NO04G03650.1, NO04G03650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03650.1
Unique NameNO04G03650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1272
Alignment locationchr4:989095..991004 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:989095..991004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03650.1 vs.
Match: EWM28717.1 (polyketide cyclase/dehydrase [Nannochloropsis gaditana])

HSP 1 Score: 407.1 bits (1045), Expect = 6.500e-110
Identity = 207/343 (60.35%), Postives = 261/343 (76.09%), Query Frame = 0 
Query:   59 LLQPLPGQAASPKFSHPHNGVLEKYELKVPKISLDSDALSKLEKGQPVKKQIQSAGKSGGRGIVIQDVHAPPAMVMDRILDFGNYNKMVPNVAQCGNYATRKLRNGDLELKTRYVLSILGFKLEYFVRHIYRPSIHSLVWTLDYDRASDLDDTAGYWSVVPLKKKGGKDEGEWSRVFYSIDLRIPAWIPQFVVNILNTQALTSATAWVKTQSEKKFQAS-LSRKTVAPAAAPVVMMGTAD-GGNSRRGEEKKKTRKFGGGDLWEGFIDEFSDIIDTEMYAQKVRAREEKRKDEEAGKEKKVKRRKKGKEGVKVEMSGPGHDDARNVLVFLWVSILTYGLIQLW 400
            ++ P PG+AA+PK  H H G+LEKYELKVP+++LD  A+ +LE+G PVKKQIQ+AG++GGRGIV+QDVHAP ++VM RILDF NYNKMVPNVAQCGNYA RKL +GD+EL+TRYVLSI+GFKLEYFVRH+YRPSI +L WTLDYDR SDL+DTAGYWSVVPL K+G  +  +WSRVFYS+DLRIPAW+PQ VVNILNTQALT+ATAWVKTQSE+ +Q +  S K   P A      G++       +   + ++  +GGGDLWE F+ EFSDIIDT  YA +V+ R +KR++       K  RRKKG+       +G G +D+RN+L  LW++IL Y + QLW
Sbjct:   17 IVHPFPGEAANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEG--NARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTSGKRRRPDARASGRTGSSSLADEIAKSAAESRSNIYGGGDLWEEFVQEFSDIIDTAKYASQVKERMQKREE-----RAKSARRKKGE-----TEAGAGPNDSRNILRVLWMTILFYSITQLW 347
The following BLAST results are available for this feature:
BLAST of NO04G03650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28717.16.500e-11060.35polyketide cyclase/dehydrase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03650NO04G03650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03650.1NO04G03650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03650.1.cds1NO04G03650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03650.1.cds2NO04G03650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03650.1.cds3NO04G03650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03650.1.cds4NO04G03650.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03650.1 ID=NO04G03650.1|Name=NO04G03650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
ATGGAGCTGCTGGAGGAGGAGGATGCCGAGGTGATGATGGGGACGTTCCT
CGTCTTGGCTTCGGCACAAACTCGTGCTCTTGAGACACAGTTCAAAGCAA
CACCTCCACAAGTCCACCACAAAGAGGGCATTGGTAACAAAAATGCGACT
ACTCAATTTTCCCCTTTCAGCCACCTTCTGCAGCCGCTCCCTGGCCAAGC
GGCCAGCCCCAAATTTTCGCATCCCCACAATGGCGTACTGGAGAAATACG
AGCTTAAGGTTCCCAAGATCAGCCTTGACAGCGACGCCTTGTCCAAGCTC
GAAAAGGGTCAGCCGGTAAAGAAGCAGATTCAGTCAGCGGGCAAATCTGG
GGGAAGGGGCATTGTCATCCAGGATGTGCATGCCCCACCCGCCATGGTGA
TGGACCGCATTTTGGATTTTGGCAATTACAACAAAATGGTGCCAAATGTT
GCGCAGTGCGGTAACTATGCTACGCGGAAATTGAGGAATGGTGACTTGGA
GCTGAAAACACGCTATGTCCTCTCGATCCTTGGCTTTAAACTCGAATACT
TCGTTCGACACATCTACCGCCCCTCCATCCACTCGCTCGTTTGGACGCTC
GACTACGACCGCGCCTCTGATCTCGATGACACGGCTGGGTACTGGTCCGT
GGTGCCTTTGAAGAAAAAGGGCGGGAAAGACGAAGGGGAGTGGTCGCGGG
TTTTTTATTCGATCGACCTTCGGATTCCGGCGTGGATTCCTCAGTTTGTG
GTGAACATTCTTAATACGCAAGCCCTGACCTCGGCAACTGCGTGGGTCAA
GACACAAAGTGAGAAGAAATTTCAGGCTTCACTTTCTAGGAAGACTGTAG
CACCTGCTGCTGCTCCTGTTGTCATGATGGGGACTGCGGACGGTGGAAAT
TCAAGGAGGGGCGAGGAGAAGAAGAAGACGAGGAAGTTTGGAGGGGGGGA
TTTGTGGGAGGGTTTCATTGATGAGTTTTCGGATATTATTGACACGGAGA
TGTACGCGCAAAAAGTAAGAGCGAGGGAGGAGAAGCGGAAGGATGAGGAA
GCAGGGAAAGAGAAGAAGGTAAAAAGGAGAAAGAAGGGGAAGGAAGGAGT
GAAGGTAGAGATGTCCGGGCCAGGACACGACGACGCGCGCAATGTTTTGG
TGTTTTTGTGGGTGTCGATTTTGACGTATGGGCTGATTCAGCTGTGGTCT
AAGGATGACAAGAGCAACACAAAGCAGCAGCCGCAACAGCACCAGCAGAA
CAGTCGAGTGGCGACGGCTTGA
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protein sequence of NO04G03650.1

>NO04G03650.1-protein ID=NO04G03650.1-protein|Name=NO04G03650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MELLEEEDAEVMMGTFLVLASAQTRALETQFKATPPQVHHKEGIGNKNAT
TQFSPFSHLLQPLPGQAASPKFSHPHNGVLEKYELKVPKISLDSDALSKL
EKGQPVKKQIQSAGKSGGRGIVIQDVHAPPAMVMDRILDFGNYNKMVPNV
AQCGNYATRKLRNGDLELKTRYVLSILGFKLEYFVRHIYRPSIHSLVWTL
DYDRASDLDDTAGYWSVVPLKKKGGKDEGEWSRVFYSIDLRIPAWIPQFV
VNILNTQALTSATAWVKTQSEKKFQASLSRKTVAPAAAPVVMMGTADGGN
SRRGEEKKKTRKFGGGDLWEGFIDEFSDIIDTEMYAQKVRAREEKRKDEE
AGKEKKVKRRKKGKEGVKVEMSGPGHDDARNVLVFLWVSILTYGLIQLWS
KDDKSNTKQQPQQHQQNSRVATA*
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mRNA from alignment at chr4:989095..991004+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03650.1 ID=NO04G03650.1|Name=NO04G03650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1910bp|location=Sequence derived from alignment at chr4:989095..991004+ (Nannochloropsis oceanica)
ATGGAGCTGCTGGAGGAGGAGGATGCCGAGGTGATGATGGGGACGTTCCT
CGTCTTGGCTTCGGCACAAACTCGTGCTCTTGAGACACAGTTCAAAGCAA
CACCTCCACAAGTCCACCACAAAGAGGGCATTGGTAACAAAAATGCGACT
ACTCAATTTTCCCCTTTCAGCCACCTTCTGCAGGTGCGCCCAGACCTGCC
TCACATCTTCGTCTCATCCAAGCAAGTTCCGCAAGGAAAATGCTGCCGCG
CACGCCCTTGGCCTTGCTTCTGCTGGTAGCCCTTGTCGTCCTACTTCAGC
CGCTCCCTGGCCAAGCGGCCAGCCCCAAATTTTCGCATCCCCACAATGGC
GTACTGGAGGTAAAAAGACGAGAGGAAAAGAGATACATTCTCCGCGTCGA
GGTGTAGTGATGGCCGACGGCCTAAACACGAGGATGATCATGCAATGTAA
TCATGTACCTTTCTTGACACTACAAATAGAAATACGAGCTTAAGGTTCCC
AAGATCAGCCTTGACAGCGACGCCTTGTCCAAGCTCGAAAAGGGTCAGCC
GGTAAAGAAGCAGATTCAGTCAGCGGGCAAATCTGGGGGAAGGGGCATTG
TCATCCAGGATGTGCATGCCCCACCCGCCATGGTGATGGACCGCATTTTG
GATTTTGGCAATTACAACAAAATGGTGCCAAATGTTGCGCAGTGCGGTAA
CTATGCTACGCGGAAATTGAGGAATGTGAGTGTGGAGGATGGGGGGCAGA
TGGCAGGGTAGTGAGAAAGGAAAGGCAAAAAAGGCAGCGGCATGACCAGG
GTGGAGCCCGCGAAGTGTCATCATCAATTCATTTTGTGTGGCTGCGATTA
AGCATTAATTTTGCCCGCCCACTCCGGTCCATGACGAGTCTTGACAAAGA
GCGACGGAGGCAAGACTTGGGGGGCATTTGGCGCCAACGAGCCTACTGGT
GGTTGCATGTTTTGGGAAGTCTAGCACTGAACAATTGTTGCGTCCTCAAT
AACTCCTAATGTGATAGTTCATATTCCACTATGCTTTTCCAATCACAGCG
AAACAGCCCCTCATTCCCTTCCTCCCTTCATCCATTCCAAATGAACACGA
TTATGTCCTCCCGATTCATCCACACAGGGTGACTTGGAGCTGAAAACACG
CTATGTCCTCTCGATCCTTGGCTTTAAACTCGAATACTTCGTTCGACACA
TCTACCGCCCCTCCATCCACTCGCTCGTTTGGACGCTCGACTACGACCGC
GCCTCTGATCTCGATGACACGGCTGGGTACTGGTCCGTGGTGCCTTTGAA
GAAAAAGGGCGGGAAAGACGAAGGGGAGTGGTCGCGGGTTTTTTATTCGA
TCGACCTTCGGATTCCGGCGTGGATTCCTCAGTTTGTGGTGAACATTCTT
AATACGCAAGCCCTGACCTCGGCAACTGCGTGGGTCAAGACACAAAGTGA
GAAGAAATTTCAGGCTTCACTTTCTAGGAAGACTGTAGCACCTGCTGCTG
CTCCTGTTGTCATGATGGGGACTGCGGACGGTGGAAATTCAAGGAGGGGC
GAGGAGAAGAAGAAGACGAGGAAGTTTGGAGGGGGGGATTTGTGGGAGGG
TTTCATTGATGAGTTTTCGGATATTATTGACACGGAGATGTACGCGCAAA
AAGTAAGAGCGAGGGAGGAGAAGCGGAAGGATGAGGAAGCAGGGAAAGAG
AAGAAGGTAAAAAGGAGAAAGAAGGGGAAGGAAGGAGTGAAGGTAGAGAT
GTCCGGGCCAGGACACGACGACGCGCGCAATGTTTTGGTGTTTTTGTGGG
TGTCGATTTTGACGTATGGGCTGATTCAGCTGTGGTCTAAGGATGACAAG
AGCAACACAAAGCAGCAGCCGCAACAGCACCAGCAGAACAGTCGAGTGGC
GACGGCTTGA
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Coding sequence (CDS) from alignment at chr4:989095..991004+

>NO04G03650.1 ID=NO04G03650.1|Name=NO04G03650.1|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at chr4:989095..991004+ (Nannochloropsis oceanica)
ATGGAGCTGCTGGAGGAGGAGGATGCCGAGGTGATGATGGGGACGTTCCT
CGTCTTGGCTTCGGCACAAACTCGTGCTCTTGAGACACAGTTCAAAGCAA
CACCTCCACAAGTCCACCACAAAGAGGGCATTGGTAACAAAAATGCGACT
ACTCAATTTTCCCCTTTCAGCCACCTTCTGCAGCCGCTCCCTGGCCAAGC
GGCCAGCCCCAAATTTTCGCATCCCCACAATGGCGTACTGGAGAAATACG
AGCTTAAGGTTCCCAAGATCAGCCTTGACAGCGACGCCTTGTCCAAGCTC
GAAAAGGGTCAGCCGGTAAAGAAGCAGATTCAGTCAGCGGGCAAATCTGG
GGGAAGGGGCATTGTCATCCAGGATGTGCATGCCCCACCCGCCATGGTGA
TGGACCGCATTTTGGATTTTGGCAATTACAACAAAATGGTGCCAAATGTT
GCGCAGTGCGGTAACTATGCTACGCGGAAATTGAGGAATGGTGACTTGGA
GCTGAAAACACGCTATGTCCTCTCGATCCTTGGCTTTAAACTCGAATACT
TCGTTCGACACATCTACCGCCCCTCCATCCACTCGCTCGTTTGGACGCTC
GACTACGACCGCGCCTCTGATCTCGATGACACGGCTGGGTACTGGTCCGT
GGTGCCTTTGAAGAAAAAGGGCGGGAAAGACGAAGGGGAGTGGTCGCGGG
TTTTTTATTCGATCGACCTTCGGATTCCGGCGTGGATTCCTCAGTTTGTG
GTGAACATTCTTAATACGCAAGCCCTGACCTCGGCAACTGCGTGGGTCAA
GACACAAAGTGAGAAGAAATTTCAGGCTTCACTTTCTAGGAAGACTGTAG
CACCTGCTGCTGCTCCTGTTGTCATGATGGGGACTGCGGACGGTGGAAAT
TCAAGGAGGGGCGAGGAGAAGAAGAAGACGAGGAAGTTTGGAGGGGGGGA
TTTGTGGGAGGGTTTCATTGATGAGTTTTCGGATATTATTGACACGGAGA
TGTACGCGCAAAAAGTAAGAGCGAGGGAGGAGAAGCGGAAGGATGAGGAA
GCAGGGAAAGAGAAGAAGGTAAAAAGGAGAAAGAAGGGGAAGGAAGGAGT
GAAGGTAGAGATGTCCGGGCCAGGACACGACGACGCGCGCAATGTTTTGG
TGTTTTTGTGGGTGTCGATTTTGACGTATGGGCTGATTCAGCTGTGGTCT
AAGGATGACAAGAGCAACACAAAGCAGCAGCCGCAACAGCACCAGCAGAA
CAGTCGAGTGGCGACGGCTTGA
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Synonyms
Publications