NO04G02060.1, NO04G02060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02060.1
Unique NameNO04G02060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1929
Alignment locationchr4:594350..596396 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:594350..596396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02060.1 vs.
Match: EWM28527.1 (Transcription factor IIS [Nannochloropsis gaditana])

HSP 1 Score: 480.7 bits (1236), Expect = 7.000e-132
Identity = 330/663 (49.77%), Postives = 410/663 (61.84%), Query Frame = 0 
Query:    5 LVRLTRDPVRQEVLEAAHPALDNWKAENAKKCWEP-----------VSGSSNSSK--------KATMQRGLIETFRRIVHLEGTGVYAQEKTKRDLFDTFVSVESRTDHRPALPSPGSSTAAVAVGGAAATSQKWSIVDYLGWNPLAGPPPESLSDPFDPEGRKRLSKHRVLALGLELMLLVELSGLVRDHV-GQQQKRRYQQENEKEEVGEEEVFGFYEKEEGDKTEALKGGG-------DLERMRRQHRALSAECRVVHVLKWLPTVRPFLGPTLVDTERYRDQVLLATSVVGALSRGGELRIPALLLPHEYFFLREHLAVQLLNRDVLLVGKSIDALRVLGSHDENPMMRAGMSFLLGAQARAGNWLSSTFRAEGNKLQQQQQQQPQQQEQPQQQEQQHQQEQEQLQEIESTLAATRALLVREFNGFGPLPLEVVDMLLAWQKEDADPLPPTGSSNSSGTNRGSVELPLKEEDGSVVFLQPDGKMDSRVKLLGRVVTKFKKEHKKKHAGAAVAVAADDEGAAVTATAAASTAAALLDPPTLLPSSSTSSLGPIGSGGGRRNGENGGEGGGGGEPPVLSKADQAQAARIVKLGKEIERAKEEREWGLVLEGLRGVEQERMTLVMLSATSIGRVVNKLKKVEDGAVADLGRKLVKEWKALVE 641
            +VRLTRDPVRQEVLEAAH  L+ WK ENA++ W P            +GS    +        KAT Q+ LI   RRI  LE TG+YAQE++KR L   FVSV   ++   + P P            AA    WSI DYLGWNPL  PPP SL DPFDP G  RLS+ RVLAL +E M+++ELSGLV D   G++ +RR  +        E E     E+EE +   A++ GG        +E    Q  AL+ E R+VHVLKWLP VRP+ GP  V+   YRDQV LATSVV ALSRGGELRIPALLLPHEYFFLREHLAVQLL RDVL VG++IDALRVLGSH+ENPM+RAGM++L+  QA+AGNW ++T  A   + + +  +      +   +++           +  TLAATRALLVREFNGFGPLPLEV+D+LLAWQKEDADPLP               +LP + EDGS VFL PDG  D RVK L R+VTK KK+ KK+ AGAA   AA          +AAST A ++     L  + T+   P+ + G +       +     E  VLS+ADQA  AR+ +LG++IE AK +++W  V E L  +E E M+L +L+ATSIGRVVNKLKK ED  VA LG+ LVK+WKALVE
Sbjct:  124 MVRLTRDPVRQEVLEAAHLPLEKWKVENAQEQWGPSQVRQGNGSGGAAGSLEGGRCAHQEDIGKATTQQTLIVAVRRIFSLERTGMYAQEESKRALLKAFVSVREGSERASSSPVP-----------EAAHRSTWSIEDYLGWNPLHAPPPASLRDPFDPTG-PRLSQQRVLALSVEWMMVLELSGLVADRSEGEEGRRRGGRGRGTGGRAEPE-----EREEDNGAVAVEDGGAASPKAATMEESEPQTAALAEEGRLVHVLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRF----------VAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPG--------------DLPPQGEDGSSVFLLPDGTWDRRVKDLERIVTKIKKQFKKRQAGAAAVRAAS------ATPSAASTPAPMVPASGALRMADTAH--PLAAQGSQEAAPL--DERARMEAAVLSEADQAGVARVNELGRQIEGAKAKQDWTRVREALLTLEAEPMSLTILTATSIGRVVNKLKKAEDAGVALLGKGLVKKWKALVE 735
The following BLAST results are available for this feature:
BLAST of NO04G02060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28527.17.000e-13249.77Transcription factor IIS [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02060NO04G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02060.1NO04G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02060.1.cds1NO04G02060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02060.1.cds2NO04G02060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02060.1 ID=NO04G02060.1|Name=NO04G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp
ATGGTGGGACAGCTAGTGCGGCTGACGCGAGACCCTGTGCGACAGGAAGT
CCTCGAGGCAGCACACCCAGCATTGGATAACTGGAAAGCTGAAAATGCCA
AAAAGTGCTGGGAGCCAGTCAGTGGCAGCAGCAACAGCAGTAAGAAGGCA
ACGATGCAACGTGGTTTAATCGAAACATTCCGTCGAATCGTCCATCTCGA
AGGCACAGGGGTGTACGCCCAGGAAAAAACAAAGCGGGATCTTTTTGATA
CATTTGTCAGCGTAGAAAGTCGAACAGATCACCGTCCAGCCCTCCCTTCC
CCTGGCTCCTCCACAGCTGCTGTTGCTGTTGGTGGTGCCGCTGCCACATC
CCAGAAGTGGAGTATTGTTGATTACTTGGGGTGGAATCCTTTGGCTGGGC
CACCGCCTGAGTCACTGTCCGATCCGTTTGACCCTGAAGGGAGAAAGAGA
TTGTCAAAGCATCGTGTGCTGGCGTTGGGCCTTGAATTAATGTTGCTTGT
GGAGCTGAGCGGTCTAGTCAGAGATCATGTTGGGCAGCAGCAGAAGCGCC
GGTATCAGCAGGAGAATGAGAAGGAAGAGGTTGGAGAGGAGGAAGTTTTC
GGGTTCTATGAGAAGGAGGAGGGCGACAAGACGGAGGCGCTAAAGGGAGG
TGGGGATCTGGAGAGGATGCGCCGGCAGCATCGGGCTTTGAGTGCGGAAT
GTAGGGTTGTCCATGTTTTGAAATGGTTACCGACTGTTCGGCCTTTCCTG
GGGCCGACATTGGTGGATACGGAGAGATATAGGGATCAGGTATTATTGGC
TACGAGTGTGGTGGGTGCTCTGAGTAGGGGTGGGGAGCTGCGGATCCCGG
CGTTGCTCTTACCGCATGAGTACTTCTTTTTGAGGGAGCACTTGGCGGTG
CAGTTACTGAACAGAGACGTTTTGCTGGTAGGAAAGTCAATCGACGCGTT
GAGAGTGCTGGGCTCTCATGACGAAAACCCCATGATGCGAGCCGGGATGA
GCTTTTTACTCGGCGCCCAGGCACGGGCGGGAAACTGGCTTAGCTCCACT
TTTCGAGCCGAGGGGAATAAACTGCAGCAGCAGCAGCAGCAACAACCACA
ACAACAAGAACAACCACAACAACAAGAACAACAACATCAACAAGAACAGG
AACAACTACAGGAAATAGAGTCGACCTTGGCGGCGACCCGGGCGTTGCTT
GTGAGGGAATTTAACGGATTCGGCCCCTTGCCGTTGGAGGTGGTGGACAT
GCTGCTGGCCTGGCAGAAGGAGGATGCTGATCCTCTCCCTCCGACGGGCA
GCAGCAACAGCAGCGGCACCAATAGGGGCAGTGTGGAGCTGCCTTTGAAG
GAGGAGGATGGGAGTGTTGTTTTCCTCCAACCGGATGGAAAGATGGATTC
GCGGGTCAAACTGTTGGGGAGGGTGGTGACAAAATTTAAAAAGGAGCATA
AGAAGAAACATGCGGGTGCCGCCGTCGCTGTTGCTGCTGATGATGAGGGT
GCGGCTGTGACTGCGACTGCGGCTGCGTCGACCGCGGCAGCTCTGCTTGA
CCCTCCTACGTTGTTGCCGTCGTCATCGACCTCGTCTTTGGGGCCTATAG
GTAGTGGAGGAGGAAGAAGAAATGGAGAAAATGGGGGGGAAGGAGGAGGA
GGAGGGGAGCCTCCTGTGCTGTCAAAAGCAGATCAGGCACAAGCAGCACG
AATTGTAAAATTGGGGAAGGAAATTGAGCGAGCGAAGGAGGAGAGGGAGT
GGGGGTTGGTTTTGGAGGGTTTAAGGGGGGTGGAGCAGGAAAGGATGACG
CTGGTGATGTTGAGTGCTACGTCGATAGGGCGTGTGGTGAATAAGCTGAA
GAAGGTGGAGGATGGGGCAGTGGCAGACCTGGGGAGGAAACTCGTGAAGG
AGTGGAAGGCACTCGTGGAAGATAAGTAG
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protein sequence of NO04G02060.1

>NO04G02060.1-protein ID=NO04G02060.1-protein|Name=NO04G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MVGQLVRLTRDPVRQEVLEAAHPALDNWKAENAKKCWEPVSGSSNSSKKA
TMQRGLIETFRRIVHLEGTGVYAQEKTKRDLFDTFVSVESRTDHRPALPS
PGSSTAAVAVGGAAATSQKWSIVDYLGWNPLAGPPPESLSDPFDPEGRKR
LSKHRVLALGLELMLLVELSGLVRDHVGQQQKRRYQQENEKEEVGEEEVF
GFYEKEEGDKTEALKGGGDLERMRRQHRALSAECRVVHVLKWLPTVRPFL
GPTLVDTERYRDQVLLATSVVGALSRGGELRIPALLLPHEYFFLREHLAV
QLLNRDVLLVGKSIDALRVLGSHDENPMMRAGMSFLLGAQARAGNWLSST
FRAEGNKLQQQQQQQPQQQEQPQQQEQQHQQEQEQLQEIESTLAATRALL
VREFNGFGPLPLEVVDMLLAWQKEDADPLPPTGSSNSSGTNRGSVELPLK
EEDGSVVFLQPDGKMDSRVKLLGRVVTKFKKEHKKKHAGAAVAVAADDEG
AAVTATAAASTAAALLDPPTLLPSSSTSSLGPIGSGGGRRNGENGGEGGG
GGEPPVLSKADQAQAARIVKLGKEIERAKEEREWGLVLEGLRGVEQERMT
LVMLSATSIGRVVNKLKKVEDGAVADLGRKLVKEWKALVEDK*
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mRNA from alignment at chr4:594350..596396+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02060.1 ID=NO04G02060.1|Name=NO04G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at chr4:594350..596396+ (Nannochloropsis oceanica)
ATGGTGGGACAGCTAGTGCGGCTGACGCGAGACCCTGTGCGACAGGAAGT
CCTCGAGGCAGCACACCCAGCATTGGATAACTGGAAAGCTGAAAATGCCA
AAAAGTGCTGGGAGCCAGTCAGTGGCAGCAGCAACAGCAGTAAGAAGGCA
ACGATGCAACGTGGTTTAATCGAAACATTCCGTCGAATCGTCCATCTCGA
AGGCACAGGGGTGTACGCCCAGGAAAAAACAAAGCGGGATCTTTTTGATA
CATTTGTCAGCGTAGAAAGTCGAACAGATCACCGTCCAGCCCTCCCTTCC
CCTGGCTCCTCCACAGCTGCTGTTGCTGTTGGTGGTGCCGCTGCCACATC
CCAGAAGTGGAGTATTGTTGATTACTTGGGGTGGAATCCTTTGGCTGGGC
CACCGCCTGAGTCACTGTCCGATCCGTTTGACCCTGAAGGGAGAAAGAGA
TTGTCAAAGCATCGTGTGCTGGCGTTGGGCCTTGAATTAATGTTGCTTGT
GGAGCTGAGCGGTCTAGTCAGAGATCATGTTGGGCAGCAGCAGAAGCGCC
GGTATCAGCAGGAGAATGAGAAGGAAGAGGTTGGAGAGGAGGAAGTTTTC
GGGTTCTATGAGAAGGAGGAGGGCGACAAGACGGAGGCGCTAAAGGGAGG
TGGGGATCTGGAGAGGATGCGCCGGCAGCATCGGGCTTTGAGTGCGGAAT
GTAGGGTTGTCCATGTTTTGAAATGGTTACCGACTGTTCGGCCTTTCCTG
GGGCCGACATTGGTGGATACGGAGAGATATAGGGATCAGGTATTATTGGC
TACGAGTGTGGTGGGTGCTCTGAGTAGGGGTGGGGAGCTGCGGATCCCGG
CGTTGCTCTTACCGCATGAGTACTTCTTTTTGAGGGAGCACTTGGCGGTG
CAGTTACTGAACAGAGGTAGTATCGGAGGGCATGGAGGGACGGACAAAGG
GCGAAAAGAGGGGTGCTATTGCAATTTTTCTATCTATTCAGCCTCGGTAT
GTATTTCTTCCCCATATCGCACAATTTTCCACAGACGTTTTGCTGGTAGG
AAAGTCAATCGACGCGTTGAGAGTGCTGGGCTCTCATGACGAAAACCCCA
TGATGCGAGCCGGGATGAGCTTTTTACTCGGCGCCCAGGCACGGGCGGGA
AACTGGCTTAGCTCCACTTTTCGAGCCGAGGGGAATAAACTGCAGCAGCA
GCAGCAGCAACAACCACAACAACAAGAACAACCACAACAACAAGAACAAC
AACATCAACAAGAACAGGAACAACTACAGGAAATAGAGTCGACCTTGGCG
GCGACCCGGGCGTTGCTTGTGAGGGAATTTAACGGATTCGGCCCCTTGCC
GTTGGAGGTGGTGGACATGCTGCTGGCCTGGCAGAAGGAGGATGCTGATC
CTCTCCCTCCGACGGGCAGCAGCAACAGCAGCGGCACCAATAGGGGCAGT
GTGGAGCTGCCTTTGAAGGAGGAGGATGGGAGTGTTGTTTTCCTCCAACC
GGATGGAAAGATGGATTCGCGGGTCAAACTGTTGGGGAGGGTGGTGACAA
AATTTAAAAAGGAGCATAAGAAGAAACATGCGGGTGCCGCCGTCGCTGTT
GCTGCTGATGATGAGGGTGCGGCTGTGACTGCGACTGCGGCTGCGTCGAC
CGCGGCAGCTCTGCTTGACCCTCCTACGTTGTTGCCGTCGTCATCGACCT
CGTCTTTGGGGCCTATAGGTAGTGGAGGAGGAAGAAGAAATGGAGAAAAT
GGGGGGGAAGGAGGAGGAGGAGGGGAGCCTCCTGTGCTGTCAAAAGCAGA
TCAGGCACAAGCAGCACGAATTGTAAAATTGGGGAAGGAAATTGAGCGAG
CGAAGGAGGAGAGGGAGTGGGGGTTGGTTTTGGAGGGTTTAAGGGGGGTG
GAGCAGGAAAGGATGACGCTGGTGATGTTGAGTGCTACGTCGATAGGGCG
TGTGGTGAATAAGCTGAAGAAGGTGGAGGATGGGGCAGTGGCAGACCTGG
GGAGGAAACTCGTGAAGGAGTGGAAGGCACTCGTGGAAGATAAGTAG
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Coding sequence (CDS) from alignment at chr4:594350..596396+

>NO04G02060.1 ID=NO04G02060.1|Name=NO04G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=1929bp|location=Sequence derived from alignment at chr4:594350..596396+ (Nannochloropsis oceanica)
ATGGTGGGACAGCTAGTGCGGCTGACGCGAGACCCTGTGCGACAGGAAGT
CCTCGAGGCAGCACACCCAGCATTGGATAACTGGAAAGCTGAAAATGCCA
AAAAGTGCTGGGAGCCAGTCAGTGGCAGCAGCAACAGCAGTAAGAAGGCA
ACGATGCAACGTGGTTTAATCGAAACATTCCGTCGAATCGTCCATCTCGA
AGGCACAGGGGTGTACGCCCAGGAAAAAACAAAGCGGGATCTTTTTGATA
CATTTGTCAGCGTAGAAAGTCGAACAGATCACCGTCCAGCCCTCCCTTCC
CCTGGCTCCTCCACAGCTGCTGTTGCTGTTGGTGGTGCCGCTGCCACATC
CCAGAAGTGGAGTATTGTTGATTACTTGGGGTGGAATCCTTTGGCTGGGC
CACCGCCTGAGTCACTGTCCGATCCGTTTGACCCTGAAGGGAGAAAGAGA
TTGTCAAAGCATCGTGTGCTGGCGTTGGGCCTTGAATTAATGTTGCTTGT
GGAGCTGAGCGGTCTAGTCAGAGATCATGTTGGGCAGCAGCAGAAGCGCC
GGTATCAGCAGGAGAATGAGAAGGAAGAGGTTGGAGAGGAGGAAGTTTTC
GGGTTCTATGAGAAGGAGGAGGGCGACAAGACGGAGGCGCTAAAGGGAGG
TGGGGATCTGGAGAGGATGCGCCGGCAGCATCGGGCTTTGAGTGCGGAAT
GTAGGGTTGTCCATGTTTTGAAATGGTTACCGACTGTTCGGCCTTTCCTG
GGGCCGACATTGGTGGATACGGAGAGATATAGGGATCAGGTATTATTGGC
TACGAGTGTGGTGGGTGCTCTGAGTAGGGGTGGGGAGCTGCGGATCCCGG
CGTTGCTCTTACCGCATGAGTACTTCTTTTTGAGGGAGCACTTGGCGGTG
CAGTTACTGAACAGAGACGTTTTGCTGGTAGGAAAGTCAATCGACGCGTT
GAGAGTGCTGGGCTCTCATGACGAAAACCCCATGATGCGAGCCGGGATGA
GCTTTTTACTCGGCGCCCAGGCACGGGCGGGAAACTGGCTTAGCTCCACT
TTTCGAGCCGAGGGGAATAAACTGCAGCAGCAGCAGCAGCAACAACCACA
ACAACAAGAACAACCACAACAACAAGAACAACAACATCAACAAGAACAGG
AACAACTACAGGAAATAGAGTCGACCTTGGCGGCGACCCGGGCGTTGCTT
GTGAGGGAATTTAACGGATTCGGCCCCTTGCCGTTGGAGGTGGTGGACAT
GCTGCTGGCCTGGCAGAAGGAGGATGCTGATCCTCTCCCTCCGACGGGCA
GCAGCAACAGCAGCGGCACCAATAGGGGCAGTGTGGAGCTGCCTTTGAAG
GAGGAGGATGGGAGTGTTGTTTTCCTCCAACCGGATGGAAAGATGGATTC
GCGGGTCAAACTGTTGGGGAGGGTGGTGACAAAATTTAAAAAGGAGCATA
AGAAGAAACATGCGGGTGCCGCCGTCGCTGTTGCTGCTGATGATGAGGGT
GCGGCTGTGACTGCGACTGCGGCTGCGTCGACCGCGGCAGCTCTGCTTGA
CCCTCCTACGTTGTTGCCGTCGTCATCGACCTCGTCTTTGGGGCCTATAG
GTAGTGGAGGAGGAAGAAGAAATGGAGAAAATGGGGGGGAAGGAGGAGGA
GGAGGGGAGCCTCCTGTGCTGTCAAAAGCAGATCAGGCACAAGCAGCACG
AATTGTAAAATTGGGGAAGGAAATTGAGCGAGCGAAGGAGGAGAGGGAGT
GGGGGTTGGTTTTGGAGGGTTTAAGGGGGGTGGAGCAGGAAAGGATGACG
CTGGTGATGTTGAGTGCTACGTCGATAGGGCGTGTGGTGAATAAGCTGAA
GAAGGTGGAGGATGGGGCAGTGGCAGACCTGGGGAGGAAACTCGTGAAGG
AGTGGAAGGCACTCGTGGAAGATAAGTAG
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Synonyms
Publications