NO04G04170.1, NO04G04170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04170.1
Unique NameNO04G04170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2344
Alignment locationchr4:1138994..1141337 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1138994..1141337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04170.1 vs.
Match: EWM28749.1 (hypothetical protein Naga_100002g148 [Nannochloropsis gaditana])

HSP 1 Score: 456.1 bits (1172), Expect = 2.200e-124
Identity = 266/488 (54.51%), Postives = 320/488 (65.57%), Query Frame = 0 
Query:  276 LITCSPSLLSLHCCALALAHYIPFSSTSSSSLSSPLALDCVIAALSLLEPIWDVSTTLTELTNGPSFGGGLQGWKKPELLLPPTLTDEGRGVILPLTGGEDRAELFEIARGMWVRFREACRGQEERRAGERKKEETTKNKQKIISLSPSSPPPHPPPPP--------PSHLVIQLLTRIRLAWSTARAAHKEKEAAQRLGRAALALVRSGLKLGEVNGEVLGHLLPFCFALMEEYEKEEAQILGYTIWCFAANKTTGTELAWFLPIQMQVFQRGLKVLVKQPSVLRLLLFCTTELLRLTLAVQQEQQREEGGGGGGKGGAGWRDVVLEHLLAALARASPISCSNDQSIVFALLEGMYRLLPLYKDGFFIVRYLRALIQVLTFTPLEEGDDAVRVVALRTLLLVLGQCQVVIHQHALETLAQVLRLYILLFRQGNNQTEGDKASMALCREVAGMLRVGCKGQARQGLEAFVQGLREEGGYCLELSGIWP 756
            L+  +P LLSLHCCAL+L            ++SSP +LDCV+AALSLLEP W+V  TL ELT  PS G GLQGW+    LLPP+        I PLTG  D   L ++AR MW +F  ACR Q +     +  +E  K  +++     S  P  PP P         P+ L+ QLL R+R AWS ARA H++K A  RLGRA LALVRSGL   EVN +VLGHLLP CFALMEEYE+EE Q+LGY  WCFAA+K+ G  L+ FLPIQ+QVF+RGLKVLVK+  VLRLLLFCTTELLRL L      +R +           +RD +L+ LLAAL RASP   S D  I FALLEG++RL+PLY   + +VRYLRAL Q L F PLEEGD AVRV ALRT+LLVL QC V+IHQHA ETLAQVLRLY+LL R+G  QTE D    ++CR+VA +LR  C       LE+F++ LREEGGY  EL  IWP
Sbjct:    2 LVARTPGLLSLHCCALSLQRL---------AVSSPSSLDCVLAALSLLEPSWEVDATLIELTARPSLGCGLQGWRMTPELLPPS--GGCTKWIKPLTG-TDNDPLAQLARDMWAQFHRACRVQVQSIPDPQGAQEE-KGSRRLRMAGASEVPLSPPIPKTLTASPLRPAPLLAQLLERMRTAWSKARATHEQKAAGLRLGRAGLALVRSGLGADEVNADVLGHLLPLCFALMEEYEQEELQVLGYVTWCFAAHKSRGPALSSFLPIQVQVFRRGLKVLVKRCVVLRLLLFCTTELLRLNLPSATRGERRDPTRDQRDADGDFRDAILQDLLAALTRASP---SKDPRITFALLEGLHRLVPLYSQDYHLVRYLRALTQALMFVPLEEGDAAVRVAALRTILLVLAQCHVMIHQHAFETLAQVLRLYLLLVRRGEKQTEADHIVSSMCRDVANVLREKCPRHTLVNLESFIKTLREEGGYDTELDSIWP 473
The following BLAST results are available for this feature:
BLAST of NO04G04170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28749.12.200e-12454.51hypothetical protein Naga_100002g148 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04170NO04G04170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04170.1NO04G04170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04170.1.cds1NO04G04170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04170.1 ID=NO04G04170.1|Name=NO04G04170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2344bp
TCAGGATTATGGAAGACATTCTGATTCACGAGGTGAAACAGGGGTCCCAT
CGCTTTCGGCCGCAACAGCATGACGAGCATGAATGGCTTCCGCCCGAGGC
GTTGCGATTGGAACAAGAAGGGGTGGCCGCGGCCGACGCCGAGGCGTCCT
GGCGGGACTTGCAAGAGAAGCAGAGTCGCAAAGAGAAGGAAAGCCATCCG
AAGATATTGCAGCCACGCTACACGCCGAGATTAGCGGCCTTGGTTTTGGA
GTACACTAACTGGGTAGAGCAAGGAGCGTGGGCGAGTGCGCGGACCTGCT
TGGACCACGCCCTGCCTCCTCCTTGCTCGCCCTCCTCCTCATCATCAAGC
AACAGCGACGAAGATGTCATATACGCTTTGCAAGACATAGGCACTGCGCT
ACTCTCCTCAATCAAGAAGCGCCCTGGGTGGGGCATCACCATCGTCAACG
ACGAATCACAATACCACCACCTAGTTATCAAGGGCCACGGCGGCGCAAGC
GCTGCGCCCTCCGTGCTGAAATCCGAGATTTTGTCGCCGTTGTGCGCAGC
AGTAAGAGAAGCCTTAATAAGAAGAAGAAGAACCATTTCCAATACCATGA
AATTGGAAGGGGAGGGAGGAGCGTTGATCTTAGCTCTGGCGATGGAGGGG
GGAAGACTGGATGGCTCGCAGCAGCAGCAACAGCACCAACAGCCCCACGA
GCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAAGATGATGGCGACAAAGATGAGCACAGCGGCAAT
CTCGACGAAGACGTCATTCATGCGGCCCTCGCGCTCATCACCTGTTCTCC
GAGCCTGCTCTCCCTCCATTGTTGCGCGCTGGCCCTGGCCCATTACATTC
CCTTTTCCTCCACGTCCTCCTCGTCCTTGTCCTCCCCTCTAGCGTTGGAC
TGTGTAATCGCCGCATTATCACTGCTTGAACCCATTTGGGATGTCAGTAC
AACACTCACCGAACTTACAAATGGCCCCTCGTTTGGTGGAGGGTTACAAG
GGTGGAAAAAGCCAGAGCTGCTTCTTCCTCCCACACTCACGGACGAGGGA
AGAGGGGTCATCCTGCCTTTGACGGGGGGGGAGGATCGTGCAGAGCTTTT
TGAGATAGCTCGTGGAATGTGGGTGCGTTTCCGTGAAGCCTGTCGTGGTC
AAGAAGAAAGACGGGCTGGCGAGAGGAAAAAGGAGGAGACGACGAAAAAC
AAACAAAAGATAATCTCTCTCTCTCCTTCCTCTCCTCCTCCTCATCCTCC
TCCTCCTCCACCTTCCCATCTCGTCATTCAACTCCTCACCCGAATACGCC
TAGCTTGGTCCACCGCTCGAGCCGCGCATAAAGAGAAGGAAGCAGCCCAG
CGCCTCGGGCGCGCTGCCCTCGCTTTGGTACGAAGCGGGTTAAAATTAGG
AGAGGTGAATGGTGAAGTGCTGGGGCATTTGCTTCCGTTCTGTTTTGCTT
TGATGGAGGAGTATGAAAAGGAAGAAGCACAGATTTTGGGGTATACCATT
TGGTGCTTCGCGGCAAATAAGACGACGGGGACAGAGCTTGCATGGTTCTT
ACCGATACAGATGCAGGTTTTTCAGAGGGGATTAAAGGTCTTGGTGAAAC
AGCCGAGTGTGCTCCGACTGCTTTTGTTTTGTACAACGGAGCTGTTAAGG
TTGACATTGGCGGTACAGCAAGAGCAACAGCGAGAAGAGGGGGGGGGGGG
AGGGGGGAAAGGGGGGGCAGGGTGGCGTGATGTAGTCCTTGAACATTTGC
TTGCAGCGTTGGCCCGCGCGTCCCCAATTAGCTGTAGTAATGACCAGAGT
ATTGTGTTTGCCTTGTTGGAAGGGATGTATCGTCTCCTGCCCCTATACAA
AGACGGTTTCTTCATCGTCCGGTACCTACGGGCATTAATCCAGGTCTTGA
CTTTCACGCCCTTGGAAGAAGGAGATGATGCCGTGCGTGTGGTAGCCCTC
CGCACCCTCCTCCTCGTCCTCGGGCAATGCCAAGTTGTGATCCATCAACA
TGCGCTCGAGACGCTTGCGCAAGTGCTGCGACTGTATATCCTCTTGTTTC
GACAAGGAAATAATCAGACGGAGGGGGACAAGGCAAGCATGGCGTTATGT
CGGGAGGTGGCGGGAATGCTAAGGGTGGGGTGTAAGGGGCAGGCACGACA
AGGGCTCGAGGCCTTTGTCCAGGGACTGAGAGAGGAAGGGGGCTACTGCT
TGGAGCTAAGCGGGATCTGGCCAACTGAAAGTAGAAGTGGAATCGTGAAG
GAATTCCCCGAGAATAAAAAAGATAAATGAAATGAACGTGTACA
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protein sequence of NO04G04170.1

>NO04G04170.1-protein ID=NO04G04170.1-protein|Name=NO04G04170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=774bp
MEDILIHEVKQGSHRFRPQQHDEHEWLPPEALRLEQEGVAAADAEASWRD
LQEKQSRKEKESHPKILQPRYTPRLAALVLEYTNWVEQGAWASARTCLDH
ALPPPCSPSSSSSSNSDEDVIYALQDIGTALLSSIKKRPGWGITIVNDES
QYHHLVIKGHGGASAAPSVLKSEILSPLCAAVREALIRRRRTISNTMKLE
GEGGALILALAMEGGRLDGSQQQQQHQQPHEQQQQQQQQQQQQQQQQQQQ
QQQDDGDKDEHSGNLDEDVIHAALALITCSPSLLSLHCCALALAHYIPFS
STSSSSLSSPLALDCVIAALSLLEPIWDVSTTLTELTNGPSFGGGLQGWK
KPELLLPPTLTDEGRGVILPLTGGEDRAELFEIARGMWVRFREACRGQEE
RRAGERKKEETTKNKQKIISLSPSSPPPHPPPPPPSHLVIQLLTRIRLAW
STARAAHKEKEAAQRLGRAALALVRSGLKLGEVNGEVLGHLLPFCFALME
EYEKEEAQILGYTIWCFAANKTTGTELAWFLPIQMQVFQRGLKVLVKQPS
VLRLLLFCTTELLRLTLAVQQEQQREEGGGGGGKGGAGWRDVVLEHLLAA
LARASPISCSNDQSIVFALLEGMYRLLPLYKDGFFIVRYLRALIQVLTFT
PLEEGDDAVRVVALRTLLLVLGQCQVVIHQHALETLAQVLRLYILLFRQG
NNQTEGDKASMALCREVAGMLRVGCKGQARQGLEAFVQGLREEGGYCLEL
SGIWPTESRSGIVKEFPENKKDK*
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mRNA from alignment at chr4:1138994..1141337+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04170.1 ID=NO04G04170.1|Name=NO04G04170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2344bp|location=Sequence derived from alignment at chr4:1138994..1141337+ (Nannochloropsis oceanica)
TCAGGATTATGGAAGACATTCTGATTCACGAGGTGAAACAGGGGTCCCAT
CGCTTTCGGCCGCAACAGCATGACGAGCATGAATGGCTTCCGCCCGAGGC
GTTGCGATTGGAACAAGAAGGGGTGGCCGCGGCCGACGCCGAGGCGTCCT
GGCGGGACTTGCAAGAGAAGCAGAGTCGCAAAGAGAAGGAAAGCCATCCG
AAGATATTGCAGCCACGCTACACGCCGAGATTAGCGGCCTTGGTTTTGGA
GTACACTAACTGGGTAGAGCAAGGAGCGTGGGCGAGTGCGCGGACCTGCT
TGGACCACGCCCTGCCTCCTCCTTGCTCGCCCTCCTCCTCATCATCAAGC
AACAGCGACGAAGATGTCATATACGCTTTGCAAGACATAGGCACTGCGCT
ACTCTCCTCAATCAAGAAGCGCCCTGGGTGGGGCATCACCATCGTCAACG
ACGAATCACAATACCACCACCTAGTTATCAAGGGCCACGGCGGCGCAAGC
GCTGCGCCCTCCGTGCTGAAATCCGAGATTTTGTCGCCGTTGTGCGCAGC
AGTAAGAGAAGCCTTAATAAGAAGAAGAAGAACCATTTCCAATACCATGA
AATTGGAAGGGGAGGGAGGAGCGTTGATCTTAGCTCTGGCGATGGAGGGG
GGAAGACTGGATGGCTCGCAGCAGCAGCAACAGCACCAACAGCCCCACGA
GCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAAGATGATGGCGACAAAGATGAGCACAGCGGCAAT
CTCGACGAAGACGTCATTCATGCGGCCCTCGCGCTCATCACCTGTTCTCC
GAGCCTGCTCTCCCTCCATTGTTGCGCGCTGGCCCTGGCCCATTACATTC
CCTTTTCCTCCACGTCCTCCTCGTCCTTGTCCTCCCCTCTAGCGTTGGAC
TGTGTAATCGCCGCATTATCACTGCTTGAACCCATTTGGGATGTCAGTAC
AACACTCACCGAACTTACAAATGGCCCCTCGTTTGGTGGAGGGTTACAAG
GGTGGAAAAAGCCAGAGCTGCTTCTTCCTCCCACACTCACGGACGAGGGA
AGAGGGGTCATCCTGCCTTTGACGGGGGGGGAGGATCGTGCAGAGCTTTT
TGAGATAGCTCGTGGAATGTGGGTGCGTTTCCGTGAAGCCTGTCGTGGTC
AAGAAGAAAGACGGGCTGGCGAGAGGAAAAAGGAGGAGACGACGAAAAAC
AAACAAAAGATAATCTCTCTCTCTCCTTCCTCTCCTCCTCCTCATCCTCC
TCCTCCTCCACCTTCCCATCTCGTCATTCAACTCCTCACCCGAATACGCC
TAGCTTGGTCCACCGCTCGAGCCGCGCATAAAGAGAAGGAAGCAGCCCAG
CGCCTCGGGCGCGCTGCCCTCGCTTTGGTACGAAGCGGGTTAAAATTAGG
AGAGGTGAATGGTGAAGTGCTGGGGCATTTGCTTCCGTTCTGTTTTGCTT
TGATGGAGGAGTATGAAAAGGAAGAAGCACAGATTTTGGGGTATACCATT
TGGTGCTTCGCGGCAAATAAGACGACGGGGACAGAGCTTGCATGGTTCTT
ACCGATACAGATGCAGGTTTTTCAGAGGGGATTAAAGGTCTTGGTGAAAC
AGCCGAGTGTGCTCCGACTGCTTTTGTTTTGTACAACGGAGCTGTTAAGG
TTGACATTGGCGGTACAGCAAGAGCAACAGCGAGAAGAGGGGGGGGGGGG
AGGGGGGAAAGGGGGGGCAGGGTGGCGTGATGTAGTCCTTGAACATTTGC
TTGCAGCGTTGGCCCGCGCGTCCCCAATTAGCTGTAGTAATGACCAGAGT
ATTGTGTTTGCCTTGTTGGAAGGGATGTATCGTCTCCTGCCCCTATACAA
AGACGGTTTCTTCATCGTCCGGTACCTACGGGCATTAATCCAGGTCTTGA
CTTTCACGCCCTTGGAAGAAGGAGATGATGCCGTGCGTGTGGTAGCCCTC
CGCACCCTCCTCCTCGTCCTCGGGCAATGCCAAGTTGTGATCCATCAACA
TGCGCTCGAGACGCTTGCGCAAGTGCTGCGACTGTATATCCTCTTGTTTC
GACAAGGAAATAATCAGACGGAGGGGGACAAGGCAAGCATGGCGTTATGT
CGGGAGGTGGCGGGAATGCTAAGGGTGGGGTGTAAGGGGCAGGCACGACA
AGGGCTCGAGGCCTTTGTCCAGGGACTGAGAGAGGAAGGGGGCTACTGCT
TGGAGCTAAGCGGGATCTGGCCAACTGAAAGTAGAAGTGGAATCGTGAAG
GAATTCCCCGAGAATAAAAAAGATAAATGAAATGAACGTGTACA
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Coding sequence (CDS) from alignment at chr4:1138994..1141337+

>NO04G04170.1 ID=NO04G04170.1|Name=NO04G04170.1|organism=Nannochloropsis oceanica|type=CDS|length=2322bp|location=Sequence derived from alignment at chr4:1138994..1141337+ (Nannochloropsis oceanica)
ATGGAAGACATTCTGATTCACGAGGTGAAACAGGGGTCCCATCGCTTTCG
GCCGCAACAGCATGACGAGCATGAATGGCTTCCGCCCGAGGCGTTGCGAT
TGGAACAAGAAGGGGTGGCCGCGGCCGACGCCGAGGCGTCCTGGCGGGAC
TTGCAAGAGAAGCAGAGTCGCAAAGAGAAGGAAAGCCATCCGAAGATATT
GCAGCCACGCTACACGCCGAGATTAGCGGCCTTGGTTTTGGAGTACACTA
ACTGGGTAGAGCAAGGAGCGTGGGCGAGTGCGCGGACCTGCTTGGACCAC
GCCCTGCCTCCTCCTTGCTCGCCCTCCTCCTCATCATCAAGCAACAGCGA
CGAAGATGTCATATACGCTTTGCAAGACATAGGCACTGCGCTACTCTCCT
CAATCAAGAAGCGCCCTGGGTGGGGCATCACCATCGTCAACGACGAATCA
CAATACCACCACCTAGTTATCAAGGGCCACGGCGGCGCAAGCGCTGCGCC
CTCCGTGCTGAAATCCGAGATTTTGTCGCCGTTGTGCGCAGCAGTAAGAG
AAGCCTTAATAAGAAGAAGAAGAACCATTTCCAATACCATGAAATTGGAA
GGGGAGGGAGGAGCGTTGATCTTAGCTCTGGCGATGGAGGGGGGAAGACT
GGATGGCTCGCAGCAGCAGCAACAGCACCAACAGCCCCACGAGCAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAAGATGATGGCGACAAAGATGAGCACAGCGGCAATCTCGACGA
AGACGTCATTCATGCGGCCCTCGCGCTCATCACCTGTTCTCCGAGCCTGC
TCTCCCTCCATTGTTGCGCGCTGGCCCTGGCCCATTACATTCCCTTTTCC
TCCACGTCCTCCTCGTCCTTGTCCTCCCCTCTAGCGTTGGACTGTGTAAT
CGCCGCATTATCACTGCTTGAACCCATTTGGGATGTCAGTACAACACTCA
CCGAACTTACAAATGGCCCCTCGTTTGGTGGAGGGTTACAAGGGTGGAAA
AAGCCAGAGCTGCTTCTTCCTCCCACACTCACGGACGAGGGAAGAGGGGT
CATCCTGCCTTTGACGGGGGGGGAGGATCGTGCAGAGCTTTTTGAGATAG
CTCGTGGAATGTGGGTGCGTTTCCGTGAAGCCTGTCGTGGTCAAGAAGAA
AGACGGGCTGGCGAGAGGAAAAAGGAGGAGACGACGAAAAACAAACAAAA
GATAATCTCTCTCTCTCCTTCCTCTCCTCCTCCTCATCCTCCTCCTCCTC
CACCTTCCCATCTCGTCATTCAACTCCTCACCCGAATACGCCTAGCTTGG
TCCACCGCTCGAGCCGCGCATAAAGAGAAGGAAGCAGCCCAGCGCCTCGG
GCGCGCTGCCCTCGCTTTGGTACGAAGCGGGTTAAAATTAGGAGAGGTGA
ATGGTGAAGTGCTGGGGCATTTGCTTCCGTTCTGTTTTGCTTTGATGGAG
GAGTATGAAAAGGAAGAAGCACAGATTTTGGGGTATACCATTTGGTGCTT
CGCGGCAAATAAGACGACGGGGACAGAGCTTGCATGGTTCTTACCGATAC
AGATGCAGGTTTTTCAGAGGGGATTAAAGGTCTTGGTGAAACAGCCGAGT
GTGCTCCGACTGCTTTTGTTTTGTACAACGGAGCTGTTAAGGTTGACATT
GGCGGTACAGCAAGAGCAACAGCGAGAAGAGGGGGGGGGGGGAGGGGGGA
AAGGGGGGGCAGGGTGGCGTGATGTAGTCCTTGAACATTTGCTTGCAGCG
TTGGCCCGCGCGTCCCCAATTAGCTGTAGTAATGACCAGAGTATTGTGTT
TGCCTTGTTGGAAGGGATGTATCGTCTCCTGCCCCTATACAAAGACGGTT
TCTTCATCGTCCGGTACCTACGGGCATTAATCCAGGTCTTGACTTTCACG
CCCTTGGAAGAAGGAGATGATGCCGTGCGTGTGGTAGCCCTCCGCACCCT
CCTCCTCGTCCTCGGGCAATGCCAAGTTGTGATCCATCAACATGCGCTCG
AGACGCTTGCGCAAGTGCTGCGACTGTATATCCTCTTGTTTCGACAAGGA
AATAATCAGACGGAGGGGGACAAGGCAAGCATGGCGTTATGTCGGGAGGT
GGCGGGAATGCTAAGGGTGGGGTGTAAGGGGCAGGCACGACAAGGGCTCG
AGGCCTTTGTCCAGGGACTGAGAGAGGAAGGGGGCTACTGCTTGGAGCTA
AGCGGGATCTGGCCAACTGAAAGTAGAAGTGGAATCGTGAAGGAATTCCC
CGAGAATAAAAAAGATAAATGA
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Synonyms
Publications