDFAFNPNPIGRGRYGSVYMAREKKTGRRVAVKVLHKAQLEADGVWHQIKNEVEIHCKLRHRHIVRCHGYFHDELRLYLVMEYCPVELYRKLQSCPGGRFRENEAAKYIMQLIEALQFLHGQGIIHRDLKPENLLLGPTGDLLLADFGWCVGAVRGSHG 582
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04260.1 ID=NO04G04260.1|Name=NO04G04260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp
CTTACTAAGCCTTGTTCATTTTTTCCCCGCCCCCGTGCCCTTGCCACAGA
GCATATACTCCCTGAACATATCCCTTTAAATATGCATTTTTCTGCATCCT
ACCAGGAAGGGCACTTTATGCCGTGCCAGTCGATCTATATCAGGGGTGCC
TTCTGTAATTCAAAAATGTTTTGCCCATCACGGCCCACACACATCCCCTT
ATCCCCACTCCCCAACACAGCCATGGCGACGACAGTCGAGACGCCTGTCA
AGCCTCCGCCCACGTCTTCTCCCTGGACGCGGGACGACTTCGACTTTGGC
AATCCCCCCAAGCCTATCGGGCTGGGTCGATTCGGGCATGTCTACGCTGC
CAAGGAGCGCCGCAGCGGCAAGGAAGTGGCCATCAAAGTCCTTTTTAAAA
AGGAGCTGGAAACCTGCGGCGTGGTCAAGCAGCTCCGGCAAGAGATTGAG
GTACATTGCCGACTTCGGCACCCCAACATTGTGAGAATGTTTGGCTGGTT
TCAGGATCCGCACCGTGTGTATGTGGTCATGTCCTTAGGGGTGGGAGGGG
ACCTGCTCAAGTTCCTGCGGGCTCAACCACAACGACGACTCCCCGAGCCC
CAGGCCGCCTTCTACGTACGACAATTGCTCGATGCCCTCACGTATTTGCA
CGGACAAGGCATCATTCACCGGGACTTAAAACCAGAAAATTTGCTGTTGG
ACCGCCGAGGGCACTTGTTGCTGTGTGACTTTGGGTGGTGCACTTCGAGC
AAGCGGTTGCGACAGACGGTATGTGGGACTCAGGGGGATTATCTGGCACC
GGAGGTCTTGGCGAGGGAACCGTACGGCCCAAGTGTAGATTTGTGGACTG
CGGGGGTGTTGGCTTTTGAATTGCTGCATGGTCGGACGCCATTTGAACGG
CGGAGGGCTGATGAGAAGAATGGTGCCAGCGGGGAGGAGGAAGAGGACAG
TGAGAGCAGTGATGAAGAGATGGTTTGTGAACGAGGGCAACGGATTCATT
TTAGGGAAGACTTGACGGATGACGCTTGTCATTTCGTGATGCGGGTGTTG
CAGTCGGAGTCGATTTTGCGCCCCTCCTTGGAAGAAGCACTTGCAGACCC
CTGGCTGGACGAGAGCCGCGTGGCCCCGCCAACCACATTACCTACACCAC
TAGCATCACGCTACAGCAGCAGCATTGCTGATAGTGAAAACAGCAGCGGC
AGCTCGGACAGCAACAGCCCCTCTACCCCCTCCTTCCTCGCCCGCCCCCC
CCGGCTCCCTCCCCCCTCCCCCTCCCCTTCGTCTTCCCCTTCCTCCTCCT
CCCCAACCTCCTCTTCCTCTTCCTCCCCGCCTTCCTCCAGCCTCAAACCC
CGCTGGACCAAAACCGACTTCATCTTCCGCAAGGAGCCCATCGGAAAAGG
CCGATACGGACAAGTCTTTATGGCGAAAGAAAAAGTCACCCAAAAAATCG
TTGCAATCAAGGTACTCTATAAACAACAATTGGAATCGGATGGGGTCTGG
CATCAAGTCAAGAACGAGATCGAGATTCATTCCCGGCTATCTCACCCACA
CATTGTTAAATGTCACGGGTACTTCCACGACGAATCCCGCTTGTACATGG
TCATGGATTATTGTCCGATGGAGCTGTACAGGCTGTTGCAAAAATGCCCG
GGGGGACGGTTTAGAGAGGGGGAGGCGGCGAGGTACGTCCGACAGTTGTG
TTCGGCGCTCATGTTTTTGCATGTCCAGGGCATTATACACCGGGATCTCA
AGCCGGAGAATTTGTTGTGTGCCTCGGGGGGCGAGTTGATGTTGGCGGAT
TTTGGGTGGTGTGTGGGGGCGGTGAAGGGGGGGGGGGGGAGGGAGGATTG
A back to topprotein sequence of NO04G04260.1 >NO04G04260.1-protein ID=NO04G04260.1-protein|Name=NO04G04260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MHFSASYQEGHFMPCQSIYIRGAFCNSKMFCPSRPTHIPLSPLPNTAMAT
TVETPVKPPPTSSPWTRDDFDFGNPPKPIGLGRFGHVYAAKERRSGKEVA
IKVLFKKELETCGVVKQLRQEIEVHCRLRHPNIVRMFGWFQDPHRVYVVM
SLGVGGDLLKFLRAQPQRRLPEPQAAFYVRQLLDALTYLHGQGIIHRDLK
PENLLLDRRGHLLLCDFGWCTSSKRLRQTVCGTQGDYLAPEVLAREPYGP
SVDLWTAGVLAFELLHGRTPFERRRADEKNGASGEEEEDSESSDEEMVCE
RGQRIHFREDLTDDACHFVMRVLQSESILRPSLEEALADPWLDESRVAPP
TTLPTPLASRYSSSIADSENSSGSSDSNSPSTPSFLARPPRLPPPSPSPS
SSPSSSSPTSSSSSSPPSSSLKPRWTKTDFIFRKEPIGKGRYGQVFMAKE
KVTQKIVAIKVLYKQQLESDGVWHQVKNEIEIHSRLSHPHIVKCHGYFHD
ESRLYMVMDYCPMELYRLLQKCPGGRFREGEAARYVRQLCSALMFLHVQG
IIHRDLKPENLLCASGGELMLADFGWCVGAVKGGGGRED* back to topmRNA from alignment at chr4:1155161..1157011- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04260.1 ID=NO04G04260.1|Name=NO04G04260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp|location=Sequence derived from alignment at chr4:1155161..1157011- (Nannochloropsis oceanica)
CTTACTAAGCCTTGTTCATTTTTTCCCCGCCCCCGTGCCCTTGCCACAGA
GCATATACTCCCTGAACATATCCCTTTAAATATGCATTTTTCTGCATCCT
ACCAGGAAGGGCACTTTATGCCGTGCCAGTCGATCTATATCAGGGGTGCC
TTCTGTAATTCAAAAATGTTTTGCCCATCACGGCCCACACACATCCCCTT
ATCCCCACTCCCCAACACAGCCATGGCGACGACAGTCGAGACGCCTGTCA
AGCCTCCGCCCACGTCTTCTCCCTGGACGCGGGACGACTTCGACTTTGGC
AATCCCCCCAAGCCTATCGGGCTGGGTCGATTCGGGCATGTCTACGCTGC
CAAGGAGCGCCGCAGCGGCAAGGAAGTGGCCATCAAAGTCCTTTTTAAAA
AGGAGCTGGAAACCTGCGGCGTGGTCAAGCAGCTCCGGCAAGAGATTGAG
GTACATTGCCGACTTCGGCACCCCAACATTGTGAGAATGTTTGGCTGGTT
TCAGGATCCGCACCGTGTGTATGTGGTCATGTCCTTAGGGGTGGGAGGGG
ACCTGCTCAAGTTCCTGCGGGCTCAACCACAACGACGACTCCCCGAGCCC
CAGGCCGCCTTCTACGTACGACAATTGCTCGATGCCCTCACGTATTTGCA
CGGACAAGGCATCATTCACCGGGACTTAAAACCAGAAAATTTGCTGTTGG
ACCGCCGAGGGCACTTGTTGCTGTGTGACTTTGGGTGGTGCACTTCGAGC
AAGCGGTTGCGACAGACGGTATGTGGGACTCAGGGGGATTATCTGGCACC
GGAGGTCTTGGCGAGGGAACCGTACGGCCCAAGTGTAGATTTGTGGACTG
CGGGGGTGTTGGCTTTTGAATTGCTGCATGGTCGGACGCCATTTGAACGG
CGGAGGGCTGATGAGAAGAATGGTGCCAGCGGGGAGGAGGAAGAGGACAG
TGAGAGCAGTGATGAAGAGATGGTTTGTGAACGAGGGCAACGGATTCATT
TTAGGGAAGACTTGACGGATGACGCTTGTCATTTCGTGATGCGGGTGTTG
CAGTCGGAGTCGATTTTGCGCCCCTCCTTGGAAGAAGCACTTGCAGACCC
CTGGCTGGACGAGAGCCGCGTGGCCCCGCCAACCACATTACCTACACCAC
TAGCATCACGCTACAGCAGCAGCATTGCTGATAGTGAAAACAGCAGCGGC
AGCTCGGACAGCAACAGCCCCTCTACCCCCTCCTTCCTCGCCCGCCCCCC
CCGGCTCCCTCCCCCCTCCCCCTCCCCTTCGTCTTCCCCTTCCTCCTCCT
CCCCAACCTCCTCTTCCTCTTCCTCCCCGCCTTCCTCCAGCCTCAAACCC
CGCTGGACCAAAACCGACTTCATCTTCCGCAAGGAGCCCATCGGAAAAGG
CCGATACGGACAAGTCTTTATGGCGAAAGAAAAAGTCACCCAAAAAATCG
TTGCAATCAAGGTACTCTATAAACAACAATTGGAATCGGATGGGGTCTGG
CATCAAGTCAAGAACGAGATCGAGATTCATTCCCGGCTATCTCACCCACA
CATTGTTAAATGTCACGGGTACTTCCACGACGAATCCCGCTTGTACATGG
TCATGGATTATTGTCCGATGGAGCTGTACAGGCTGTTGCAAAAATGCCCG
GGGGGACGGTTTAGAGAGGGGGAGGCGGCGAGGTACGTCCGACAGTTGTG
TTCGGCGCTCATGTTTTTGCATGTCCAGGGCATTATACACCGGGATCTCA
AGCCGGAGAATTTGTTGTGTGCCTCGGGGGGCGAGTTGATGTTGGCGGAT
TTTGGGTGGTGTGTGGGGGCGGTGAAGGGGGGGGGGGGGAGGGAGGATTG
A back to topCoding sequence (CDS) from alignment at chr4:1155161..1157011- >NO04G04260.1 ID=NO04G04260.1|Name=NO04G04260.1|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at chr4:1155161..1157011- (Nannochloropsis oceanica)
ATGCATTTTTCTGCATCCTACCAGGAAGGGCACTTTATGCCGTGCCAGTC
GATCTATATCAGGGGTGCCTTCTGTAATTCAAAAATGTTTTGCCCATCAC
GGCCCACACACATCCCCTTATCCCCACTCCCCAACACAGCCATGGCGACG
ACAGTCGAGACGCCTGTCAAGCCTCCGCCCACGTCTTCTCCCTGGACGCG
GGACGACTTCGACTTTGGCAATCCCCCCAAGCCTATCGGGCTGGGTCGAT
TCGGGCATGTCTACGCTGCCAAGGAGCGCCGCAGCGGCAAGGAAGTGGCC
ATCAAAGTCCTTTTTAAAAAGGAGCTGGAAACCTGCGGCGTGGTCAAGCA
GCTCCGGCAAGAGATTGAGGTACATTGCCGACTTCGGCACCCCAACATTG
TGAGAATGTTTGGCTGGTTTCAGGATCCGCACCGTGTGTATGTGGTCATG
TCCTTAGGGGTGGGAGGGGACCTGCTCAAGTTCCTGCGGGCTCAACCACA
ACGACGACTCCCCGAGCCCCAGGCCGCCTTCTACGTACGACAATTGCTCG
ATGCCCTCACGTATTTGCACGGACAAGGCATCATTCACCGGGACTTAAAA
CCAGAAAATTTGCTGTTGGACCGCCGAGGGCACTTGTTGCTGTGTGACTT
TGGGTGGTGCACTTCGAGCAAGCGGTTGCGACAGACGGTATGTGGGACTC
AGGGGGATTATCTGGCACCGGAGGTCTTGGCGAGGGAACCGTACGGCCCA
AGTGTAGATTTGTGGACTGCGGGGGTGTTGGCTTTTGAATTGCTGCATGG
TCGGACGCCATTTGAACGGCGGAGGGCTGATGAGAAGAATGGTGCCAGCG
GGGAGGAGGAAGAGGACAGTGAGAGCAGTGATGAAGAGATGGTTTGTGAA
CGAGGGCAACGGATTCATTTTAGGGAAGACTTGACGGATGACGCTTGTCA
TTTCGTGATGCGGGTGTTGCAGTCGGAGTCGATTTTGCGCCCCTCCTTGG
AAGAAGCACTTGCAGACCCCTGGCTGGACGAGAGCCGCGTGGCCCCGCCA
ACCACATTACCTACACCACTAGCATCACGCTACAGCAGCAGCATTGCTGA
TAGTGAAAACAGCAGCGGCAGCTCGGACAGCAACAGCCCCTCTACCCCCT
CCTTCCTCGCCCGCCCCCCCCGGCTCCCTCCCCCCTCCCCCTCCCCTTCG
TCTTCCCCTTCCTCCTCCTCCCCAACCTCCTCTTCCTCTTCCTCCCCGCC
TTCCTCCAGCCTCAAACCCCGCTGGACCAAAACCGACTTCATCTTCCGCA
AGGAGCCCATCGGAAAAGGCCGATACGGACAAGTCTTTATGGCGAAAGAA
AAAGTCACCCAAAAAATCGTTGCAATCAAGGTACTCTATAAACAACAATT
GGAATCGGATGGGGTCTGGCATCAAGTCAAGAACGAGATCGAGATTCATT
CCCGGCTATCTCACCCACACATTGTTAAATGTCACGGGTACTTCCACGAC
GAATCCCGCTTGTACATGGTCATGGATTATTGTCCGATGGAGCTGTACAG
GCTGTTGCAAAAATGCCCGGGGGGACGGTTTAGAGAGGGGGAGGCGGCGA
GGTACGTCCGACAGTTGTGTTCGGCGCTCATGTTTTTGCATGTCCAGGGC
ATTATACACCGGGATCTCAAGCCGGAGAATTTGTTGTGTGCCTCGGGGGG
CGAGTTGATGTTGGCGGATTTTGGGTGGTGTGTGGGGGCGGTGAAGGGGG
GGGGGGGGAGGGAGGATTGA back to top
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