NO04G03210.1, NO04G03210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03210.1
Unique NameNO04G03210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length408
Alignment locationchr4:897377..897876 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:897377..897876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03210.1 vs.
Match: EWM28797.1 (erg28 like protein [Nannochloropsis gaditana])

HSP 1 Score: 162.2 bits (409), Expect = 1.200e-36
Identity = 93/165 (56.36%), Postives = 109/165 (66.06%), Query Frame = 0 
Query:    1 MKNLLRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVRSAMPPFIIAT--------------------------------LSVLLLAAGYSYIVVEDGGSTK 134
            MK LLR+WLI VA LRVLSV+LGY  PATL +SVFG A  QVTPLTARTFG WTLLS+++TLMCALNIESGPLYRTTMASF +A+++F LE  +Y TVD+RSAM PFIIA+                                 S L++A  YS IVVED   +K
Sbjct:    1 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDFPICVQESAYLSFTSGLNTTATSTLVMAIAYSSIVVEDTKKSK 165
The following BLAST results are available for this feature:
BLAST of NO04G03210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28797.11.200e-3656.36erg28 like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03210NO04G03210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03210.1NO04G03210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03210.1.cds1NO04G03210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03210.1.cds2NO04G03210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03210.1 ID=NO04G03210.1|Name=NO04G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=408bp
ATGAAGAACCTATTGCGTGTCTGGCTCATTTGCGTCGCGTCCCTCCGCGT
CCTCTCTGTCGTCTTAGGCTACTTGCAGCCAGCCACGCTAGCTAAGAGCG
TCTTCGGACTGGCCACGGATCAAGTAACCCCGCTCACAGCACGGACTTTT
GGCATTTGGACCTTGCTCTCCGCAATTATCACCCTGATGTGTGCTTTAAA
CATCGAGTCAGGGCCCTTGTACCGTACCACGATGGCTTCATTCGCCGTGG
CCCTGCTCTACTTCGTCCTCGAGGTCGGTGTCTACCACACGGTCGACGTC
CGCTCGGCAATGCCGCCCTTCATCATCGCCACACTATCAGTCCTCTTGCT
GGCGGCGGGCTATTCATATATTGTTGTGGAGGATGGCGGAAGCACGAAAA
GAAGGTAA
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protein sequence of NO04G03210.1

>NO04G03210.1-protein ID=NO04G03210.1-protein|Name=NO04G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MKNLLRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTF
GIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDV
RSAMPPFIIATLSVLLLAAGYSYIVVEDGGSTKRR*
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mRNA from alignment at chr4:897377..897876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03210.1 ID=NO04G03210.1|Name=NO04G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=500bp|location=Sequence derived from alignment at chr4:897377..897876+ (Nannochloropsis oceanica)
ATGAAGAACCTATTGCGTGTCTGGCTCATTTGCGTCGCGTCCCTCCGCGT
CCTCTCTGTCGTCTTAGGCTACTTGCAGCCAGCCACGCTAGCTAAGAGCG
TCTTCGGACTGGCCACGGATCAAGTAACCCCGCTCACAGCACGGACTTTT
GGCATTTGGACCTTGCTCTCCGCAATTATCACCCTGATGTGTGCTTTAAA
CATCGAGTCAGGGCCCTTGTACCGTACCACGATGGCTTCATTCGCCGTGG
CCCTGCTCTACTTCGTCCTCGAGGTCGGTGTCTACCACACGGTCGACGTC
CGCTCGGCAATGCCGCCCTTCATCATCGCCAGTAAGTTACCAGAGGGAAT
CGTGTTTCATTCCTCGCACTTCTCCTTCCTGATACTGATATTCGTAATGC
CCCTCTTTGATTCGTGTCAACAGCACTATCAGTCCTCTTGCTGGCGGCGG
GCTATTCATATATTGTTGTGGAGGATGGCGGAAGCACGAAAAGAAGGTAA
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Coding sequence (CDS) from alignment at chr4:897377..897876+

>NO04G03210.1 ID=NO04G03210.1|Name=NO04G03210.1|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at chr4:897377..897876+ (Nannochloropsis oceanica)
ATGAAGAACCTATTGCGTGTCTGGCTCATTTGCGTCGCGTCCCTCCGCGT
CCTCTCTGTCGTCTTAGGCTACTTGCAGCCAGCCACGCTAGCTAAGAGCG
TCTTCGGACTGGCCACGGATCAAGTAACCCCGCTCACAGCACGGACTTTT
GGCATTTGGACCTTGCTCTCCGCAATTATCACCCTGATGTGTGCTTTAAA
CATCGAGTCAGGGCCCTTGTACCGTACCACGATGGCTTCATTCGCCGTGG
CCCTGCTCTACTTCGTCCTCGAGGTCGGTGTCTACCACACGGTCGACGTC
CGCTCGGCAATGCCGCCCTTCATCATCGCCACACTATCAGTCCTCTTGCT
GGCGGCGGGCTATTCATATATTGTTGTGGAGGATGGCGGAAGCACGAAAA
GAAGGTAA
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Synonyms
Publications