NO04G03790.1, NO04G03790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03790.1
Unique NameNO04G03790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1155
Alignment locationchr4:1022708..1024090 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1022708..1024090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03790.1 vs.
Match: EWM28774.1 (geranylgeranyl pyrophosphate synthase [Nannochloropsis gaditana])

HSP 1 Score: 619.0 bits (1595), Expect = 9.900e-174
Identity = 337/386 (87.31%), Postives = 355/386 (91.97%), Query Frame = 0 
Query:    1 MVGFTTSTCLVLSLAALSSTPTAAFQPLLR--SSNPSTSSSPVSSSCCSSSRHHPRGWLMAAAATTADAQSTSRTSSPSAASSSISSPPTLDLNKYLTEKKGAVELALDLSLQATCPEVAKITESMRYSLLAGGKRIRPIMCLAACEMAGGTAEDAMAAAVALEMIHTMSLIHDDLPSMDNDSLRRGKPTNHVIYGEDVAILAGDALLSTAFEHVAKHTPAHIPAERVVSVIARLAASVGATGLAGGQVMDLECEGKQGVGLQELTWIHTHKTAALLKVSVAAGAILGGASPEEVEACETYALDIGLAFQVADDILDVTASTEALGKTAGKDLNMDKTTYPKLLGLEGSREEARRLVKEAKAALARFGGRAGPLLAIADYIVEREN 385
            MVGFTTSTCLVLSLAALS T T AFQP  R  +S+  + +  VS  C +++R HPRGW+MAAAATTADA STSRTSSPSAA+S+ SS P  DLNKYL +KK AVE ALD SLQ T P+VAKITESMRYSLLAGGKRIRPIMC+AACEMAGGTAEDAMAAAVALEMIHTMSLIHDDLPSMDNDSLRRGKPTNHVIYGEDVAILAGDALLSTAFEHVAKHTP+H+PAERVVSVIARLAASVGATGLAGGQVMDLECEGK+GVGL+ELTWIHTHKTAALLKVSVAAGAILGGAS EEVEACETYALDIGLAFQVADDILDVTASTEALGKTAGKDLNMDKTTYPKLLGLEGSREEARRLV EAKAAL RFGGRA PLLAIADYIVER+N
Sbjct:    1 MVGFTTSTCLVLSLAALSGTRTTAFQPAARPPASSCHSGTPSVSGPCSTNTRRHPRGWVMAAAATTADAHSTSRTSSPSAAASA-SSLPAFDLNKYLLDKKDAVESALDASLQVTSPQVAKITESMRYSLLAGGKRIRPIMCIAACEMAGGTAEDAMAAAVALEMIHTMSLIHDDLPSMDNDSLRRGKPTNHVIYGEDVAILAGDALLSTAFEHVAKHTPSHVPAERVVSVIARLAASVGATGLAGGQVMDLECEGKEGVGLEELTWIHTHKTAALLKVSVAAGAILGGASAEEVEACETYALDIGLAFQVADDILDVTASTEALGKTAGKDLNMDKTTYPKLLGLEGSREEARRLVGEAKAALGRFGGRAAPLLAIADYIVERKN 385
The following BLAST results are available for this feature:
BLAST of NO04G03790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28774.19.900e-17487.31geranylgeranyl pyrophosphate synthase [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03790NO04G03790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03790.1NO04G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03790.1.cds1NO04G03790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03790.1.cds2NO04G03790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03790.1 ID=NO04G03790.1|Name=NO04G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
ATGGTGGGCTTCACGACGTCCACTTGCTTGGTGCTCTCACTCGCCGCCTT
GAGCAGCACTCCCACTGCAGCCTTTCAGCCCCTCTTAAGATCAAGTAACC
CCTCCACCTCCTCCTCCCCCGTCTCTTCCTCCTGCTGTAGCAGCTCCAGG
CATCATCCCCGAGGCTGGCTCATGGCCGCCGCCGCAACCACTGCCGACGC
CCAAAGCACCAGCAGGACTTCCTCCCCTTCCGCTGCCTCCTCCTCCATCA
GCAGTCCACCTACCTTAGACCTAAATAAATATTTGACGGAGAAGAAGGGA
GCGGTGGAACTTGCGCTTGATTTGTCTTTGCAGGCGACTTGTCCTGAAGT
AGCCAAGATAACTGAGTCCATGCGCTATTCCCTCCTCGCCGGGGGTAAGA
GGATACGACCAATCATGTGCCTTGCTGCCTGCGAAATGGCGGGCGGCACT
GCCGAAGACGCCATGGCCGCAGCGGTGGCATTGGAAATGATCCACACGAT
GTCATTAATTCATGACGATTTGCCGAGCATGGATAATGACTCCCTCCGAC
GGGGCAAGCCAACAAACCATGTTATATACGGAGAGGACGTGGCAATCCTG
GCAGGTGACGCCTTGCTGTCCACGGCGTTTGAGCACGTAGCGAAGCACAC
CCCTGCACACATCCCGGCCGAGAGGGTGGTGAGCGTCATTGCGCGTCTGG
CAGCCTCGGTGGGTGCCACGGGTCTGGCGGGCGGTCAGGTGATGGACCTG
GAATGCGAGGGGAAGCAAGGAGTGGGCCTGCAAGAGCTCACGTGGATTCA
CACTCACAAAACGGCGGCGTTGCTTAAAGTGAGCGTGGCAGCAGGAGCGA
TTTTGGGGGGGGCGTCGCCTGAGGAGGTGGAGGCATGTGAGACGTATGCG
CTCGACATTGGGTTGGCGTTTCAGGTGGCTGACGACATTTTGGACGTAAC
AGCCTCAACTGAGGCGTTGGGGAAAACTGCGGGGAAGGATTTAAATATGG
ATAAGACGACTTACCCGAAGTTGTTGGGCTTGGAGGGGAGTAGGGAGGAG
GCCCGGCGACTTGTCAAGGAGGCAAAGGCGGCTTTGGCGCGATTTGGTGG
ACGGGCGGGACCTTTGCTGGCCATCGCGGATTACATTGTGGAGAGGGAAA
ATTAA
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protein sequence of NO04G03790.1

>NO04G03790.1-protein ID=NO04G03790.1-protein|Name=NO04G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MVGFTTSTCLVLSLAALSSTPTAAFQPLLRSSNPSTSSSPVSSSCCSSSR
HHPRGWLMAAAATTADAQSTSRTSSPSAASSSISSPPTLDLNKYLTEKKG
AVELALDLSLQATCPEVAKITESMRYSLLAGGKRIRPIMCLAACEMAGGT
AEDAMAAAVALEMIHTMSLIHDDLPSMDNDSLRRGKPTNHVIYGEDVAIL
AGDALLSTAFEHVAKHTPAHIPAERVVSVIARLAASVGATGLAGGQVMDL
ECEGKQGVGLQELTWIHTHKTAALLKVSVAAGAILGGASPEEVEACETYA
LDIGLAFQVADDILDVTASTEALGKTAGKDLNMDKTTYPKLLGLEGSREE
ARRLVKEAKAALARFGGRAGPLLAIADYIVEREN*
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mRNA from alignment at chr4:1022708..1024090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03790.1 ID=NO04G03790.1|Name=NO04G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp|location=Sequence derived from alignment at chr4:1022708..1024090- (Nannochloropsis oceanica)
ATGGTGGGCTTCACGACGTCCACTTGCTTGGTGCTCTCACTCGCCGCCTT
GAGCAGCACTCCCACTGCAGGTAAGTTAGCACGCGTCGAGTCCGATGGGT
TTATCTAGCCACATCCCCGCCTCCGTTTCTTTCGTCTATCTACCCTCCGA
CTCCGAGAGTCCGTAAGCGCACATACAGTCTTCTCTGTCAAATCACTATG
CATTCTCTCTCTTGACTTTGTCTGGCTCGTCATTACAATCACTCCTACCC
TTTTAATTTTTCACTCTCATCTCGCCCACCACTCAACCCCATACACAGCC
TTTCAGCCCCTCTTAAGATCAAGTAACCCCTCCACCTCCTCCTCCCCCGT
CTCTTCCTCCTGCTGTAGCAGCTCCAGGCATCATCCCCGAGGCTGGCTCA
TGGCCGCCGCCGCAACCACTGCCGACGCCCAAAGCACCAGCAGGACTTCC
TCCCCTTCCGCTGCCTCCTCCTCCATCAGCAGTCCACCTACCTTAGACCT
AAATAAATATTTGACGGAGAAGAAGGGAGCGGTGGAACTTGCGCTTGATT
TGTCTTTGCAGGCGACTTGTCCTGAAGTAGCCAAGATAACTGAGTCCATG
CGCTATTCCCTCCTCGCCGGGGGTAAGAGGATACGACCAATCATGTGCCT
TGCTGCCTGCGAAATGGCGGGCGGCACTGCCGAAGACGCCATGGCCGCAG
CGGTGGCATTGGAAATGATCCACACGATGTCATTAATTCATGACGATTTG
CCGAGCATGGATAATGACTCCCTCCGACGGGGCAAGCCAACAAACCATGT
TATATACGGAGAGGACGTGGCAATCCTGGCAGGTGACGCCTTGCTGTCCA
CGGCGTTTGAGCACGTAGCGAAGCACACCCCTGCACACATCCCGGCCGAG
AGGGTGGTGAGCGTCATTGCGCGTCTGGCAGCCTCGGTGGGTGCCACGGG
TCTGGCGGGCGGTCAGGTGATGGACCTGGAATGCGAGGGGAAGCAAGGAG
TGGGCCTGCAAGAGCTCACGTGGATTCACACTCACAAAACGGCGGCGTTG
CTTAAAGTGAGCGTGGCAGCAGGAGCGATTTTGGGGGGGGCGTCGCCTGA
GGAGGTGGAGGCATGTGAGACGTATGCGCTCGACATTGGGTTGGCGTTTC
AGGTGGCTGACGACATTTTGGACGTAACAGCCTCAACTGAGGCGTTGGGG
AAAACTGCGGGGAAGGATTTAAATATGGATAAGACGACTTACCCGAAGTT
GTTGGGCTTGGAGGGGAGTAGGGAGGAGGCCCGGCGACTTGTCAAGGAGG
CAAAGGCGGCTTTGGCGCGATTTGGTGGACGGGCGGGACCTTTGCTGGCC
ATCGCGGATTACATTGTGGAGAGGGAAAATTAA
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Coding sequence (CDS) from alignment at chr4:1022708..1024090-

>NO04G03790.1 ID=NO04G03790.1|Name=NO04G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr4:1022708..1024090- (Nannochloropsis oceanica)
ATGGTGGGCTTCACGACGTCCACTTGCTTGGTGCTCTCACTCGCCGCCTT
GAGCAGCACTCCCACTGCAGCCTTTCAGCCCCTCTTAAGATCAAGTAACC
CCTCCACCTCCTCCTCCCCCGTCTCTTCCTCCTGCTGTAGCAGCTCCAGG
CATCATCCCCGAGGCTGGCTCATGGCCGCCGCCGCAACCACTGCCGACGC
CCAAAGCACCAGCAGGACTTCCTCCCCTTCCGCTGCCTCCTCCTCCATCA
GCAGTCCACCTACCTTAGACCTAAATAAATATTTGACGGAGAAGAAGGGA
GCGGTGGAACTTGCGCTTGATTTGTCTTTGCAGGCGACTTGTCCTGAAGT
AGCCAAGATAACTGAGTCCATGCGCTATTCCCTCCTCGCCGGGGGTAAGA
GGATACGACCAATCATGTGCCTTGCTGCCTGCGAAATGGCGGGCGGCACT
GCCGAAGACGCCATGGCCGCAGCGGTGGCATTGGAAATGATCCACACGAT
GTCATTAATTCATGACGATTTGCCGAGCATGGATAATGACTCCCTCCGAC
GGGGCAAGCCAACAAACCATGTTATATACGGAGAGGACGTGGCAATCCTG
GCAGGTGACGCCTTGCTGTCCACGGCGTTTGAGCACGTAGCGAAGCACAC
CCCTGCACACATCCCGGCCGAGAGGGTGGTGAGCGTCATTGCGCGTCTGG
CAGCCTCGGTGGGTGCCACGGGTCTGGCGGGCGGTCAGGTGATGGACCTG
GAATGCGAGGGGAAGCAAGGAGTGGGCCTGCAAGAGCTCACGTGGATTCA
CACTCACAAAACGGCGGCGTTGCTTAAAGTGAGCGTGGCAGCAGGAGCGA
TTTTGGGGGGGGCGTCGCCTGAGGAGGTGGAGGCATGTGAGACGTATGCG
CTCGACATTGGGTTGGCGTTTCAGGTGGCTGACGACATTTTGGACGTAAC
AGCCTCAACTGAGGCGTTGGGGAAAACTGCGGGGAAGGATTTAAATATGG
ATAAGACGACTTACCCGAAGTTGTTGGGCTTGGAGGGGAGTAGGGAGGAG
GCCCGGCGACTTGTCAAGGAGGCAAAGGCGGCTTTGGCGCGATTTGGTGG
ACGGGCGGGACCTTTGCTGGCCATCGCGGATTACATTGTGGAGAGGGAAA
ATTAA
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Synonyms
Publications