NO04G03510.1, NO04G03510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03510.1
Unique NameNO04G03510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1833
Alignment locationchr4:960140..962305 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:960140..962305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03510.1 vs.
Match: EWM28748.1 (udp-sugar transporter ust74c [Nannochloropsis gaditana])

HSP 1 Score: 454.5 bits (1168), Expect = 3.300e-124
Identity = 258/386 (66.84%), Postives = 295/386 (76.42%), Query Frame = 0 
Query:    1 MLTAGKSMLGSSPTPLLSATGEAPVLLPESGSKHLGKNEPAITQQRARHHGLVVSTPFEKLGSALFFASTSFSIIFVNKALLASTAHGFFGFPSFFAVAACQFFSTSFVLYTLNLAGRVQITDPSLDVLKVMGPLASIGLINVLCGLGGTQKVSLPMFTVLRRFSIPMTMGLEWLLLGVMASRQIQFSVFLMVAGAVLAGIADLNFNLVGYLFILFNNVCTALNGVVMKRTLTVSPNISRMAVLYYNSLFGAVFMTGLLLCRPEEMQAVRNFPSWKDPAFVLTFFLAAAMGSLLNYATFLCTHHNSALTTTVVGCLKNLATTYFSMLFLSDYVFSFTNFLGVTISVIGSLLYSYIELGKYRNGKITKDDESS---SSSSGEGIEKV 384
            M   G S+     T L+SAT +A V       KHL  N+    Q+   + G   ST  +KLGSALFFA TSFSIIFVNKALLAS AHGF GFPSFFAVAACQ+  T  +L  L L GRV I + S +VL+ + PLA +G +NVLCGLGGTQK+SLPMFTVLRRFSIPMTMGLEWLLLGV ASR +QFSVFLMV GAVLAG+AD++F+ VGYLFI  NN+ TALNGV+MKRTLT S NIS+MAVLYYNSLFGAVFMT LL CRP E+QA++NFPS KDP F++ FFLAA  GSLLNYATFLCTHHNSALTTTVVGCLKNLATTYFSM FL DYVFS++NF GVT+SV GS++YSYIEL K      +K  +SS    SS   G +KV
Sbjct:    1 MFREGGSLKLPPRTALVSATAKAQV-----PRKHLDSNQD---QRLMAYTGEPTSTSAQKLGSALFFALTSFSIIFVNKALLASPAHGFLGFPSFFAVAACQYVFTGGLLLALKLRGRVDIPELSSNVLRCLWPLALVGSLNVLCGLGGTQKISLPMFTVLRRFSIPMTMGLEWLLLGVAASRSVQFSVFLMVFGAVLAGLADMSFDPVGYLFIFGNNIFTALNGVIMKRTLT-SSNISKMAVLYYNSLFGAVFMTTLLFCRPRELQAIKNFPSLKDPTFLIVFFLAAGTGSLLNYATFLCTHHNSALTTTVVGCLKNLATTYFSMFFLPDYVFSWSNFWGVTVSVAGSVIYSYIELVKQEKNARSKASDSSVSGISSENRGSKKV 377
The following BLAST results are available for this feature:
BLAST of NO04G03510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28748.13.300e-12466.84udp-sugar transporter ust74c [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03510NO04G03510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03510.1NO04G03510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03510.1.cds1NO04G03510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03510.1.cds2NO04G03510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03510.1.cds3NO04G03510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03510.1 ID=NO04G03510.1|Name=NO04G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp
CCGCTCCGCAAGACCGACCGACCTTTGATTAAAGTGTGTGTGCAGATAAA
TACATTTGTGGGTCGCGCCGCTTGATTGCTTTGCGTGAGAGCGGTGTTGG
CAAGGACGGGGTTAGCACAGAAGCATATCGCTTACTTTCATCATTCGAAT
CATCATCAATCATCATCCATCACCTGTCGCCAAATATGTGCTGGAGAGAC
CGTAACACCCGTCGAAATATCGCCTGCTACGGCGCAACATTCAATGTATG
CACCTCACAACATCGAAAGGCTTTGTAATTGTTTAGCCCCGTAGCGTGGC
GAAAGGCGGCCCGGACTCCCTCCTACCCTTACTGGCGCACTGATAATGAC
GGACGTGGCCCATTGTCCAGAAATAGCTCCCTTACAAAGCCATACTAAAA
CACCAATCAATAGTCCACGCCCATACCCTGTGTAAACACACTCTCTTCCT
CGGTAGCTCAAGAAAATCCCCCACTCCCGCCGCTTTCCACACACAGCCGT
CTTCCAATACCATGCTGACCGCAGGCAAGTCCATGCTCGGCTCTTCGCCC
ACCCCCTTGCTTTCAGCCACCGGCGAGGCACCCGTACTCCTGCCTGAATC
CGGAAGCAAACATCTCGGAAAAAACGAGCCAGCCATTACACAGCAGCGGG
CCCGTCACCACGGGCTCGTCGTGTCCACGCCCTTTGAAAAGCTGGGCAGT
GCCCTCTTCTTCGCTTCGACCTCATTTTCCATCATATTTGTGAATAAGGC
TTTGCTCGCTTCTACTGCCCATGGATTCTTTGGGTTTCCATCCTTTTTCG
CCGTAGCTGCCTGTCAATTCTTTTCTACGTCATTTGTACTTTACACACTT
AATTTAGCGGGCCGCGTCCAGATTACCGATCCGTCTTTAGACGTGTTGAA
AGTGATGGGACCCCTGGCTTCGATTGGGTTGATTAATGTTCTTTGTGGCT
TGGGAGGGACGCAGAAGGTCAGCTTACCCATGTTTACGGTATTGAGACGT
TTTTCGATCCCGATGACGATGGGGTTGGAGTGGTTGTTGTTGGGAGTAAT
GGCGTCTCGACAGATTCAATTTAGCGTATTTTTAATGGTGGCTGGGGCTG
TGCTTGCGGGGATCGCCGACTTGAATTTTAACCTGGTCGGATACTTGTTT
ATTTTGTTTAACAATGTGTGCACGGCACTTAACGGAGTGGTGATGAAGAG
GACGTTGACGGTTTCGCCCAACATCAGCAGGATGGCAGTGCTTTATTACA
ATAGCCTGTTCGGGGCTGTTTTCATGACCGGTCTCCTTCTCTGTCGCCCC
GAGGAAATGCAAGCCGTCCGTAACTTTCCATCTTGGAAAGACCCTGCTTT
TGTGTTAACCTTTTTTCTAGCCGCAGCGATGGGCTCTCTGCTTAATTATG
CTACCTTTTTGTGTACGCACCACAATAGCGCCTTAACGACGACGGTTGTG
GGCTGCCTTAAAAATCTAGCCACCACTTACTTCTCCATGCTCTTTCTGTC
CGATTACGTCTTCAGCTTCACCAACTTCCTTGGCGTTACCATTTCAGTCA
TTGGCAGCCTCCTGTACTCTTACATTGAGCTGGGAAAGTACCGAAATGGG
AAGATCACGAAAGACGATGAGAGCAGCAGCAGCAGTAGTGGTGAGGGAAT
TGAGAAGGTCGTTGGAAAGTCTAGGGGTGCATTGATCAGGCATCGACGCC
AGAGGTAGAAGTAGCGGGGATGTACGAGAGAGAATTCTGTACGAGTACAT
GGTTGATGTGTGTGCGCGAAATGTATTCTGAGGGATTAGCTGAACGAACA
AAACAAAAAAGAAGAAAAGAATTGTGTGAATTG
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protein sequence of NO04G03510.1

>NO04G03510.1-protein ID=NO04G03510.1-protein|Name=NO04G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MLTAGKSMLGSSPTPLLSATGEAPVLLPESGSKHLGKNEPAITQQRARHH
GLVVSTPFEKLGSALFFASTSFSIIFVNKALLASTAHGFFGFPSFFAVAA
CQFFSTSFVLYTLNLAGRVQITDPSLDVLKVMGPLASIGLINVLCGLGGT
QKVSLPMFTVLRRFSIPMTMGLEWLLLGVMASRQIQFSVFLMVAGAVLAG
IADLNFNLVGYLFILFNNVCTALNGVVMKRTLTVSPNISRMAVLYYNSLF
GAVFMTGLLLCRPEEMQAVRNFPSWKDPAFVLTFFLAAAMGSLLNYATFL
CTHHNSALTTTVVGCLKNLATTYFSMLFLSDYVFSFTNFLGVTISVIGSL
LYSYIELGKYRNGKITKDDESSSSSSGEGIEKVVGKSRGALIRHRRQR*
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mRNA from alignment at chr4:960140..962305+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03510.1 ID=NO04G03510.1|Name=NO04G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp|location=Sequence derived from alignment at chr4:960140..962305+ (Nannochloropsis oceanica)
CCGCTCCGCAAGACCGACCGACCTTTGATTAAAGTGTGTGTGCAGATAAA
TACATTTGTGGGTCGCGCCGCTTGATTGCTTTGCGTGAGAGCGGTGTTGG
CAAGGACGGGGTTAGCACAGAAGCATATCGCTTACTTTCATCATTCGAAT
CATCATCAATCATCATCCATCACCTGTCGCCAAATATGTGCTGGAGAGAC
CGTAACACCCGTCGAAATATCGCCTGCTACGGCGCAACATTCAATGTATG
CACCTCACAACATCGAAAGGCTTTGTAATTGTTTAGCCCCGTAGCGTGGC
GAAAGGCGGCCCGGACTCCCTCCTACCCTTACTGGCGCACTGATAATGAC
GGACGTGGCCCATTGTCCAGAAATAGCTCCCTTACAAAGCCATACTAAAA
CACCAATCAATAGTCCACGCCCATACCCTGTGTAAACACACTCTCTTCCT
CGGTAGCTCAAGAAAATCCCCCACTCCCGCCGCTTTCCACACACAGCCGT
CTTCCAATACCATGCTGACCGCAGGCAAGTCCATGCTCGGCTCTTCGCCC
ACCCCCTTGCTTTCAGCCACCGGCGAGGCACCCGTACTCCTGCCTGAATC
CGGAAGCAAACATCTCGGAAAAAACGAGCCAGCCATTACACAGCAGCGGG
CCCGTCACCACGGGCTCGTCGTGTCCACGCCCTTTGAAAAGCTGGGCAGT
GCCCTCTTCTTCGCTTCGACCTCATTTTCCATCATATTTGTGAATAAGGC
TTTGCTCGCTTCTACTGCCCATGGATTCTTTGGGTTTCCATCCTTTTTCG
CCGTAGCTGCCTGTCAATTCTTTTCTACGTCATTTGTACTTTACACACTT
AATTTAGCGGGCCGCGTCCAGATTACCGATCCGTCTTTAGACGTGTTGAA
AGTGATGGGACCCCTGGCTTCGATTGGGTTGATTAATGTTCTTTGTGGCT
TGGGAGGGACGCAGAAGGTCAGCTTACCCATGTTTACGGTATTGAGACGT
TTTTCGATCCCGATGACGATGGGGTTGGAGTGGTTGTTGTTGGGAGTAAT
GGCGTCTCGACAGATTCAATTTAGCGTATTTTTAATGGTGGCTGGGGCTG
TGCTTGCGGGGATCGCCGACTTGAATTTTAACCTGGTCGGATACTTGTTT
ATTTTGTTTAACAATGTGTGCACGGCACTTAACGGAGTGGTGATGAAGAG
GACGTTGACGGTTTCGCCCAACATCAGCAGGATGGCAGTGCTTTATTACA
ATAGCCTGTTCGGGTAAGTAATGAAAATTGAGACAGAGGGGAGGAGTACT
CATGTCCTTATACCGCCAATTTTCCTATGTAATGGTGCAAAAAATATATT
CAAAGCACTTACTTATTTCTTCAAGTTCATACCCATCGTCTACGCAAGAG
CCCACCGCCGAAACCCCAAAACCCATTTATCTCTATTAACTGCGTCCCAC
TCCAATACAATTTAGGGCTGTTTTCATGACCGGTCTCCTTCTCTGTCGCC
CCGAGGAAATGCAAGCCGTCCGTAACTTTCCATCTTGGAAAGACCCTGCT
TTTGTGTTAACCTTTTTTCTAGCCGCAGCGATGGGCTCTCTGCTTAATTA
TGCTACCTTTTTGTGTACGCACCACAATAGCGCCTTAACGACGACGGTTG
TGGGCTGCCTTAAAAATCTAGGTAGGTTGGAAATGATAGCTGGCCTTATG
TGTCCCTTTCTTCCTTTTCTTCTTCTTTTTGTGAAGAATTGGGATAAGAC
TATAAAAGCCGGCAACTTATCTGCTCTGCCTACCCCATCCTTTCCCTCGC
AGCCACCACTTACTTCTCCATGCTCTTTCTGTCCGATTACGTCTTCAGCT
TCACCAACTTCCTTGGCGTTACCATTTCAGTCATTGGCAGCCTCCTGTAC
TCTTACATTGAGCTGGGAAAGTACCGAAATGGGAAGATCACGAAAGACGA
TGAGAGCAGCAGCAGCAGTAGTGGTGAGGGAATTGAGAAGGTCGTTGGAA
AGTCTAGGGGTGCATTGATCAGGCATCGACGCCAGAGGTAGAAGTAGCGG
GGATGTACGAGAGAGAATTCTGTACGAGTACATGGTTGATGTGTGTGCGC
GAAATGTATTCTGAGGGATTAGCTGAACGAACAAAACAAAAAAGAAGAAA
AGAATTGTGTGAATTG
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Coding sequence (CDS) from alignment at chr4:960140..962305+

>NO04G03510.1 ID=NO04G03510.1|Name=NO04G03510.1|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at chr4:960140..962305+ (Nannochloropsis oceanica)
ATGCTGACCGCAGGCAAGTCCATGCTCGGCTCTTCGCCCACCCCCTTGCT
TTCAGCCACCGGCGAGGCACCCGTACTCCTGCCTGAATCCGGAAGCAAAC
ATCTCGGAAAAAACGAGCCAGCCATTACACAGCAGCGGGCCCGTCACCAC
GGGCTCGTCGTGTCCACGCCCTTTGAAAAGCTGGGCAGTGCCCTCTTCTT
CGCTTCGACCTCATTTTCCATCATATTTGTGAATAAGGCTTTGCTCGCTT
CTACTGCCCATGGATTCTTTGGGTTTCCATCCTTTTTCGCCGTAGCTGCC
TGTCAATTCTTTTCTACGTCATTTGTACTTTACACACTTAATTTAGCGGG
CCGCGTCCAGATTACCGATCCGTCTTTAGACGTGTTGAAAGTGATGGGAC
CCCTGGCTTCGATTGGGTTGATTAATGTTCTTTGTGGCTTGGGAGGGACG
CAGAAGGTCAGCTTACCCATGTTTACGGTATTGAGACGTTTTTCGATCCC
GATGACGATGGGGTTGGAGTGGTTGTTGTTGGGAGTAATGGCGTCTCGAC
AGATTCAATTTAGCGTATTTTTAATGGTGGCTGGGGCTGTGCTTGCGGGG
ATCGCCGACTTGAATTTTAACCTGGTCGGATACTTGTTTATTTTGTTTAA
CAATGTGTGCACGGCACTTAACGGAGTGGTGATGAAGAGGACGTTGACGG
TTTCGCCCAACATCAGCAGGATGGCAGTGCTTTATTACAATAGCCTGTTC
GGGGCTGTTTTCATGACCGGTCTCCTTCTCTGTCGCCCCGAGGAAATGCA
AGCCGTCCGTAACTTTCCATCTTGGAAAGACCCTGCTTTTGTGTTAACCT
TTTTTCTAGCCGCAGCGATGGGCTCTCTGCTTAATTATGCTACCTTTTTG
TGTACGCACCACAATAGCGCCTTAACGACGACGGTTGTGGGCTGCCTTAA
AAATCTAGCCACCACTTACTTCTCCATGCTCTTTCTGTCCGATTACGTCT
TCAGCTTCACCAACTTCCTTGGCGTTACCATTTCAGTCATTGGCAGCCTC
CTGTACTCTTACATTGAGCTGGGAAAGTACCGAAATGGGAAGATCACGAA
AGACGATGAGAGCAGCAGCAGCAGTAGTGGTGAGGGAATTGAGAAGGTCG
TTGGAAAGTCTAGGGGTGCATTGATCAGGCATCGACGCCAGAGGTAG
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Synonyms
Publications