NO04G04210.1, NO04G04210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04210.1
Unique NameNO04G04210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1623
Alignment locationchr4:1146356..1148162 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1146356..1148162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04210.1 vs.
Match: EWM28666.1 (retinol retinaldehyde reductase [Nannochloropsis gaditana])

HSP 1 Score: 607.1 bits (1564), Expect = 3.700e-170
Identity = 292/361 (80.89%), Postives = 327/361 (90.58%), Query Frame = 0 
Query:    1 MGLLNLINNIAHIPVFEDVCYYNFFFWAWFWGPLLGGLVFLHDLTTGFFFSIFYVKPSLDKVIFITGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKECEALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDNLKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGAKWGQGSAPVGVS 362
            MGL+N  NN+AHIPVFED+CYYNFFFWAWFWGPLLG LVFLHD TTGFFFSIFYV+PS DKV+ ITGCDTGFGK+LAL L  KGFKVYA+CL Q++AD LKKEC+AL T+ILDVTKEDQVA V A + AA+PQG+FALVNNAGVSRAGLIDWLN+SD+RFCMEVNYF++VSVTKAFLPSLKKSKGR+IMMSSAAGVACGYPVT AYS+SK A+E+F+SALRQELR WGITVSTINPGFHRTEIN NA+  LK TFEKAP+E+QE+YGE+YL A + A TR+TET ALDPKNVIRAY+HA TSTRPKVQYRVGIDAKGLFPFLQIFPLRVGE+ AYYASTT  MRV+RGA+W QG APVG+S
Sbjct:    1 MGLINWANNVAHIPVFEDMCYYNFFFWAWFWGPLLGALVFLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGMRVVRGARWDQGKAPVGMS 361
The following BLAST results are available for this feature:
BLAST of NO04G04210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28666.13.700e-17080.89retinol retinaldehyde reductase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04210NO04G04210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04210.1NO04G04210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04210.1.cds1NO04G04210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04210.1.cds2NO04G04210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04210.1 ID=NO04G04210.1|Name=NO04G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
AACCACAGCATCCCTTCCCAACCTTTTGCTCGACTAGTTCGGTGTACGCA
CGTCCTTTCGAGGGCCCGTTCTACGTCGCCACCAAGCAGCCACCACAACC
AGACAAGCATGGGATTATTGAACTTGATCAACAATATAGCACATATCCCC
GTGTTTGAAGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGGTTTTG
GGGACCTCTCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCACGGGCT
TCTTCTTCTCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGATCTTT
ATCACGGGATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGCCTGCA
AAACAAAGGCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAACGCGG
ACGCGCTCAAGAAGGAGTGCGAAGCCTTGCACACCGTCATCCTGGACGTG
ACGAAGGAGGATCAAGTCGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAA
CCCCCAGGGGCTCTTCGCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGG
GACTGATTGATTGGCTTAACATCTCCGACTATCGGTTTTGCATGGAAGTG
AACTACTTCGCCATGGTCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAA
GAAGAGCAAGGGTCGGGTGATCATGATGTCCTCTGCTGCGGGCGTGGCGT
GTGGATACCCTGTCACTAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAA
ATCTTCTCCTCGGCCCTGCGACAGGAACTCCGACCTTGGGGCATCACTGT
CTCTACCATCAACCCCGGCTTTCACAGAACTGAGATCAATCGCAACGCCT
CGGATAACTTGAAACTGACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAG
CAGTACGGAGAGAAGTACCTGCATGCCGCCTCCGCTGCGATGACCCGCTA
TACTGAGACCAATGCCCTGGACCCCAAGAACGTCATTCGGGCCTACATCC
ACGCCACCACCTCCACCCGACCTAAGGTTCAGTACCGTGTCGGTATTGAT
GCCAAGGGCCTCTTCCCGTTCTTGCAGATCTTCCCGTTGCGGGTAGGAGA
AGTAATAGCTTATTACGCGTCGACGACGCCCGAGATGCGTGTAATTCGTG
GAGCGAAATGGGGCCAGGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTG
GCAGCGACTCAAAATGTTTAGAATGAACTTGAAACCAATTGGCGTGATTA
TATAGACTGTGAAGGGGGGGAAATATGGGGGACAATAGGATATGAGGTGG
TAAGACCCGTAGAGAAAAGCACGATTGACGAGATCGCGCTTCTTCCACAA
GGAAGTGAAGAACATGCGAAATCGGAGGTGCAATATACGTAACGTGAAGC
GATGGAAAGCAACATAGAGAAAGTTATGTGTGTGAAAAAGGAAGTAATGG
AAAGGAGCAGAATCGACACTATCCTAAACAAAAAGATAAGAAACGAAGAG
GATGAAAAGCGATCGTAGGAAAGATGCTGCTGTCAGAGAAATATGTTTGT
GTTGGGTCAATTGACATTCCGAGAGCCATGTAGGAACTCTTCACTTCAAG
GCAAAACGGTATACACCCCCGTC
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protein sequence of NO04G04210.1

>NO04G04210.1-protein ID=NO04G04210.1-protein|Name=NO04G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MGLLNLINNIAHIPVFEDVCYYNFFFWAWFWGPLLGGLVFLHDLTTGFFF
SIFYVKPSLDKVIFITGCDTGFGKTLALRLQNKGFKVYATCLNQQNADAL
KKECEALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLI
DWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGY
PVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDN
LKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHAT
TSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGAK
WGQGSAPVGVSPAVAATQNV*
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mRNA from alignment at chr4:1146356..1148162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04210.1 ID=NO04G04210.1|Name=NO04G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp|location=Sequence derived from alignment at chr4:1146356..1148162+ (Nannochloropsis oceanica)
AACCACAGCATCCCTTCCCAACCTTTTGCTCGACTAGTTCGGTGTACGCA
CGTCCTTTCGAGGGCCCGTTCTACGTCGCCACCAAGCAGCCACCACAACC
AGACAAGCATGGGATTATTGAACTTGATCAACAATATAGCACATATCCCC
GTGTTTGAAGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGGTTTTG
GGGACCTCTCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCACGGGCT
TCTTCTTCTCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGATCTTT
ATCACGGGATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGCCTGCA
AAACAAAGGCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAACGCGG
ACGCGCTCAAGAAGGAGGTGAGCTTGGAACCCGAAGTGGGGGGGGATCCT
TCATTCTCTCTCTTTTATCATATTGATAGCTGACATCTTCTCAAATTCTA
CTCTTCCCCGTGTCTTCCTCCCCCTCCCTCCGCTCACGTCGATTATCTTC
CCTCTTTGATCAACCGCTCCGTCCCTCCCTTTCCCCGTTTCCACGAAATA
GTGCGAAGCCTTGCACACCGTCATCCTGGACGTGACGAAGGAGGATCAAG
TCGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAACCCCCAGGGGCTCTTC
GCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGGGACTGATTGATTGGCT
TAACATCTCCGACTATCGGTTTTGCATGGAAGTGAACTACTTCGCCATGG
TCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAAGAAGAGCAAGGGTCGG
GTGATCATGATGTCCTCTGCTGCGGGCGTGGCGTGTGGATACCCTGTCAC
TAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAAATCTTCTCCTCGGCCC
TGCGACAGGAACTCCGACCTTGGGGCATCACTGTCTCTACCATCAACCCC
GGCTTTCACAGAACTGAGATCAATCGCAACGCCTCGGATAACTTGAAACT
GACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAGCAGTACGGAGAGAAGT
ACCTGCATGCCGCCTCCGCTGCGATGACCCGCTATACTGAGACCAATGCC
CTGGACCCCAAGAACGTCATTCGGGCCTACATCCACGCCACCACCTCCAC
CCGACCTAAGGTTCAGTACCGTGTCGGTATTGATGCCAAGGGCCTCTTCC
CGTTCTTGCAGATCTTCCCGTTGCGGGTAGGAGAAGTAATAGCTTATTAC
GCGTCGACGACGCCCGAGATGCGTGTAATTCGTGGAGCGAAATGGGGCCA
GGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTGGCAGCGACTCAAAATG
TTTAGAATGAACTTGAAACCAATTGGCGTGATTATATAGACTGTGAAGGG
GGGGAAATATGGGGGACAATAGGATATGAGGTGGTAAGACCCGTAGAGAA
AAGCACGATTGACGAGATCGCGCTTCTTCCACAAGGAAGTGAAGAACATG
CGAAATCGGAGGTGCAATATACGTAACGTGAAGCGATGGAAAGCAACATA
GAGAAAGTTATGTGTGTGAAAAAGGAAGTAATGGAAAGGAGCAGAATCGA
CACTATCCTAAACAAAAAGATAAGAAACGAAGAGGATGAAAAGCGATCGT
AGGAAAGATGCTGCTGTCAGAGAAATATGTTTGTGTTGGGTCAATTGACA
TTCCGAGAGCCATGTAGGAACTCTTCACTTCAAGGCAAAACGGTATACAC
CCCCGTC
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Coding sequence (CDS) from alignment at chr4:1146356..1148162+

>NO04G04210.1 ID=NO04G04210.1|Name=NO04G04210.1|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr4:1146356..1148162+ (Nannochloropsis oceanica)
ATGGGATTATTGAACTTGATCAACAATATAGCACATATCCCCGTGTTTGA
AGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGGTTTTGGGGACCTC
TCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCACGGGCTTCTTCTTC
TCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGATCTTTATCACGGG
ATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGCCTGCAAAACAAAG
GCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAACGCGGACGCGCTC
AAGAAGGAGTGCGAAGCCTTGCACACCGTCATCCTGGACGTGACGAAGGA
GGATCAAGTCGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAACCCCCAGG
GGCTCTTCGCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGGGACTGATT
GATTGGCTTAACATCTCCGACTATCGGTTTTGCATGGAAGTGAACTACTT
CGCCATGGTCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAAGAAGAGCA
AGGGTCGGGTGATCATGATGTCCTCTGCTGCGGGCGTGGCGTGTGGATAC
CCTGTCACTAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAAATCTTCTC
CTCGGCCCTGCGACAGGAACTCCGACCTTGGGGCATCACTGTCTCTACCA
TCAACCCCGGCTTTCACAGAACTGAGATCAATCGCAACGCCTCGGATAAC
TTGAAACTGACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAGCAGTACGG
AGAGAAGTACCTGCATGCCGCCTCCGCTGCGATGACCCGCTATACTGAGA
CCAATGCCCTGGACCCCAAGAACGTCATTCGGGCCTACATCCACGCCACC
ACCTCCACCCGACCTAAGGTTCAGTACCGTGTCGGTATTGATGCCAAGGG
CCTCTTCCCGTTCTTGCAGATCTTCCCGTTGCGGGTAGGAGAAGTAATAG
CTTATTACGCGTCGACGACGCCCGAGATGCGTGTAATTCGTGGAGCGAAA
TGGGGCCAGGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTGGCAGCGAC
TCAAAATGTTTAG
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Synonyms
Publications