NO04G02680.1, NO04G02680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02680.1
Unique NameNO04G02680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1320
Alignment locationchr4:712942..714415 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:712942..714415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02680.1 vs.
Match: XP_005856159.1 (aldo keto reductase, partial [Nannochloropsis gaditana CCMP526]; EKU20198.1 aldo keto reductase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 578.9 bits (1491), Expect = 1.300e-161
Identity = 279/376 (74.20%), Postives = 327/376 (86.97%), Query Frame = 0 
Query:   64 GPLYGGRIFDGFFNGASSTATSGSSSGRVQLGDLKVSPMGVGTWAWGNQFLWGYSPQKSDAALQETFDHVLNAGINWFDSADSYGTGRLEGRSEVLLGQFLKEHDYKRGGGKIRSSDDVYVATKIAPYPFRLGKESIKNAMKESSRRLDRGRAGVDIGQLHWAPPFGWQEKAYWAGLAEMKKEGSIKAIGLSNYGPKKLRQAAETFRKEHGVCLASNQVQFSLVSTLPVQSGLVEIAASEGVRLIAYSPLGLGVLTGRYSMEKQRLPEGPRRILFKELLPALAPVLATMDEIASERTRKNQGARGQRVTHSQIALNWCRSKGAVPIVGLKKLDQAKEATAALEWKLTSAETAALDAAVASMPRGTGQTVQNIFQTD 440
            GPL   R+FD  F G  S+  S     RV+LGDL+VSP+GVGTWAWGNQFLWGYSPQKSD++LQETFD+VL+ GINWFDSADSYGTGRLEGRSE+LLGQFL+EHDYK G   ++S++DV+VATKIAPYPFRLGK SIK AM+ SSRRLDRGRAGVDIGQLHWAPP GWQEKAYWAGLAE+K+EG IKAIGLSNYGPKKLR+AA+TF+ EHG+ LASNQVQ SLVS LP++SGL+E AA EGVRLIAYSPLGLG+LTGRY++E+Q+LPEGPRR+LF+ELLPAL PVL TMD+I +ERTRK  GA  + VT SQ+ALNWCR+KGA+PIVGLK L QA+EATAAL+W L++ E  ALD AV S+P+G G+TVQNIFQ++
Sbjct:   52 GPLKASRLFDNIFQGKKSS--SSGLGERVKLGDLRVSPLGVGTWAWGNQFLWGYSPQKSDSSLQETFDYVLSKGINWFDSADSYGTGRLEGRSEILLGQFLREHDYKLGSS-VKSAEDVFVATKIAPYPFRLGKGSIKAAMRASSRRLDRGRAGVDIGQLHWAPPLGWQEKAYWAGLAELKQEGDIKAIGLSNYGPKKLREAAQTFKSEHGISLASNQVQLSLVSPLPLRSGLIETAADEGVRLIAYSPLGLGILTGRYNLERQQLPEGPRRLLFRELLPALTPVLGTMDQIVNERTRKKYGAVSEPVTCSQVALNWCRAKGAIPIVGLKSLAQAREATAALDWCLSAGEVEALDRAVRSLPKGRGETVQNIFQSE 424
The following BLAST results are available for this feature:
BLAST of NO04G02680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856159.11.300e-16174.20aldo keto reductase, partial [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02680NO04G02680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02680.1NO04G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02680.1.cds1NO04G02680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02680.1.cds2NO04G02680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02680.1 ID=NO04G02680.1|Name=NO04G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ATGATAAATGTACAAAAGGAAGCTGAAGAAGAGGGCGCCTTTAGTCCACC
GCTTATGGCACCGAGGTTGTCCTCACGGCGGGGCAGCATTATGCGAGCTC
AAGCCGTCCTCGCTCTTGCCTGCAGCTGCAGCTGTACCCGTGCCTTTGTC
GGGCCACCACCACCACCACCGCCATTTGACTCGTCCGTGGGTCCGCTGTA
CGGAGGCCGCATTTTTGATGGTTTCTTCAACGGCGCGTCGTCCACCGCCA
CGAGCGGCAGCAGCAGCGGTCGCGTGCAGCTTGGCGACCTGAAAGTGAGT
CCAATGGGGGTCGGCACTTGGGCGTGGGGCAATCAGTTCCTCTGGGGCTA
CTCCCCACAAAAGTCGGATGCGGCCTTGCAAGAAACATTTGACCACGTCT
TGAATGCGGGCATCAATTGGTTTGACTCCGCTGACTCATATGGAACGGGG
AGACTGGAGGGGCGGAGTGAGGTCTTGCTAGGGCAATTTCTCAAGGAGCA
CGACTACAAGCGCGGTGGGGGAAAGATACGGAGTTCTGATGACGTATACG
TGGCTACTAAGATCGCGCCTTACCCCTTCCGACTAGGCAAGGAAAGTATC
AAAAACGCCATGAAAGAGAGCAGTCGAAGGCTTGACAGGGGAAGAGCGGG
TGTTGATATTGGACAGTTGCATTGGGCTCCCCCATTTGGTTGGCAAGAGA
AGGCATATTGGGCAGGCCTTGCTGAAATGAAAAAAGAGGGGAGTATCAAG
GCAATTGGCTTGAGTAATTATGGTCCAAAAAAGCTACGGCAGGCGGCGGA
GACCTTCAGGAAGGAACATGGCGTCTGTCTCGCCTCCAACCAAGTCCAAT
TCTCTCTTGTCTCGACATTGCCTGTGCAGAGCGGCTTGGTTGAAATAGCA
GCCAGCGAGGGAGTGCGCCTCATTGCTTATAGTCCTTTAGGATTGGGAGT
TTTGACGGGAAGGTATAGCATGGAGAAGCAGCGGTTACCGGAAGGGCCCC
GTCGCATTTTGTTCAAAGAGCTCCTTCCGGCGTTGGCCCCCGTCCTGGCC
ACCATGGACGAGATTGCGTCTGAACGAACCCGTAAAAACCAAGGTGCGCG
AGGGCAGCGTGTGACGCATTCACAAATTGCGTTAAACTGGTGTCGGTCGA
AAGGAGCAGTGCCAATCGTGGGGCTGAAAAAATTAGATCAAGCGAAAGAA
GCAACCGCTGCACTGGAGTGGAAATTGACCTCGGCAGAAACGGCAGCGTT
GGATGCGGCAGTCGCGAGCATGCCCCGGGGGACAGGACAAACAGTGCAAA
ATATATTCCAGACCGATTGA
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protein sequence of NO04G02680.1

>NO04G02680.1-protein ID=NO04G02680.1-protein|Name=NO04G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MINVQKEAEEEGAFSPPLMAPRLSSRRGSIMRAQAVLALACSCSCTRAFV
GPPPPPPPFDSSVGPLYGGRIFDGFFNGASSTATSGSSSGRVQLGDLKVS
PMGVGTWAWGNQFLWGYSPQKSDAALQETFDHVLNAGINWFDSADSYGTG
RLEGRSEVLLGQFLKEHDYKRGGGKIRSSDDVYVATKIAPYPFRLGKESI
KNAMKESSRRLDRGRAGVDIGQLHWAPPFGWQEKAYWAGLAEMKKEGSIK
AIGLSNYGPKKLRQAAETFRKEHGVCLASNQVQFSLVSTLPVQSGLVEIA
ASEGVRLIAYSPLGLGVLTGRYSMEKQRLPEGPRRILFKELLPALAPVLA
TMDEIASERTRKNQGARGQRVTHSQIALNWCRSKGAVPIVGLKKLDQAKE
ATAALEWKLTSAETAALDAAVASMPRGTGQTVQNIFQTD*
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mRNA from alignment at chr4:712942..714415+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02680.1 ID=NO04G02680.1|Name=NO04G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp|location=Sequence derived from alignment at chr4:712942..714415+ (Nannochloropsis oceanica)
ATGATAAATGTACAAAAGGAAGCTGAAGAAGAGGTAAATGTAAAGGAAAA
AGTATATGACAAATTGTTTTGGTCGGTGTCGAAGCCCGCGAAGCGGGGAG
GTTACGGTTTTGAGGTCCACCTCCACGCCACACAGTGCGACGCACAGAAA
GGTCTCGTGACAACGCATTCCCTCCACTTGAACACAGGGCGCCTTTAGTC
CACCGCTTATGGCACCGAGGTTGTCCTCACGGCGGGGCAGCATTATGCGA
GCTCAAGCCGTCCTCGCTCTTGCCTGCAGCTGCAGCTGTACCCGTGCCTT
TGTCGGGCCACCACCACCACCACCGCCATTTGACTCGTCCGTGGGTCCGC
TGTACGGAGGCCGCATTTTTGATGGTTTCTTCAACGGCGCGTCGTCCACC
GCCACGAGCGGCAGCAGCAGCGGTCGCGTGCAGCTTGGCGACCTGAAAGT
GAGTCCAATGGGGGTCGGCACTTGGGCGTGGGGCAATCAGTTCCTCTGGG
GCTACTCCCCACAAAAGTCGGATGCGGCCTTGCAAGAAACATTTGACCAC
GTCTTGAATGCGGGCATCAATTGGTTTGACTCCGCTGACTCATATGGAAC
GGGGAGACTGGAGGGGCGGAGTGAGGTCTTGCTAGGGCAATTTCTCAAGG
AGCACGACTACAAGCGCGGTGGGGGAAAGATACGGAGTTCTGATGACGTA
TACGTGGCTACTAAGATCGCGCCTTACCCCTTCCGACTAGGCAAGGAAAG
TATCAAAAACGCCATGAAAGAGAGCAGTCGAAGGCTTGACAGGGGAAGAG
CGGGTGTTGATATTGGACAGTTGCATTGGGCTCCCCCATTTGGTTGGCAA
GAGAAGGCATATTGGGCAGGCCTTGCTGAAATGAAAAAAGAGGGGAGTAT
CAAGGCAATTGGCTTGAGTAATTATGGTCCAAAAAAGCTACGGCAGGCGG
CGGAGACCTTCAGGAAGGAACATGGCGTCTGTCTCGCCTCCAACCAAGTC
CAATTCTCTCTTGTCTCGACATTGCCTGTGCAGAGCGGCTTGGTTGAAAT
AGCAGCCAGCGAGGGAGTGCGCCTCATTGCTTATAGTCCTTTAGGATTGG
GAGTTTTGACGGGAAGGTATAGCATGGAGAAGCAGCGGTTACCGGAAGGG
CCCCGTCGCATTTTGTTCAAAGAGCTCCTTCCGGCGTTGGCCCCCGTCCT
GGCCACCATGGACGAGATTGCGTCTGAACGAACCCGTAAAAACCAAGGTG
CGCGAGGGCAGCGTGTGACGCATTCACAAATTGCGTTAAACTGGTGTCGG
TCGAAAGGAGCAGTGCCAATCGTGGGGCTGAAAAAATTAGATCAAGCGAA
AGAAGCAACCGCTGCACTGGAGTGGAAATTGACCTCGGCAGAAACGGCAG
CGTTGGATGCGGCAGTCGCGAGCATGCCCCGGGGGACAGGACAAACAGTG
CAAAATATATTCCAGACCGATTGA
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Coding sequence (CDS) from alignment at chr4:712942..714415+

>NO04G02680.1 ID=NO04G02680.1|Name=NO04G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr4:712942..714415+ (Nannochloropsis oceanica)
ATGATAAATGTACAAAAGGAAGCTGAAGAAGAGGGCGCCTTTAGTCCACC
GCTTATGGCACCGAGGTTGTCCTCACGGCGGGGCAGCATTATGCGAGCTC
AAGCCGTCCTCGCTCTTGCCTGCAGCTGCAGCTGTACCCGTGCCTTTGTC
GGGCCACCACCACCACCACCGCCATTTGACTCGTCCGTGGGTCCGCTGTA
CGGAGGCCGCATTTTTGATGGTTTCTTCAACGGCGCGTCGTCCACCGCCA
CGAGCGGCAGCAGCAGCGGTCGCGTGCAGCTTGGCGACCTGAAAGTGAGT
CCAATGGGGGTCGGCACTTGGGCGTGGGGCAATCAGTTCCTCTGGGGCTA
CTCCCCACAAAAGTCGGATGCGGCCTTGCAAGAAACATTTGACCACGTCT
TGAATGCGGGCATCAATTGGTTTGACTCCGCTGACTCATATGGAACGGGG
AGACTGGAGGGGCGGAGTGAGGTCTTGCTAGGGCAATTTCTCAAGGAGCA
CGACTACAAGCGCGGTGGGGGAAAGATACGGAGTTCTGATGACGTATACG
TGGCTACTAAGATCGCGCCTTACCCCTTCCGACTAGGCAAGGAAAGTATC
AAAAACGCCATGAAAGAGAGCAGTCGAAGGCTTGACAGGGGAAGAGCGGG
TGTTGATATTGGACAGTTGCATTGGGCTCCCCCATTTGGTTGGCAAGAGA
AGGCATATTGGGCAGGCCTTGCTGAAATGAAAAAAGAGGGGAGTATCAAG
GCAATTGGCTTGAGTAATTATGGTCCAAAAAAGCTACGGCAGGCGGCGGA
GACCTTCAGGAAGGAACATGGCGTCTGTCTCGCCTCCAACCAAGTCCAAT
TCTCTCTTGTCTCGACATTGCCTGTGCAGAGCGGCTTGGTTGAAATAGCA
GCCAGCGAGGGAGTGCGCCTCATTGCTTATAGTCCTTTAGGATTGGGAGT
TTTGACGGGAAGGTATAGCATGGAGAAGCAGCGGTTACCGGAAGGGCCCC
GTCGCATTTTGTTCAAAGAGCTCCTTCCGGCGTTGGCCCCCGTCCTGGCC
ACCATGGACGAGATTGCGTCTGAACGAACCCGTAAAAACCAAGGTGCGCG
AGGGCAGCGTGTGACGCATTCACAAATTGCGTTAAACTGGTGTCGGTCGA
AAGGAGCAGTGCCAATCGTGGGGCTGAAAAAATTAGATCAAGCGAAAGAA
GCAACCGCTGCACTGGAGTGGAAATTGACCTCGGCAGAAACGGCAGCGTT
GGATGCGGCAGTCGCGAGCATGCCCCGGGGGACAGGACAAACAGTGCAAA
ATATATTCCAGACCGATTGA
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Synonyms
Publications