NO04G03760.1, NO04G03760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03760.1
Unique NameNO04G03760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1506
Alignment locationchr4:1015050..1016719 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1015050..1016719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03760.1 vs.
Match: EWM28686.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 578.6 bits (1490), Expect = 1.900e-161
Identity = 296/464 (63.79%), Postives = 353/464 (76.08%), Query Frame = 0 
Query:   59 SCGPAPL----LSTLPNLGILRSPSSCSTSSTSSSMSSAISVASSISDEDEVRPHDDLEDEEAAGHRKDHREEKYKYHLKVLNFNVFAGSPVPVLFNSLLPKTESLDGSERLKLQVERIKAMGPDIICLQEACSDGVERHYREALADLYGSFNDTQAPEPLGKVLLFFIYLLLSSFLAFCFHCVLDMWDS---------------FSFPS-----SPLRAKSIQHSDFTHLLLALVLMCKAYIIVSWSMSKCCLIGFLKGKVKASTVILWRKDRFAVVYEKDAVTRELVPVEMSTTFFQEQRGDWLNLVRPRGYLTARLLFHGMPLYVVNTHLNLGEQGYRQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLKDALAEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDLVLEP 499
            SC PAP     LST+ +L  LR   +CST +T S MSS +S+ S  SD+D  +  +D ++E A G+     + K+K+ LKVLNFNVFAGSP+P+ F S+ PKT SL+GSERLKLQVERI+A+GPDIICLQEACSDGVER+YREA ADLY SF +   PE LGK+ L F+YL++++ LAFCFHCVLD+W S               F+ PS      P         D T LLL L L+ K   +  WSM K CL+GFL+G+VKASTVILWR+DRF+VVY KD VT+ LVP EM TTFFQEQRGDWLNLVRPRGYLTA+LLFHGMPLY+VNTHLNLG+Q +R+RQVEELT+HC+ L + GSVV+CGDFNVTP+SEE+QLL ++AG+KDAL EKGC EPTWSSRNPLTHGVL E DHRCDFIFY+GL     HRMVNRRCRL +PFWGNTWLSDHFGIVLD++LEP
Sbjct:   60 SCPPAPSASAPLSTVNHLETLRGRGNCSTCTTCSVMSSDLSINSMASDDDGAQDEED-DEELAGGNGGTEEDAKHKFRLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFFEEHPPETLGKLTLGFVYLVMATVLAFCFHCVLDLWASSLTLIIPFGPSVSSTFALPSLFSSFKPHHWSRDDPYDSTRLLLVLALVGKGLGVAVWSMRKTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGL--ARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEP 520
The following BLAST results are available for this feature:
BLAST of NO04G03760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28686.11.900e-16163.79Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03760NO04G03760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03760.1NO04G03760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03760.1.cds1NO04G03760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03760.1.cds2NO04G03760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03760.1 ID=NO04G03760.1|Name=NO04G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
ATGCCCGCCGCAAGCACCCCGAGCTTTCACCCCATGTCCGCCACCGTCCC
TGCACCTACCAGAAACGCCAAAAAGAATGTCGCCGCCAGCATATCCACAT
GCGGTGATGCCTCTTCGCCGTGTCTTTGCACGCCGACCTTCCTCTTCACA
GCGAATGACGGGGATTCCCCGGTGTCGTGCGGTCCTGCCCCCCTTTTGAG
CACCCTCCCAAACCTCGGCATCTTGCGAAGTCCTAGTTCCTGCAGCACAA
GCAGCACAAGCAGCAGCATGAGCAGTGCCATAAGCGTGGCTAGCAGCATC
AGCGACGAGGACGAGGTCAGGCCTCATGACGACCTTGAGGATGAGGAGGC
AGCAGGGCACAGGAAAGACCACCGAGAAGAAAAGTACAAGTATCACCTCA
AGGTCCTGAATTTCAATGTATTTGCAGGGTCTCCTGTGCCAGTTTTGTTT
AATAGCCTCCTGCCCAAAACGGAGTCGTTGGATGGGTCAGAGAGACTGAA
GCTGCAGGTTGAGCGAATCAAGGCCATGGGCCCTGATATCATTTGCTTGC
AAGAAGCCTGCTCGGACGGGGTAGAAAGGCATTACCGTGAAGCACTTGCT
GATTTGTACGGTAGCTTTAATGACACACAAGCACCCGAGCCTCTGGGGAA
GGTCCTGCTCTTCTTCATCTACCTCCTCCTCTCCTCCTTCCTCGCCTTCT
GCTTCCATTGCGTTTTGGACATGTGGGACTCTTTCTCGTTCCCCTCCTCT
CCTCTACGGGCTAAAAGCATCCAGCACTCTGACTTCACCCATCTCTTGCT
CGCATTAGTATTGATGTGCAAGGCATACATAATTGTCTCGTGGTCTATGA
GCAAGTGTTGCCTCATCGGTTTCTTGAAGGGAAAAGTCAAGGCCTCTACT
GTCATTTTATGGAGGAAAGATCGTTTTGCCGTCGTGTATGAGAAAGACGC
AGTGACAAGAGAGCTGGTACCCGTCGAGATGTCCACGACCTTTTTCCAGG
AACAGAGAGGGGATTGGTTGAACCTTGTGAGGCCGAGGGGATACTTGACT
GCACGGTTGCTCTTTCACGGCATGCCGTTGTATGTTGTGAATACGCATTT
AAATTTGGGAGAACAAGGCTATAGACAACGGCAGGTGGAGGAGCTGACGA
GGCATTGTCAGGTACTTGGGGAGGAAGGATCAGTTGTGGTGTGTGGTGAC
TTTAACGTGACTCCTGACAGTGAGGAAGTGCAGTTACTGTGTCGCAGGGC
AGGGTTAAAGGACGCGTTGGCCGAGAAGGGCTGCGTGGAACCAACGTGGT
CGAGTCGGAATCCCTTGACGCATGGGGTTCTGCGTGAGTGTGATCATAGG
TGCGATTTTATTTTTTATCGAGGGTTGTTAGGGACAGGAGGGCATAGGAT
GGTAAATCGACGGTGTCGATTAGCTTTGCCATTTTGGGGTAATACGTGGT
TGAGCGATCATTTCGGGATTGTCCTTGATCTTGTGTTGGAGCCTTCGATG
ACTTAA
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protein sequence of NO04G03760.1

>NO04G03760.1-protein ID=NO04G03760.1-protein|Name=NO04G03760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MPAASTPSFHPMSATVPAPTRNAKKNVAASISTCGDASSPCLCTPTFLFT
ANDGDSPVSCGPAPLLSTLPNLGILRSPSSCSTSSTSSSMSSAISVASSI
SDEDEVRPHDDLEDEEAAGHRKDHREEKYKYHLKVLNFNVFAGSPVPVLF
NSLLPKTESLDGSERLKLQVERIKAMGPDIICLQEACSDGVERHYREALA
DLYGSFNDTQAPEPLGKVLLFFIYLLLSSFLAFCFHCVLDMWDSFSFPSS
PLRAKSIQHSDFTHLLLALVLMCKAYIIVSWSMSKCCLIGFLKGKVKAST
VILWRKDRFAVVYEKDAVTRELVPVEMSTTFFQEQRGDWLNLVRPRGYLT
ARLLFHGMPLYVVNTHLNLGEQGYRQRQVEELTRHCQVLGEEGSVVVCGD
FNVTPDSEEVQLLCRRAGLKDALAEKGCVEPTWSSRNPLTHGVLRECDHR
CDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDLVLEPSM
T*
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mRNA from alignment at chr4:1015050..1016719+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03760.1 ID=NO04G03760.1|Name=NO04G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1670bp|location=Sequence derived from alignment at chr4:1015050..1016719+ (Nannochloropsis oceanica)
ATGCCCGCCGCAAGCACCCCGAGCTTTCACCCCATGTCCGCCACCGTCCC
TGCACCTACCAGAAACGCCAAAAAGAATGTCGCCGCCAGCATATCCACAT
GCGGTGATGCCTCTTCGCCGTGTCTTTGCACGCCGACCTTCCTCTTCACA
GCGAATGACGGGGATTCCCCGGTGTCGTGCGGTCCTGCCCCCCTTTTGAG
CACCCTCCCAAACCTCGGCATCTTGCGAAGTCCTAGTTCCTGCAGCACAA
GCAGCACAAGCAGCAGCATGAGCAGTGCCATAAGCGTGGCTAGCAGCATC
AGCGACGAGGACGAGGTCAGGCCTCATGACGACCTTGAGGATGAGGAGGC
AGCAGGGCACAGGAAAGACCACCGAGAAGAAAAGTACAAGTATCACCTCA
AGGTCCTGAATTTCAATGTATTTGCAGGGTCTCCTGTGCCAGTTTTGTTT
AATAGCCTCCTGCCCAAAACGGAGTCGTTGGATGGGTCAGAGAGACTGAA
GCTGCAGGTTGAGCGAATCAAGGCCATGGGCCCTGATATCATTTGCTTGC
AAGAAGCCTGCTCGGACGGGGTAGAAAGGTACGAGTCATTGATTATGGAG
AGCCATCAACGTTCACGGGGCGTATATAGATTTCCCAGGGCTGTAATACC
TACGTGCCCTCTCTCACAACCCTTCGGATCACATTTATTCATCTTTTCAC
TCATCTTCCGCTCTCCCCCCCTCCCCCCGCATGCGTTCTCAGGCATTACC
GTGAAGCACTTGCTGATTTGTACGGTAGCTTTAATGACACACAAGCACCC
GAGCCTCTGGGGAAGGTCCTGCTCTTCTTCATCTACCTCCTCCTCTCCTC
CTTCCTCGCCTTCTGCTTCCATTGCGTTTTGGACATGTGGGACTCTTTCT
CGTTCCCCTCCTCTCCTCTACGGGCTAAAAGCATCCAGCACTCTGACTTC
ACCCATCTCTTGCTCGCATTAGTATTGATGTGCAAGGCATACATAATTGT
CTCGTGGTCTATGAGCAAGTGTTGCCTCATCGGTTTCTTGAAGGGAAAAG
TCAAGGCCTCTACTGTCATTTTATGGAGGAAAGATCGTTTTGCCGTCGTG
TATGAGAAAGACGCAGTGACAAGAGAGCTGGTACCCGTCGAGATGTCCAC
GACCTTTTTCCAGGAACAGAGAGGGGATTGGTTGAACCTTGTGAGGCCGA
GGGGATACTTGACTGCACGGTTGCTCTTTCACGGCATGCCGTTGTATGTT
GTGAATACGCATTTAAATTTGGGAGAACAAGGCTATAGACAACGGCAGGT
GGAGGAGCTGACGAGGCATTGTCAGGTACTTGGGGAGGAAGGATCAGTTG
TGGTGTGTGGTGACTTTAACGTGACTCCTGACAGTGAGGAAGTGCAGTTA
CTGTGTCGCAGGGCAGGGTTAAAGGACGCGTTGGCCGAGAAGGGCTGCGT
GGAACCAACGTGGTCGAGTCGGAATCCCTTGACGCATGGGGTTCTGCGTG
AGTGTGATCATAGGTGCGATTTTATTTTTTATCGAGGGTTGTTAGGGACA
GGAGGGCATAGGATGGTAAATCGACGGTGTCGATTAGCTTTGCCATTTTG
GGGTAATACGTGGTTGAGCGATCATTTCGGGATTGTCCTTGATCTTGTGT
TGGAGCCTTCGATGACTTAA
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Coding sequence (CDS) from alignment at chr4:1015050..1016719+

>NO04G03760.1 ID=NO04G03760.1|Name=NO04G03760.1|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at chr4:1015050..1016719+ (Nannochloropsis oceanica)
ATGCCCGCCGCAAGCACCCCGAGCTTTCACCCCATGTCCGCCACCGTCCC
TGCACCTACCAGAAACGCCAAAAAGAATGTCGCCGCCAGCATATCCACAT
GCGGTGATGCCTCTTCGCCGTGTCTTTGCACGCCGACCTTCCTCTTCACA
GCGAATGACGGGGATTCCCCGGTGTCGTGCGGTCCTGCCCCCCTTTTGAG
CACCCTCCCAAACCTCGGCATCTTGCGAAGTCCTAGTTCCTGCAGCACAA
GCAGCACAAGCAGCAGCATGAGCAGTGCCATAAGCGTGGCTAGCAGCATC
AGCGACGAGGACGAGGTCAGGCCTCATGACGACCTTGAGGATGAGGAGGC
AGCAGGGCACAGGAAAGACCACCGAGAAGAAAAGTACAAGTATCACCTCA
AGGTCCTGAATTTCAATGTATTTGCAGGGTCTCCTGTGCCAGTTTTGTTT
AATAGCCTCCTGCCCAAAACGGAGTCGTTGGATGGGTCAGAGAGACTGAA
GCTGCAGGTTGAGCGAATCAAGGCCATGGGCCCTGATATCATTTGCTTGC
AAGAAGCCTGCTCGGACGGGGTAGAAAGGCATTACCGTGAAGCACTTGCT
GATTTGTACGGTAGCTTTAATGACACACAAGCACCCGAGCCTCTGGGGAA
GGTCCTGCTCTTCTTCATCTACCTCCTCCTCTCCTCCTTCCTCGCCTTCT
GCTTCCATTGCGTTTTGGACATGTGGGACTCTTTCTCGTTCCCCTCCTCT
CCTCTACGGGCTAAAAGCATCCAGCACTCTGACTTCACCCATCTCTTGCT
CGCATTAGTATTGATGTGCAAGGCATACATAATTGTCTCGTGGTCTATGA
GCAAGTGTTGCCTCATCGGTTTCTTGAAGGGAAAAGTCAAGGCCTCTACT
GTCATTTTATGGAGGAAAGATCGTTTTGCCGTCGTGTATGAGAAAGACGC
AGTGACAAGAGAGCTGGTACCCGTCGAGATGTCCACGACCTTTTTCCAGG
AACAGAGAGGGGATTGGTTGAACCTTGTGAGGCCGAGGGGATACTTGACT
GCACGGTTGCTCTTTCACGGCATGCCGTTGTATGTTGTGAATACGCATTT
AAATTTGGGAGAACAAGGCTATAGACAACGGCAGGTGGAGGAGCTGACGA
GGCATTGTCAGGTACTTGGGGAGGAAGGATCAGTTGTGGTGTGTGGTGAC
TTTAACGTGACTCCTGACAGTGAGGAAGTGCAGTTACTGTGTCGCAGGGC
AGGGTTAAAGGACGCGTTGGCCGAGAAGGGCTGCGTGGAACCAACGTGGT
CGAGTCGGAATCCCTTGACGCATGGGGTTCTGCGTGAGTGTGATCATAGG
TGCGATTTTATTTTTTATCGAGGGTTGTTAGGGACAGGAGGGCATAGGAT
GGTAAATCGACGGTGTCGATTAGCTTTGCCATTTTGGGGTAATACGTGGT
TGAGCGATCATTTCGGGATTGTCCTTGATCTTGTGTTGGAGCCTTCGATG
ACTTAA
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Synonyms
Publications