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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:718984..722442 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02710.1 vs.
Match: EWM28659.1 (uncharacterized protein Naga_100177g3 [Nannochloropsis gaditana]) HSP 1 Score: 335.9 bits (860), Expect = 1.500e-88 Identity = 219/376 (58.24%), Postives = 244/376 (64.89%), Query Frame = 0
Query: 1 MARFSRLARELELLRTDPPPGVAAWLVDEADLSRFHASIQGPESTPYAAGLFRLELEVSARYPFEPPKVRFLTPVFHPNVDDCGRICLDSLKPQPQGSWTPSLSIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFERRARDHTAQHAMGE-----EGETTLPRGDMKTGEGKDTDEDKNEGV-------------DEDEDSKMHVAGDDNDSTSSSSNLSDGQATDGGSRRSATASRASQATLRSHGPSSPSFPGQQQQHLQLQLHEEE-------------------EERGWDSDVSICGDDGGASSPSSSSTLSDDDDDESISPNNSLGHGQGSWRGANGREGGKKGEAFVTSAEGMPPRKRARGSATS 340
MARFSRLARELELLR DPPPGVAAW VDEA+LSRFHASI+GPESTPYAAGLFRLELEVS RYPFEPP VRFLTPVFHPNVDD GRICLDSLK QPQG+WTPSL+IPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFE+RAR+HTAQ+AMGE E +G+ + +G +G ED DS+MHVAG++ DS SS+ G D G S S +T SP QQQQ Q Q +E EERGWDSDVSICGD GASS SSS TL D + ++ + G G + +GEAF+TS EGMPPRKRAR S TS
Sbjct: 3 MARFSRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGEATSPGEALAACLQGEAEERDGGGGRASCEQGAVEGEGSVRRGREEKEDADSQMHVAGENEDSASSAG----GGPADAGVSGSVGQLPFSLST-------SPVQQQQQQQRQQQQQERQEQPGARLGEPQKCSEEDEGGEERGWDSDVSICGD--GASS-SSSCTLFDSEVEDIEERHVREGREWGI------VQAQARGEAFLTSGEGMPPRKRARASWTS 358
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02710.1 ID=NO04G02710.1|Name=NO04G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3174bp
GTGAATTTTAATTTGAGCAATCACGGCGCCTCGTTTTTCTTGTTGCTTGT
TATCTTGCTTCTCTTTCCTCCTTGGTTAACACGTTCTCATGTATCGTGCT
TCATACACAAAGACCACCCCCACCACCCCCAAACTTCACAAGCCTTCTAA
TGAGTGTTCATTGCACTCAGTTAAGGAATCACTCTCATCACACTCCGCGA
TAAAGCTGGCCCCCAGAGCCCCCAAGGAGCCGGAGGCAGGCCCTAAAGGG
TAAAAATTAAACATGGCAAGGGTTATAATTTGATAGCTCACGTTCGCAAA
ATACCTTCACGTAAAAGTTTTGGCCTTGAAACATAACGCCCCAAAAAATG
ATCATGTGGATTCTCTTCTCCCGTTTTTGTACTTTTCTCCCACACCCTCA
TGGCTTCTTCAGAGACGAAAGGAAACCCCGGAGCTGCCCTATTGAACGGG
ATTCTGACTTTAATTGTTGTTGCTGCTGCAGCTTTTTCATTTCCTCTTTT
CCCTTCCGTTTGCGGGGCTTGGCATCCAAAAGCAAGCGTTGGGCTTGTGG
CTGGTACGGTCGTTTTTTCCCTGATTCAGGGTGTAGAGGGATGAAGTCCT
CTTCCTCTGCCGGCGCGAGTATAGATTGTCGCTCTGTTCGCTGTTCTGAT
GGTGGTGATGGTAGTGCCGTAGTTATTATGGAGCCTTGGACTTTAACATT
GACGCAAGATTCCTTGCCAATAGAAGTAGTAGCAGCTCCTGTCCTCCGTG
GCACGCCATCCCGTTTGCGAATCCCCTGGCAAAGCAAGCAGGCGTAAGCT
ACCTCATTTCTGAGCATCGGGACTGGCCTCCTGCTATTCTCACCACCGCT
AGTGCGGTCATGCTGATGACGATGATGCTTCTCGTCGTTACGACGGCGAC
GGTTTGCGTTGACGGGGCAGGATGTGCGTCGAGGGTGAAGACGGGCGCGG
GCCGTGAGCCCGGGGACGAGTATGACGCCGCAATCTGGACAGAGCAAGTC
GGGCAAACGCGGGTGAAGTGCGACATGAGCGAGGGCAACGTCGCGAGCGC
GAACAAGTTGCCGGGAGAGAACTCGAGAGTAGGTGGGATTGGTGGGGAGG
TGAGCCAAAGATTGTTGCCATAAGAACTCAAGGCGCAAAAGCAAGGCCGG
ATCCATGGGGGGGAATGCGGCAAGGGAGCCTCTTTGGTTGATTGGGGGAG
GGGCGAGGATGGAGAGGGGCACATGGCATCCTTGCAGAAGACGATGGAGG
GACGTTGTGGCCATTGTGAGGCGATGCTTCCACGACGTCGGTGGTTTTGT
GTTTTGCGAACACACCTGCACAGCTCCACGACCACTCAATGCCACGATTG
CTAGGTCAGGCAGGCAGGCATGTCGTCGGTGCCTTCCTGTTGCGTGTGTA
TGTGCCTACGTAAATTTGATAGGGATGTAGCGGTCTTATGGTCGTGGCTA
TGGAGAGCATCGCTCTCCGTCGCCCACATTCTGTGCACGAAACTCAAAAA
TGCTGCCCTAGCTGACATTACCACATCACACGGACGTACACAGGTACCGC
AGCCAAGGATCACAGCACAAGAACGGGACAAAGCCCATGGCGCGCTTCAG
TCGGCTGGCCCGGGAGCTGGAGCTGCTGCGCACGGATCCACCGCCCGGCG
TCGCGGCTTGGCTAGTGGACGAGGCCGACCTCTCGCGCTTCCATGCCAGT
ATCCAAGGCCCGGAAAGCACGCCCTACGCCGCTGGCCTCTTCCGTCTCGA
ACTCGAAGTTTCGGCCCGATACCCTTTTGAGCCCCCAAAGGTTCGCTTTC
TGACGCCCGTCTTCCATCCCAATGTCGATGACTGCGGTCGGATTTGCCTG
GATAGCCTAAAGCCCCAGCCCCAAGGTTCCTGGACTCCGTCATTGAGCAT
CCCAACACTTCTCACCACGCTTCGCCTTCTCCTCGCTCACCCAAATGCGG
ATGATGGGTTAGCACCTGAGCCGACTGCTCTTTACCAACGGGATTTGCGA
GGGTTTGAAAGGAGGGCAAGGGATCACACGGCGCAGCATGCGATGGGAGA
AGAGGGTGAGACGACTTTGCCGCGAGGAGATATGAAGACGGGGGAGGGCA
AGGACACAGACGAGGACAAAAATGAAGGCGTGGATGAGGACGAGGATAGT
AAGATGCACGTGGCGGGGGATGATAATGATTCCACTTCGTCGTCAAGTAA
TTTAAGTGATGGGCAAGCGACGGATGGAGGGTCTCGCAGAAGCGCCACCG
CTAGTCGTGCCAGTCAAGCAACCCTCAGGAGTCACGGCCCGTCGTCGCCA
TCCTTTCCTGGACAGCAGCAACAGCACCTGCAGCTGCAGCTCCACGAGGA
GGAGGAAGAACGAGGGTGGGACAGCGATGTGAGCATCTGTGGCGATGATG
GTGGGGCATCATCACCCTCGTCTTCCTCCACCCTTTCCGATGACGACGAT
GACGAGAGCATTAGCCCAAACAACTCTCTTGGTCACGGGCAAGGGAGCTG
GAGGGGGGCGAACGGGAGGGAGGGAGGGAAGAAAGGCGAAGCTTTTGTGA
CGAGCGCTGAGGGGATGCCGCCACGGAAGCGGGCCCGAGGCAGCGCGACT
AGCAGTATTGCATCGTAGGATCTGGTCTGTTAGAAGAGTAGATTTAGTGT
ATGTTTTGATGTGTGCATGGTTAGATGTGGCCGTTTGATAGTTGGAATAG
GTAGGGTAGGGGTTCGATGGTTTAGAGAAAGAAAGGTAGGGTGGATGAAG
TGAGTGCATGCGTCGTGCGAGTGATAGACGCGAACAACATTACCGGAAAA
GAGAGAAGAGGAAAGAATCATGCTGGCTCAGTGTACAGGAGACATGAATG
GTAGGGAAGTAAGCAAGGGGTGGATATGCTGGTCAGAGATGCAGCCGAAC
ATGCCAGTAAGCAGTATGCTTTGTGTTTTATGTGCTTGTTAGCGGCAAAT
TAGATCTGGTCAAAGCGCCCGTAACTGTCTTCTTGGGGTTGACCCTGTGA
GTGTAATAGTGTAAAGTGAGGGCTATGAAAAAAAATGCAGGAAAAATTAA
ACACGTCAAGAACAGCGGGAAAACATAGAAATCGGTTTGTCTTCAAAACT
GACACTCAAATTGGACCACGTAGAGAGAAACAGGGAGTCAAGTCAGCATT
TTGAATTTTTTGGCGGTTTCCATC back to topprotein sequence of NO04G02710.1 >NO04G02710.1-protein ID=NO04G02710.1-protein|Name=NO04G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MARFSRLARELELLRTDPPPGVAAWLVDEADLSRFHASIQGPESTPYAAG
LFRLELEVSARYPFEPPKVRFLTPVFHPNVDDCGRICLDSLKPQPQGSWT
PSLSIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFERRARDHTAQ
HAMGEEGETTLPRGDMKTGEGKDTDEDKNEGVDEDEDSKMHVAGDDNDST
SSSSNLSDGQATDGGSRRSATASRASQATLRSHGPSSPSFPGQQQQHLQL
QLHEEEEERGWDSDVSICGDDGGASSPSSSSTLSDDDDDESISPNNSLGH
GQGSWRGANGREGGKKGEAFVTSAEGMPPRKRARGSATSSIAS* back to topmRNA from alignment at chr4:718984..722442+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02710.1 ID=NO04G02710.1|Name=NO04G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3459bp|location=Sequence derived from alignment at chr4:718984..722442+ (Nannochloropsis oceanica)
GTGAATTTTAATTTGAGCAATCACGGCGCCTCGTTTTTCTTGTTGCTTGT
TATCTTGCTTCTCTTTCCTCCTTGGTTAACACGTTCTCATGTATCGTGCT
TCATACACAAAGACCACCCCCACCACCCCCAAACTTCACAAGCCTTCTAA
TGAGTGTTCATTGCACTCAGTTAAGGAATCACTCTCATCACACTCCGCGA
TAAAGCTGGCCCCCAGAGCCCCCAAGGAGCCGGAGGCAGGCCCTAAAGGG
TAAAAATTAAACATGGCAAGGGTTATAATTTGATAGCTCACGTTCGCAAA
ATACCTTCACGTAAAAGTTTTGGCCTTGAAACATAACGCCCCAAAAAATG
ATCATGTGGATTCTCTTCTCCCGTTTTTGTACTTTTCTCCCACACCCTCA
TGGCTTCTTCAGAGACGAAAGGAAACCCCGGAGCTGCCCTATTGAACGGG
ATTCTGACTTTAATTGTTGTTGCTGCTGCAGCTTTTTCATTTCCTCTTTT
CCCTTCCGTTTGCGGGGCTTGGCATCCAAAAGCAAGCGTTGGGCTTGTGG
CTGGTACGGTCGTTTTTTCCCTGATTCAGGGTGTAGAGGGATGAAGTCCT
CTTCCTCTGCCGGCGCGAGTATAGATTGTCGCTCTGTTCGCTGTTCTGAT
GGTGGTGATGGTAGTGCCGTAGTTATTATGGAGCCTTGGACTTTAACATT
GACGCAAGATTCCTTGCCAATAGAAGTAGTAGCAGCTCCTGTCCTCCGTG
GCACGCCATCCCGTTTGCGAATCCCCTGGCAAAGCAAGCAGGCGTAAGCT
ACCTCATTTCTGAGCATCGGGACTGGCCTCCTGCTATTCTCACCACCGCT
AGTGCGGTCATGCTGATGACGATGATGCTTCTCGTCGTTACGACGGCGAC
GGTTTGCGTTGACGGGGCAGGATGTGCGTCGAGGGTGAAGACGGGCGCGG
GCCGTGAGCCCGGGGACGAGTATGACGCCGCAATCTGGACAGAGCAAGTC
GGGCAAACGCGGGTGAAGTGCGACATGAGCGAGGGCAACGTCGCGAGCGC
GAACAAGTTGCCGGGAGAGAACTCGAGAGTAGGTGGGATTGGTGGGGAGG
TGAGCCAAAGATTGTTGCCATAAGAACTCAAGGCGCAAAAGCAAGGCCGG
ATCCATGGGGGGGAATGCGGCAAGGGAGCCTCTTTGGTTGATTGGGGGAG
GGGCGAGGATGGAGAGGGGCACATGGCATCCTTGCAGAAGACGATGGAGG
GACGTTGTGGCCATTGTGAGGCGATGCTTCCACGACGTCGGTGGTTTTGT
GTTTTGCGAACACACCTGCACAGCTCCACGACCACTCAATGCCACGATTG
CTAGGTCAGGCAGGCAGGCATGTCGTCGGTGCCTTCCTGTTGCGTGTGTA
TGTGCCTACGTAAATTTGATAGGGATGTAGCGGTCTTATGGTCGTGGCTA
TGGAGAGCATCGCTCTCCGTCGCCCACATTCTGTGCACGAAACTCAAAAA
TGCTGCCCTAGCTGACATTACCACATCACACGGACGTACACAGGTACCGC
AGCCAAGGATCACAGCACAAGAACGGGACAAAGCCCATGGCGCGCTTCAG
TCGGCTGGCCCGGGAGCTGGAGCTGCTGCGCACGGATCCACCGCCCGGCG
TCGCGGCTTGGCTAGTGGACGAGGCCGACCTCTCGCGCTTCCATGCCAGT
AAGTTGTAAGGGAATACGATGGGGGTAGTGTGTACAGGCGTGAAGGGGAA
TGGGGAAAATGTGCCGGGCGCCACCTGTTCAATATTCACTTGCTTTCCAT
CTTACCCGCCATCGACTTATCCGAACGCGACGCATTCTTCTTGCCGGTCT
CTCCCACCCCCTCACGTTGTGCCGCGCAAACCTGCTGGAAGTCACGCTCT
TTCCCTGTATCCTCTCACACTCGACACATGACCTCGTGCTAATTTCTTTT
TCGTCCCTCCCCCCCTCCGTACTCCCCCTCTAGGTATCCAAGGCCCGGAA
AGCACGCCCTACGCCGCTGGCCTCTTCCGTCTCGAACTCGAAGTTTCGGC
CCGATACCCTTTTGAGCCCCCAAAGGTTCGCTTTCTGACGCCCGTCTTCC
ATCCCAATGTCGATGACTGCGGTCGGATTTGCCTGGATAGCCTAAAGCCC
CAGCCCCAAGGTTCCTGGACTCCGTCATTGAGCATCCCAACACTTCTCAC
CACGCTTCGCCTTCTCCTCGCTCACCCAAATGCGGATGATGGGTTAGCAC
CTGAGCCGACTGCTCTTTACCAACGGGATTTGCGAGGGTTTGAAAGGAGG
GCAAGGGATCACACGGCGCAGCATGCGATGGGAGAAGAGGGTGAGACGAC
TTTGCCGCGAGGAGATATGAAGACGGGGGAGGGCAAGGACACAGACGAGG
ACAAAAATGAAGGCGTGGATGAGGACGAGGATAGTAAGATGCACGTGGCG
GGGGATGATAATGATTCCACTTCGTCGTCAAGTAATTTAAGTGATGGGCA
AGCGACGGATGGAGGGTCTCGCAGAAGCGCCACCGCTAGTCGTGCCAGTC
AAGCAACCCTCAGGAGTCACGGCCCGTCGTCGCCATCCTTTCCTGGACAG
CAGCAACAGCACCTGCAGCTGCAGCTCCACGAGGAGGAGGAAGAACGAGG
GTGGGACAGCGATGTGAGCATCTGTGGCGATGATGGTGGGGCATCATCAC
CCTCGTCTTCCTCCACCCTTTCCGATGACGACGATGACGAGAGCATTAGC
CCAAACAACTCTCTTGGTCACGGGCAAGGGAGCTGGAGGGGGGCGAACGG
GAGGGAGGGAGGGAAGAAAGGCGAAGCTTTTGTGACGAGCGCTGAGGGGA
TGCCGCCACGGAAGCGGGCCCGAGGCAGCGCGACTAGCAGTATTGCATCG
TAGGATCTGGTCTGTTAGAAGAGTAGATTTAGTGTATGTTTTGATGTGTG
CATGGTTAGATGTGGCCGTTTGATAGTTGGAATAGGTAGGGTAGGGGTTC
GATGGTTTAGAGAAAGAAAGGTAGGGTGGATGAAGTGAGTGCATGCGTCG
TGCGAGTGATAGACGCGAACAACATTACCGGAAAAGAGAGAAGAGGAAAG
AATCATGCTGGCTCAGTGTACAGGAGACATGAATGGTAGGGAAGTAAGCA
AGGGGTGGATATGCTGGTCAGAGATGCAGCCGAACATGCCAGTAAGCAGT
ATGCTTTGTGTTTTATGTGCTTGTTAGCGGCAAATTAGATCTGGTCAAAG
CGCCCGTAACTGTCTTCTTGGGGTTGACCCTGTGAGTGTAATAGTGTAAA
GTGAGGGCTATGAAAAAAAATGCAGGAAAAATTAAACACGTCAAGAACAG
CGGGAAAACATAGAAATCGGTTTGTCTTCAAAACTGACACTCAAATTGGA
CCACGTAGAGAGAAACAGGGAGTCAAGTCAGCATTTTGAATTTTTTGGCG
GTTTCCATC back to topCoding sequence (CDS) from alignment at chr4:718984..722442+ >NO04G02710.1 ID=NO04G02710.1|Name=NO04G02710.1|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at chr4:718984..722442+ (Nannochloropsis oceanica)
ATGGCGCGCTTCAGTCGGCTGGCCCGGGAGCTGGAGCTGCTGCGCACGGA
TCCACCGCCCGGCGTCGCGGCTTGGCTAGTGGACGAGGCCGACCTCTCGC
GCTTCCATGCCAGTATCCAAGGCCCGGAAAGCACGCCCTACGCCGCTGGC
CTCTTCCGTCTCGAACTCGAAGTTTCGGCCCGATACCCTTTTGAGCCCCC
AAAGGTTCGCTTTCTGACGCCCGTCTTCCATCCCAATGTCGATGACTGCG
GTCGGATTTGCCTGGATAGCCTAAAGCCCCAGCCCCAAGGTTCCTGGACT
CCGTCATTGAGCATCCCAACACTTCTCACCACGCTTCGCCTTCTCCTCGC
TCACCCAAATGCGGATGATGGGTTAGCACCTGAGCCGACTGCTCTTTACC
AACGGGATTTGCGAGGGTTTGAAAGGAGGGCAAGGGATCACACGGCGCAG
CATGCGATGGGAGAAGAGGGTGAGACGACTTTGCCGCGAGGAGATATGAA
GACGGGGGAGGGCAAGGACACAGACGAGGACAAAAATGAAGGCGTGGATG
AGGACGAGGATAGTAAGATGCACGTGGCGGGGGATGATAATGATTCCACT
TCGTCGTCAAGTAATTTAAGTGATGGGCAAGCGACGGATGGAGGGTCTCG
CAGAAGCGCCACCGCTAGTCGTGCCAGTCAAGCAACCCTCAGGAGTCACG
GCCCGTCGTCGCCATCCTTTCCTGGACAGCAGCAACAGCACCTGCAGCTG
CAGCTCCACGAGGAGGAGGAAGAACGAGGGTGGGACAGCGATGTGAGCAT
CTGTGGCGATGATGGTGGGGCATCATCACCCTCGTCTTCCTCCACCCTTT
CCGATGACGACGATGACGAGAGCATTAGCCCAAACAACTCTCTTGGTCAC
GGGCAAGGGAGCTGGAGGGGGGCGAACGGGAGGGAGGGAGGGAAGAAAGG
CGAAGCTTTTGTGACGAGCGCTGAGGGGATGCCGCCACGGAAGCGGGCCC
GAGGCAGCGCGACTAGCAGTATTGCATCGTAG back to top
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