NO04G03390.1, NO04G03390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03390.1
Unique NameNO04G03390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1287
Alignment locationchr4:933394..934811 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:933394..934811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03390.1 vs.
Match: CBJ29901.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 362.1 bits (928), Expect = 2.400e-96
Identity = 197/358 (55.03%), Postives = 246/358 (68.72%), Query Frame = 0 
Query:   35 EKVTGEAVVQLAEALINIESLSGREHAMAHALKGWLNKRGWEVTLQPVAAAAGHEKEGDRWNVYAFRPGDESAEASHRHGKGSRVLLNTHIDTVPPFYPATVDKKEG--VIRGRGACDTKSILAAQLLAAQRLVRAGKADDLGLLYVVSEETDHSGMKRANALGLRPQYLIVGEPTESKMIRSQKGILKLKLLSQGVSCHSGYPKLGKSAIDPLIDALHELKHAHWPQSEELGSTTLNIGLLRGGHAANALAAEAEATLMFRVISPPEQILETVQATVGER-AGVEVITANNPLKLGTLSGYQTDVASFNTDIAYFDLTESGAKAFLIGPGSILDAHSDHELIRISELQRAVDYYEEL 390
            E V  +  V+LA  LI++ESLSG E  MA  LK WL KR W V LQ V           R N+YA RPG  +        +G RVL N+HIDTVPPF+ A +   +G  +I+GRGACDTK ILAAQLLA Q L   G  DD+GLLYVVSEETDHSGM +AN LGL P+Y+IVGEPT SKM+R QKG+LK++L  +GV+CHSGYP LG SAIDPL++ LH +KH  WP SEELG TT+NIGL+ GG AANALA  +EA +MFR+I  PE +L+ V+A   E    VEVI+ N P+ L  L  ++ DVA++NTDIAYF L +   +A L GPGSI  AHS  E I ++EL+ AV+ Y+++
Sbjct:   15 EDVRSDEAVKLAMDLIDVESLSGHEQPMAVVLKEWLEKRDWVVQLQEVEPQKSTVDGKVRHNLYARRPGIPATRT-----EGPRVLFNSHIDTVPPFFGAELCDVDGEMIIKGRGACDTKGILAAQLLALQALADEG-VDDIGLLYVVSEETDHSGMIKANELGLEPRYMIVGEPTGSKMMRLQKGMLKVRLSCRGVACHSGYPHLGVSAIDPLVEVLHAIKHRAWPSSEELGETTVNIGLVEGGQAANALAEASEAIVMFRLIQEPEGVLDAVKAIAAEHDCAVEVISKNAPVSLEVLPDFEADVAAYNTDIAYFKLPK--GRALLYGPGSIHHAHSRIEKIGVTELKDAVEAYKKI 364
The following BLAST results are available for this feature:
BLAST of NO04G03390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ29901.12.400e-9655.03conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03390NO04G03390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03390.1NO04G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03390.1.cds1NO04G03390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03390.1.cds2NO04G03390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03390.1 ID=NO04G03390.1|Name=NO04G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp
ATGAGCACCGCGACACCTGCCAAGCGACGCTGGGTTGAACCGCTTCCTCC
GGCCACATCTTCCCATTCACAACCCGCGTTGCCCGACGTTGACGAGGAGA
ACGAGAAGGTGACAGGTGAGGCGGTTGTCCAGCTGGCAGAAGCGCTCATC
AATATAGAATCCTTGTCTGGACGCGAGCATGCGATGGCGCATGCCTTGAA
AGGATGGTTGAACAAGCGGGGATGGGAAGTTACCCTCCAGCCCGTCGCGG
CCGCCGCTGGCCATGAGAAAGAGGGCGATCGCTGGAATGTCTATGCCTTC
CGTCCCGGAGATGAATCCGCTGAAGCGTCACACCGGCACGGCAAAGGTTC
ACGCGTTCTGCTTAATACACACATTGATACCGTCCCGCCCTTTTATCCAG
CAACCGTCGACAAAAAAGAGGGCGTGATCCGCGGCCGGGGCGCGTGCGAC
ACGAAAAGCATTTTGGCAGCACAGTTACTCGCGGCACAACGTTTAGTCAG
AGCCGGAAAAGCTGATGATCTGGGACTGCTCTACGTAGTGTCTGAGGAGA
CAGATCACAGCGGGATGAAACGTGCGAACGCCCTTGGACTGCGCCCTCAG
TACTTAATCGTAGGAGAACCCACTGAGTCCAAGATGATCCGGTCCCAAAA
GGGGATTTTGAAGCTAAAGCTCCTATCGCAAGGCGTATCCTGTCATAGCG
GTTATCCGAAACTCGGGAAGTCTGCGATTGACCCACTCATCGATGCCCTC
CACGAGCTCAAGCACGCGCACTGGCCGCAAAGCGAAGAGCTGGGCTCCAC
CACTCTCAATATTGGTCTCTTGCGAGGCGGACATGCAGCAAACGCCTTGG
CAGCCGAAGCGGAGGCCACCCTGATGTTCCGCGTCATTTCCCCGCCAGAG
CAGATTCTGGAGACCGTGCAAGCGACGGTGGGAGAAAGGGCGGGGGTTGA
GGTTATCACCGCCAACAACCCTCTCAAGTTGGGCACGCTGTCTGGGTACC
AAACAGACGTCGCAAGCTTTAACACGGACATTGCCTATTTTGACTTAACC
GAATCTGGGGCCAAGGCCTTTTTGATCGGCCCTGGTTCTATTCTGGACGC
GCATAGTGACCATGAGCTTATTCGCATCTCCGAGCTCCAGCGGGCGGTAG
ACTACTATGAGGAGCTGCTGTTGCGTCTCCTCCAGAGTAGCGGCAGCAGT
AGCAACGGCAGCGGCGTGCTAGAGGGGCATGCGGGGGAAGGAAAGGACAC
GGATAAAGGAAGAGAACGGAAGGAAACTCAAAAGTGA
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protein sequence of NO04G03390.1

>NO04G03390.1-protein ID=NO04G03390.1-protein|Name=NO04G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MSTATPAKRRWVEPLPPATSSHSQPALPDVDEENEKVTGEAVVQLAEALI
NIESLSGREHAMAHALKGWLNKRGWEVTLQPVAAAAGHEKEGDRWNVYAF
RPGDESAEASHRHGKGSRVLLNTHIDTVPPFYPATVDKKEGVIRGRGACD
TKSILAAQLLAAQRLVRAGKADDLGLLYVVSEETDHSGMKRANALGLRPQ
YLIVGEPTESKMIRSQKGILKLKLLSQGVSCHSGYPKLGKSAIDPLIDAL
HELKHAHWPQSEELGSTTLNIGLLRGGHAANALAAEAEATLMFRVISPPE
QILETVQATVGERAGVEVITANNPLKLGTLSGYQTDVASFNTDIAYFDLT
ESGAKAFLIGPGSILDAHSDHELIRISELQRAVDYYEELLLRLLQSSGSS
SNGSGVLEGHAGEGKDTDKGRERKETQK*
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mRNA from alignment at chr4:933394..934811+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03390.1 ID=NO04G03390.1|Name=NO04G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp|location=Sequence derived from alignment at chr4:933394..934811+ (Nannochloropsis oceanica)
ATGAGCACCGCGACACCTGCCAAGCGACGCTGGGTTGAACCGCTTCCTCC
GGCCACATCTTCCCATTCACAACCCGCGTTGCCCGACGTTGACGAGGAGA
ACGAGAAGGTGACAGGTGAGGCGGTTGTCCAGCTGGCAGAAGCGCTCATC
AATATAGAATCCTTGTCTGGACGCGAGCATGCGATGGCGCATGCCTTGAA
AGGATGGTTGAACAAGCGGGGATGGGAAGTTACCCTCCAGCCCGTCGCGG
CCGCCGCTGGCCATGAGAAAGAGGTGAGGGAGAAGTGGATTAGAGAAAGT
ATTTCCCCCTGTAATGACTTCGCGCAGCGTACTTTGTAACGCCTTGTACA
GGGAAATCTAAACTCTGCAACCCTGCCTTTCACACACGCACCATACGCAT
GCAGGGCGATCGCTGGAATGTCTATGCCTTCCGTCCCGGAGATGAATCCG
CTGAAGCGTCACACCGGCACGGCAAAGGTTCACGCGTTCTGCTTAATACA
CACATTGATACCGTCCCGCCCTTTTATCCAGCAACCGTCGACAAAAAAGA
GGGCGTGATCCGCGGCCGGGGCGCGTGCGACACGAAAAGCATTTTGGCAG
CACAGTTACTCGCGGCACAACGTTTAGTCAGAGCCGGAAAAGCTGATGAT
CTGGGACTGCTCTACGTAGTGTCTGAGGAGACAGATCACAGCGGGATGAA
ACGTGCGAACGCCCTTGGACTGCGCCCTCAGTACTTAATCGTAGGAGAAC
CCACTGAGTCCAAGATGATCCGGTCCCAAAAGGGGATTTTGAAGCTAAAG
CTCCTATCGCAAGGCGTATCCTGTCATAGCGGTTATCCGAAACTCGGGAA
GTCTGCGATTGACCCACTCATCGATGCCCTCCACGAGCTCAAGCACGCGC
ACTGGCCGCAAAGCGAAGAGCTGGGCTCCACCACTCTCAATATTGGTCTC
TTGCGAGGCGGACATGCAGCAAACGCCTTGGCAGCCGAAGCGGAGGCCAC
CCTGATGTTCCGCGTCATTTCCCCGCCAGAGCAGATTCTGGAGACCGTGC
AAGCGACGGTGGGAGAAAGGGCGGGGGTTGAGGTTATCACCGCCAACAAC
CCTCTCAAGTTGGGCACGCTGTCTGGGTACCAAACAGACGTCGCAAGCTT
TAACACGGACATTGCCTATTTTGACTTAACCGAATCTGGGGCCAAGGCCT
TTTTGATCGGCCCTGGTTCTATTCTGGACGCGCATAGTGACCATGAGCTT
ATTCGCATCTCCGAGCTCCAGCGGGCGGTAGACTACTATGAGGAGCTGCT
GTTGCGTCTCCTCCAGAGTAGCGGCAGCAGTAGCAACGGCAGCGGCGTGC
TAGAGGGGCATGCGGGGGAAGGAAAGGACACGGATAAAGGAAGAGAACGG
AAGGAAACTCAAAAGTGA
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Coding sequence (CDS) from alignment at chr4:933394..934811+

>NO04G03390.1 ID=NO04G03390.1|Name=NO04G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr4:933394..934811+ (Nannochloropsis oceanica)
ATGAGCACCGCGACACCTGCCAAGCGACGCTGGGTTGAACCGCTTCCTCC
GGCCACATCTTCCCATTCACAACCCGCGTTGCCCGACGTTGACGAGGAGA
ACGAGAAGGTGACAGGTGAGGCGGTTGTCCAGCTGGCAGAAGCGCTCATC
AATATAGAATCCTTGTCTGGACGCGAGCATGCGATGGCGCATGCCTTGAA
AGGATGGTTGAACAAGCGGGGATGGGAAGTTACCCTCCAGCCCGTCGCGG
CCGCCGCTGGCCATGAGAAAGAGGGCGATCGCTGGAATGTCTATGCCTTC
CGTCCCGGAGATGAATCCGCTGAAGCGTCACACCGGCACGGCAAAGGTTC
ACGCGTTCTGCTTAATACACACATTGATACCGTCCCGCCCTTTTATCCAG
CAACCGTCGACAAAAAAGAGGGCGTGATCCGCGGCCGGGGCGCGTGCGAC
ACGAAAAGCATTTTGGCAGCACAGTTACTCGCGGCACAACGTTTAGTCAG
AGCCGGAAAAGCTGATGATCTGGGACTGCTCTACGTAGTGTCTGAGGAGA
CAGATCACAGCGGGATGAAACGTGCGAACGCCCTTGGACTGCGCCCTCAG
TACTTAATCGTAGGAGAACCCACTGAGTCCAAGATGATCCGGTCCCAAAA
GGGGATTTTGAAGCTAAAGCTCCTATCGCAAGGCGTATCCTGTCATAGCG
GTTATCCGAAACTCGGGAAGTCTGCGATTGACCCACTCATCGATGCCCTC
CACGAGCTCAAGCACGCGCACTGGCCGCAAAGCGAAGAGCTGGGCTCCAC
CACTCTCAATATTGGTCTCTTGCGAGGCGGACATGCAGCAAACGCCTTGG
CAGCCGAAGCGGAGGCCACCCTGATGTTCCGCGTCATTTCCCCGCCAGAG
CAGATTCTGGAGACCGTGCAAGCGACGGTGGGAGAAAGGGCGGGGGTTGA
GGTTATCACCGCCAACAACCCTCTCAAGTTGGGCACGCTGTCTGGGTACC
AAACAGACGTCGCAAGCTTTAACACGGACATTGCCTATTTTGACTTAACC
GAATCTGGGGCCAAGGCCTTTTTGATCGGCCCTGGTTCTATTCTGGACGC
GCATAGTGACCATGAGCTTATTCGCATCTCCGAGCTCCAGCGGGCGGTAG
ACTACTATGAGGAGCTGCTGTTGCGTCTCCTCCAGAGTAGCGGCAGCAGT
AGCAACGGCAGCGGCGTGCTAGAGGGGCATGCGGGGGAAGGAAAGGACAC
GGATAAAGGAAGAGAACGGAAGGAAACTCAAAAGTGA
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Synonyms
Publications