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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1066256..1068837 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03970.1 vs.
Match: EWM28803.1 (Protein kinase, ATP binding site [Nannochloropsis gaditana]) HSP 1 Score: 788.1 bits (2034), Expect = 2.100e-224 Identity = 440/650 (67.69%), Postives = 499/650 (76.77%), Query Frame = 0
Query: 1 MSHWGSCLARLRECVRHLILDEVEEESMRLFENEDKLEMPTSCRRQQQQHYHHRNGDGPSGAGNGHSSASTLSSTSPSSTTARPAHTKVLRAKDNSYSEGILQDFRREEIPTELAQFYDLKDIIGIGTTSKVYRCKRRARQTVYACKVIDKRKLNMEVDNKDLLLEQLRKEIEILQHLHHPNIVEFEDVIETADKIFVIMELVQGGELFEYLLDRGPLQEDVALHVFRQVMGAITYMHDRGVVHRDLKAENLLVVDSTAEYPTVKLIDFGFSTILRHQLTGSFLGTGGYLAPEIRQHRMYSESVDIWACGVLLYLLLSCRLPFNADVEVLPSNRAQVARKFELSFPEAVWRGKSESVKDLLRRMLVTNPLERFSAHQVIKHPWTLYGTAADAKRNKNNKARKEGGNVKGGKPPPFQAKP----------KSARGEFLENPQESSGYVSKTKS--------GSRDGDRTP-ISGNGTGLLRSSMAGQHHVQQPYQQQVPGAGNGTHALQSSSSSP-YSSSPSS--PSPSMSMAAAMVINQDGNIRHVRSHLNLDRMRLPVNTAYSRTPPTTKASPLRHSTTLQNGDGNGRSRESRIGGHQKPVLVSYFPQTLHNTVAGDLSSTSNLSLKFAMNNAKAPPMNYQRTPPGAMP 629
MS WG CL RLR+C+R L+L+E +EE++ L EN DKLE+ S R +Q HRNGDGPSGAG+G+S+ ST SS + RPAHTKVLRAKD SYSEGILQDFRREEIP ELA+FYD++DIIGIGTTSKVYRCKRRARQTV+ACKVIDKRKLN+E+DNKD+LLEQLRKEIEILQHL HPNIV FEDVIETADKIFV+MEL+QGGELFE+LLDRGPL EDVALHVFRQVMGAITYMHDRGVVHRDLKAENLL+VD AEYPTVKLIDFGFSTILRH LTGSFLGTGGYLAPEIRQ RMYSESVDIWA GVLLYLLLSCRLPFNADVEVLPSNRAQVARKFELSFPEAVW+GKS+SVKDLLRRML+T+PL+RFSAHQVI+HPWTLYG AADA+ K + + + + K PP K + +G ENPQESSGYVSKT S RD RTP + TG ++ V+Q Q G + AL S S++P Y SSPSS SPS SMAAA+V+N DGNIRHVRS NLDR+ SRTPPT K SPLR + T+ G G +++ R G QKPVLVSYFPQTLHN+ AGDLS+TSNLSLKF+M + K M+ +R P +P
Sbjct: 1 MSQWGGCLRRLRDCLRRLLLEEEDEEAVGLMEN-DKLELAVSRGRHKQ----HRNGDGPSGAGSGNSATSTTSSKT------RPAHTKVLRAKDASYSEGILQDFRREEIPAELAKFYDMQDIIGIGTTSKVYRCKRRARQTVFACKVIDKRKLNIEIDNKDMLLEQLRKEIEILQHLQHPNIVRFEDVIETADKIFVVMELIQGGELFEFLLDRGPLAEDVALHVFRQVMGAITYMHDRGVVHRDLKAENLLLVDPAAEYPTVKLIDFGFSTILRHTLTGSFLGTGGYLAPEIRQQRMYSESVDIWAAGVLLYLLLSCRLPFNADVEVLPSNRAQVARKFELSFPEAVWKGKSDSVKDLLRRMLLTDPLKRFSAHQVIRHPWTLYGAAADARGPKGVREKAQKDSEKANTIPPLPTKAAASSRNALGGRGGQGASFENPQESSGYVSKTSSTQASTISGRGRDPARTPGPLTDKTGPSLVALPPGAPVRQSRQLPPSGKESRFQALSSPSTTPTYGSSPSSTTSSPSSSMAAALVLNADGNIRHVRSSANLDRLPTSGAATLSRTPPTVKPSPLRPAITVGGGSQAGHAKQ-RGNGPQKPVLVSYFPQTLHNSAAGDLSTTSNLSLKFSMQDKKPRAMDGERRVPEGIP 638
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03970.1 ID=NO04G03970.1|Name=NO04G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp ATGTCGCATTGGGGTTCGTGCCTTGCGCGGCTCCGGGAATGTGTGCGCCA TCTGATTCTTGACGAGGTGGAGGAAGAATCCATGAGGCTGTTTGAGAACG AGGACAAGCTCGAAATGCCTACCTCCTGTCGCCGCCAGCAGCAGCAGCAC TACCACCACCGCAACGGCGACGGGCCTTCAGGGGCCGGGAATGGCCATTC CTCCGCCTCCACCTTGTCTTCCACCTCTCCTTCGTCCACCACCGCCCGCC CCGCTCATACCAAGGTGCTTAGGGCGAAGGATAATTCGTATAGTGAGGGA ATTTTGCAGGATTTCCGACGGGAGGAGATTCCCACGGAGCTGGCTCAGTT TTATGATTTGAAAGACATAATAGGCATTGGGACTACGAGCAAAGTCTACC GTTGCAAACGCCGGGCCCGTCAAACCGTGTATGCATGCAAGGTGATCGAC AAACGCAAGCTCAACATGGAGGTGGACAACAAGGATCTGTTGCTTGAGCA GCTGCGAAAAGAGATTGAAATTTTGCAGCATTTACATCATCCGAATATCG TCGAATTTGAAGATGTCATTGAAACGGCCGACAAGATTTTTGTTATTATG GAGCTGGTCCAAGGGGGGGAGTTGTTTGAATATTTGCTCGACCGTGGCCC ACTGCAGGAGGACGTCGCTCTGCACGTGTTTCGCCAAGTGATGGGCGCAA TCACCTACATGCACGACCGGGGTGTGGTGCACAGGGATTTGAAGGCCGAA AATTTGTTGGTGGTGGACTCAACAGCGGAGTATCCGACGGTAAAGCTAAT CGACTTCGGCTTCTCGACCATTCTGAGGCATCAGCTGACGGGGTCGTTCT TAGGGACGGGTGGATACCTGGCGCCGGAGATTCGGCAGCATAGGATGTAT TCGGAGAGCGTGGACATATGGGCGTGTGGTGTGTTGCTGTACTTGTTGTT ATCTTGTCGGCTGCCTTTCAACGCGGACGTTGAGGTCTTGCCCAGCAACA GGGCGCAGGTGGCTCGGAAGTTTGAGCTGAGTTTCCCCGAGGCGGTCTGG AGGGGTAAGAGCGAGAGTGTCAAGGATTTGTTGAGAAGGATGTTGGTCAC GAACCCGCTCGAGAGATTTAGTGCTCACCAGGTGATCAAGCACCCGTGGA CGTTGTATGGAACTGCGGCTGATGCCAAGAGGAATAAGAATAACAAGGCG CGGAAGGAAGGAGGGAACGTGAAGGGGGGGAAGCCACCGCCGTTTCAGGC CAAGCCGAAAAGTGCCAGGGGGGAGTTCTTAGAGAACCCGCAGGAGAGCA GTGGGTATGTGAGCAAAACGAAGAGCGGAAGCAGAGATGGCGACCGCACG CCTATCAGTGGCAATGGCACTGGGCTCTTGAGGAGCAGCATGGCAGGGCA GCATCACGTGCAGCAGCCGTACCAGCAACAAGTACCGGGGGCAGGCAACG GCACGCACGCCCTCCAATCTTCGTCCTCTTCCCCATACTCCTCCTCTCCA TCCTCTCCCTCCCCTTCCATGTCAATGGCTGCGGCTATGGTGATCAATCA AGATGGGAATATTCGACATGTCCGTTCTCACCTCAACCTGGATCGCATGC GCCTTCCCGTCAATACCGCCTACTCCCGCACTCCGCCCACCACCAAGGCT TCCCCCTTACGCCATTCTACCACCCTGCAGAATGGTGATGGCAACGGCCG CAGCAGAGAGTCGCGGATAGGGGGGCATCAGAAGCCTGTCTTGGTCTCTT ATTTCCCCCAGACGCTGCATAACACTGTGGCGGGTGACTTGAGTTCGACC AGCAATCTGTCCTTGAAATTTGCGATGAATAATGCGAAGGCCCCTCCGAT GAATTACCAGAGAACACCGCCTGGGGCGATGCCCCCTGTAGGCGGAGGGC TGGGCGGGCTGGTGGAGAATGGGGGAGAGAGGGTGGTGGCGGGAATTTGT GGATAG back to topprotein sequence of NO04G03970.1 >NO04G03970.1-protein ID=NO04G03970.1-protein|Name=NO04G03970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp MSHWGSCLARLRECVRHLILDEVEEESMRLFENEDKLEMPTSCRRQQQQH YHHRNGDGPSGAGNGHSSASTLSSTSPSSTTARPAHTKVLRAKDNSYSEG ILQDFRREEIPTELAQFYDLKDIIGIGTTSKVYRCKRRARQTVYACKVID KRKLNMEVDNKDLLLEQLRKEIEILQHLHHPNIVEFEDVIETADKIFVIM ELVQGGELFEYLLDRGPLQEDVALHVFRQVMGAITYMHDRGVVHRDLKAE NLLVVDSTAEYPTVKLIDFGFSTILRHQLTGSFLGTGGYLAPEIRQHRMY SESVDIWACGVLLYLLLSCRLPFNADVEVLPSNRAQVARKFELSFPEAVW RGKSESVKDLLRRMLVTNPLERFSAHQVIKHPWTLYGTAADAKRNKNNKA RKEGGNVKGGKPPPFQAKPKSARGEFLENPQESSGYVSKTKSGSRDGDRT PISGNGTGLLRSSMAGQHHVQQPYQQQVPGAGNGTHALQSSSSSPYSSSP SSPSPSMSMAAAMVINQDGNIRHVRSHLNLDRMRLPVNTAYSRTPPTTKA SPLRHSTTLQNGDGNGRSRESRIGGHQKPVLVSYFPQTLHNTVAGDLSST SNLSLKFAMNNAKAPPMNYQRTPPGAMPPVGGGLGGLVENGGERVVAGIC G* back to topmRNA from alignment at chr4:1066256..1068837+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03970.1 ID=NO04G03970.1|Name=NO04G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2582bp|location=Sequence derived from alignment at chr4:1066256..1068837+ (Nannochloropsis oceanica) ATGTCGCATTGGGGTTCGTGCCTTGCGCGGCTCCGGGAATGTGTGCGCCA
TCTGATTCTTGACGAGGTGGAGGAAGAATCCATGAGGCTGTTTGAGAACG
AGGACAAGGTGAGTGTGCTATGCTTGGCTGTCGAGGAGGATTGCATCTGG
GTTCACCAATTGACACCATAAGATTACATCTTGGATCGAACGTTCTCTGT
ATGTGTGTCCGCGCTGTGATGTCCTCCTTGTCTTTCTTTCTCTCGCTTGG
GCATGATCGAGATTCCTGTCGCTCGATTCTCTCTTCGTTTCTAAAAAAAA
GACTGGCGGATTGTTGCCTTCGCACGCATTCAGCGTGATTTCGTGTATCC
CCTTAACGATTTATTTGACATAGATTTACGTTTTCTCTACCACTCGCCAC
CCTACCCGCACACGCAGCTCGAAATGCCTACCTCCTGTCGCCGCCAGCAG
CAGCAGCACTACCACCACCGCAACGGCGACGGGCCTTCAGGGGCCGGGAA
TGGCCATTCCTCCGCCTCCACCTTGTCTTCCACCTCTCCTTCGTCCACCA
CCGCCCGCCCCGCTCATACCAAGGTGCTTAGGGCGAAGGATAATTCGTAT
AGTGAGGGAATTTTGCAGGATTTCCGACGGGAGGAGATTCCCACGGAGCT
GGCTCAGTTTTATGATTTGAAAGGTACGTTGGAAGTGAGGGATTGCTCGC
GAGAGGGAGTGCAGGGAAGAAGGAGGGAGAGAATGTGGCTCTTCTGGTCG
CGAGGTGCTGGATCGACCAATTTTCTCCCTCCCTCCCTTCCTCCATCCCC
TCCGTTCATCCTCGCAGACATAATAGGCATTGGGACTACGAGCAAAGTCT
ACCGTTGCAAACGCCGGGCCCGTCAAACCGTGTATGCATGCAAGGTGATC
GACAAACGCAAGCTCAACATGGAGGTGGACAACAAGGATCTGTTGCTTGA
GCAGCTGCGAAAAGAGATTGAAATTTTGCAGCATTTACATCATCCGAATA
TCGTCGAATTTGAAGATGTCATTGAAACGGCCGACAAGATTTTTGTTATT
ATGGAGCTGGTCCAAGGGGGGGAGTTGTTTGAATATTTGCTCGACCGTGG
CCCACTGCAGGAGGACGTCGCTCTGCACGTGTTTCGCCAAGTGATGGGCG
CAATCACCTACATGCACGACCGGGGTGTGGTGCACAGGGATTTGAAGGCC
GAAAATTTGTTGGTGGTGGACTCAACAGCGGAGTATCCGACGGTAAAGGT
AGGAAGGAAGGAAGGGAGGGAGCGAGGGAGGGAGCGAGGGAGGGAAATAG
AGTGTATGGTACGGATGCATTGATGCCATTGCTGCTTTTCTCGTGCGGCT
AGGAAAGGCTTCTTTGCACGCAGGTAAGCGTATCATTGATATTTTTCCTT
CAACTCCCAACGCTCAAACAGCTAATCGACTTCGGCTTCTCGACCATTCT
GAGGCATCAGCTGACGGGGTCGTTCTTAGGGACGGGTGGATACCTGGCGC
CGGAGATTCGGCAGCATAGGATGTATTCGGAGAGCGTGGACATATGGGCG
TGTGGTGTGTTGCTGTACTTGTTGTTATCTTGTCGGCTGCCTTTCAACGC
GGACGTTGAGGTCTTGCCCAGCAACAGGGCGCAGGTGGCTCGGAAGTTTG
AGCTGAGTTTCCCCGAGGCGGTCTGGAGGGGTAAGAGCGAGAGTGTCAAG
GATTTGTTGAGAAGGATGTTGGTCACGAACCCGCTCGAGAGATTTAGTGC
TCACCAGGTGATCAAGCACCCGTGGACGTTGTATGGAACTGCGGCTGATG
CCAAGAGGAATAAGAATAACAAGGCGCGGAAGGAAGGAGGGAACGTGAAG
GGGGGGAAGCCACCGCCGTTTCAGGCCAAGCCGAAAAGTGCCAGGGGGGA
GTTCTTAGAGAACCCGCAGGAGAGCAGTGGGTATGTGAGCAAAACGAAGA
GCGGAAGCAGAGATGGCGACCGCACGCCTATCAGTGGCAATGGCACTGGG
CTCTTGAGGAGCAGCATGGCAGGGCAGCATCACGTGCAGCAGCCGTACCA
GCAACAAGTACCGGGGGCAGGCAACGGCACGCACGCCCTCCAATCTTCGT
CCTCTTCCCCATACTCCTCCTCTCCATCCTCTCCCTCCCCTTCCATGTCA
ATGGCTGCGGCTATGGTGATCAATCAAGATGGGAATATTCGACATGTCCG
TTCTCACCTCAACCTGGATCGCATGCGCCTTCCCGTCAATACCGCCTACT
CCCGCACTCCGCCCACCACCAAGGCTTCCCCCTTACGCCATTCTACCACC
CTGCAGAATGGTGATGGCAACGGCCGCAGCAGAGAGTCGCGGATAGGGGG
GCATCAGAAGCCTGTCTTGGTCTCTTATTTCCCCCAGACGCTGCATAACA
CTGTGGCGGGTGACTTGAGTTCGACCAGCAATCTGTCCTTGAAATTTGCG
ATGAATAATGCGAAGGCCCCTCCGATGAATTACCAGAGAACACCGCCTGG
GGCGATGCCCCCTGTAGGCGGAGGGCTGGGCGGGCTGGTGGAGAATGGGG
GAGAGAGGGTGGTGGCGGGAATTTGTGGATAG back to topCoding sequence (CDS) from alignment at chr4:1066256..1068837+ >NO04G03970.1 ID=NO04G03970.1|Name=NO04G03970.1|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at chr4:1066256..1068837+ (Nannochloropsis oceanica) ATGTCGCATTGGGGTTCGTGCCTTGCGCGGCTCCGGGAATGTGTGCGCCA TCTGATTCTTGACGAGGTGGAGGAAGAATCCATGAGGCTGTTTGAGAACG AGGACAAGCTCGAAATGCCTACCTCCTGTCGCCGCCAGCAGCAGCAGCAC TACCACCACCGCAACGGCGACGGGCCTTCAGGGGCCGGGAATGGCCATTC CTCCGCCTCCACCTTGTCTTCCACCTCTCCTTCGTCCACCACCGCCCGCC CCGCTCATACCAAGGTGCTTAGGGCGAAGGATAATTCGTATAGTGAGGGA ATTTTGCAGGATTTCCGACGGGAGGAGATTCCCACGGAGCTGGCTCAGTT TTATGATTTGAAAGACATAATAGGCATTGGGACTACGAGCAAAGTCTACC GTTGCAAACGCCGGGCCCGTCAAACCGTGTATGCATGCAAGGTGATCGAC AAACGCAAGCTCAACATGGAGGTGGACAACAAGGATCTGTTGCTTGAGCA GCTGCGAAAAGAGATTGAAATTTTGCAGCATTTACATCATCCGAATATCG TCGAATTTGAAGATGTCATTGAAACGGCCGACAAGATTTTTGTTATTATG GAGCTGGTCCAAGGGGGGGAGTTGTTTGAATATTTGCTCGACCGTGGCCC ACTGCAGGAGGACGTCGCTCTGCACGTGTTTCGCCAAGTGATGGGCGCAA TCACCTACATGCACGACCGGGGTGTGGTGCACAGGGATTTGAAGGCCGAA AATTTGTTGGTGGTGGACTCAACAGCGGAGTATCCGACGGTAAAGCTAAT CGACTTCGGCTTCTCGACCATTCTGAGGCATCAGCTGACGGGGTCGTTCT TAGGGACGGGTGGATACCTGGCGCCGGAGATTCGGCAGCATAGGATGTAT TCGGAGAGCGTGGACATATGGGCGTGTGGTGTGTTGCTGTACTTGTTGTT ATCTTGTCGGCTGCCTTTCAACGCGGACGTTGAGGTCTTGCCCAGCAACA GGGCGCAGGTGGCTCGGAAGTTTGAGCTGAGTTTCCCCGAGGCGGTCTGG AGGGGTAAGAGCGAGAGTGTCAAGGATTTGTTGAGAAGGATGTTGGTCAC GAACCCGCTCGAGAGATTTAGTGCTCACCAGGTGATCAAGCACCCGTGGA CGTTGTATGGAACTGCGGCTGATGCCAAGAGGAATAAGAATAACAAGGCG CGGAAGGAAGGAGGGAACGTGAAGGGGGGGAAGCCACCGCCGTTTCAGGC CAAGCCGAAAAGTGCCAGGGGGGAGTTCTTAGAGAACCCGCAGGAGAGCA GTGGGTATGTGAGCAAAACGAAGAGCGGAAGCAGAGATGGCGACCGCACG CCTATCAGTGGCAATGGCACTGGGCTCTTGAGGAGCAGCATGGCAGGGCA GCATCACGTGCAGCAGCCGTACCAGCAACAAGTACCGGGGGCAGGCAACG GCACGCACGCCCTCCAATCTTCGTCCTCTTCCCCATACTCCTCCTCTCCA TCCTCTCCCTCCCCTTCCATGTCAATGGCTGCGGCTATGGTGATCAATCA AGATGGGAATATTCGACATGTCCGTTCTCACCTCAACCTGGATCGCATGC GCCTTCCCGTCAATACCGCCTACTCCCGCACTCCGCCCACCACCAAGGCT TCCCCCTTACGCCATTCTACCACCCTGCAGAATGGTGATGGCAACGGCCG CAGCAGAGAGTCGCGGATAGGGGGGCATCAGAAGCCTGTCTTGGTCTCTT ATTTCCCCCAGACGCTGCATAACACTGTGGCGGGTGACTTGAGTTCGACC AGCAATCTGTCCTTGAAATTTGCGATGAATAATGCGAAGGCCCCTCCGAT GAATTACCAGAGAACACCGCCTGGGGCGATGCCCCCTGTAGGCGGAGGGC TGGGCGGGCTGGTGGAGAATGGGGGAGAGAGGGTGGTGGCGGGAATTTGT GGATAG back to top
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