NO04G01990.1, NO04G01990.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G01990.1
Unique Name	NO04G01990.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2199
Alignment location	chr4:580258..582456 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:580258..582456 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G01990.1 vs.
Match: EWM28604.1 (dna-directed rna polymerase iii subunit rpc3 [Nannochloropsis gaditana])

HSP 1 Score: 665.2 bits (1715), Expect = 2.300e-187
Identity = 413/761 (54.27%), Postives = 506/761 (66.49%), Query Frame = 0

Query:    1 MSVSPLYGGASSSNQQYKLALNILNEHFGSVVRDVGAYVLRRGRCTLAEARRDIVDEEGHRHKLSQIKDALVVLIQHNLLIVAMPTAEEIQRVHPRVFFYYQMDLDGVTVRLRFPKFLLRARQLYGEEGQAVLESVMLHGRLPFSQLHSQVESTMQTRRQAAIAAGLVNNSEDKGEDNVNKPNSGNNMSSNSSSSSNRKAYLMTGAKLQALIHKMITSHYLVRVVPFDLLTPSPEALTSAGAAAAIRGSRAAANKAAAAAAADATARASEALAIKKRGRRLDTQDESQDDEAIPVELAMMLPPEEKGGGKANDSTKKRMRTKGYGAEEGEGREEEEEEGEEEEKEDQEEGDVGARKSAAAAARNQNKKAKRRIDEEEEH-----EDDGEGAHIRKRDKSMGRAAAAEAAK------------------------RSRLQEIVEEDEDIRQTLSRSATANAAIATGLGQGEFSLSSLLAAGDSLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAELTRKVSLPPSVTVKMYMDVLQNDPVRVVGFEGGGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            M VSP  GG SS+NQQYKLALNILNEHFG VV+D+G+Y+LRRGRCTLAE  RD  +  G+ HKL  IK+ALV+L+QHNLL+VAMPT++E+ R H +   YYQMDLD VT+RLRFPKFLLRARQL+GE GQA +E+VM HGRLP S++ +QV  + + R   A  A         G+    +  SG    +++S              ++ L+ KMI  HYLVRV+P DL+TPSP+ALTS GAAAA RGSRAAA+KAAA+A     ++ +E  A KKRGR+       + DE + +E+   L                       GAEEG         GE         G VG   S  A      K+ KRR   +E H     +++G G H     K +G   A E  +                        RS L+ IVEEDE+            A   T +G GE SL+  + AGD +LW+VG+EQFHRDLRHV C++FVRQKVNTTAESLVR+IL+HSLPLE    V   RS+ LSL EL+ +V LPP+VTVKMY++VLQNDPV++V  EG  +  VY V LG I E+LRQRT+HSI+RERY++D+K+ DGDRNARICRVLL+KK+LD QQ+SE+AMMSLRETRERLY MY D ++T QEIPRRADHHPNQTF+LWTFNM+QV EE+ QRMYKGALNLRLRRQKET+EK+DLLANK+NIRD+VEAAHFDQLT  LDRLDQALENLD TLMLFTVF
Sbjct:    1 MVVSPHPGGVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEIWRDSDNRNGNLHKLGLIKEALVILLQHNLLVVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGD---GEAGSGATACADAS------------VDVEDLVRKMILEHYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVL---SKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSL-----------------------GAEEGVAAPYVSSGGE---------GPVGGPLSILA-----RKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEE------------ADGKTWVG-GEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRVQLPPNVTVKMYLEVLQNDPVQIVDREGTATD-VYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692

The following BLAST results are available for this feature:

BLAST of NO04G01990.1 vs.

BLAST of NO04G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28604.1	2.300e-187	54.27	dna-directed rna polymerase iii subunit rpc3 [Nann...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G01990	NO04G01990	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G01990.1	NO04G01990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G01990.1.cds1	NO04G01990.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:580258..582456+
coding sequence from alignment at chr4:580258..582456+

mRNA sequence

>NO04G01990.1 ID=NO04G01990.1|Name=NO04G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp
ATGTCCGTTTCACCACTCTACGGCGGAGCCTCCTCCTCAAACCAGCAGTA
TAAGCTGGCCCTGAATATTTTAAACGAGCATTTTGGTTCCGTCGTCCGCG
ATGTAGGCGCCTACGTCTTGCGTCGCGGCCGATGTACCCTAGCCGAGGCC
CGACGGGACATCGTGGACGAAGAGGGACACCGCCACAAGCTCAGCCAAAT
CAAAGACGCCCTCGTCGTTCTGATACAACACAATCTCCTCATTGTCGCTA
TGCCTACAGCTGAGGAAATTCAACGCGTGCATCCCCGCGTCTTTTTCTAC
TACCAGATGGACCTTGACGGGGTGACCGTCCGTCTACGCTTCCCCAAGTT
CCTCCTCCGCGCCCGACAGCTTTACGGTGAAGAGGGACAGGCAGTGCTAG
AAAGTGTCATGCTGCATGGGCGTTTGCCCTTCTCCCAGCTCCATTCCCAG
GTGGAATCCACAATGCAAACACGTCGACAAGCTGCCATTGCTGCAGGCCT
AGTCAATAATAGTGAGGACAAGGGCGAGGACAACGTCAATAAGCCCAACA
GCGGCAACAACATGAGCAGCAACAGCAGCAGTAGCAGCAACAGAAAAGCT
TACCTAATGACCGGTGCCAAGCTCCAAGCACTAATCCACAAAATGATCAC
CTCTCACTACCTCGTCCGTGTCGTTCCCTTCGATCTTCTCACGCCCTCCC
CTGAAGCTCTGACCAGCGCTGGTGCCGCAGCTGCTATCCGTGGCTCCCGC
GCAGCTGCCAATAAAGCAGCAGCAGCTGCAGCGGCTGACGCGACCGCGCG
AGCATCGGAGGCGTTGGCGATTAAGAAAAGGGGCAGGAGACTTGATACTC
AAGATGAGAGTCAGGATGACGAAGCGATTCCTGTGGAGCTAGCCATGATG
CTGCCCCCGGAGGAGAAGGGGGGAGGAAAAGCGAACGATAGCACGAAAAA
GAGGATGAGGACGAAAGGCTACGGGGCCGAGGAGGGGGAGGGGAGGGAGG
AGGAAGAGGAGGAAGGGGAGGAGGAAGAGAAGGAAGATCAGGAGGAGGGA
GATGTTGGTGCTCGTAAATCGGCCGCTGCAGCTGCGCGAAATCAGAATAA
GAAAGCGAAAAGGCGTATAGACGAAGAGGAGGAGCACGAAGACGACGGGG
AGGGTGCACATATTAGGAAGAGAGATAAGTCAATGGGAAGAGCAGCGGCG
GCAGAAGCAGCAAAGAGAAGTCGGCTGCAAGAGATTGTGGAGGAAGACGA
GGACATACGACAGACCCTCAGCAGGTCCGCCACGGCCAATGCCGCCATCG
CTACCGGCCTAGGGCAAGGTGAGTTTTCTCTTTCCTCGTTGCTAGCAGCG
GGGGATAGTCTGCTCTGGAAGGTGGGCTTGGAACAGTTCCATCGGGACTT
GCGGCATGTGTGTTGTGTGAAGTTTGTCAGGCAGAAGGTGAACACCACGG
CCGAGTCCCTTGTGCGGTCCATCTTAGAGCACAGCTTGCCATTGGAGCAT
GGAGATGTGGTGAATTGTGAACGGTCCCGGGGTCTAAGCTTGGCGGAGTT
GACGAGGAAAGTGTCGTTGCCGCCCAGTGTGACGGTGAAGATGTACATGG
ACGTGCTGCAAAATGACCCCGTGCGGGTCGTGGGGTTTGAGGGAGGGGGA
AGCGGAGGGGTCTACAGTGTGTTTTTGGGAAATATCTGCGAGAATTTGAG
ACAGAGGACAATGCATAGTATTGTGAGGGAAAGATATAGCAGTGACGCGA
AGAGTAGTGATGGGGATCGGAACGCGCGGATTTGCAGGGTATTGTTGGAG
AAGAAATTCTTGGATCAACAGCAACTAAGTGAGATGGCCATGATGAGTTT
GCGGGAGACGAGGGAAAGGTTATATTACATGTATATGGACGAGATGGTGA
CTTTCCAGGAAATTCCTCGCAGAGCGGATCATCACCCGAACCAGACGTTT
TTCCTGTGGACTTTCAACATGAAGCAGGTCGGGGAGGAAGTCGTGCAAAG
GATGTACAAAGGGGCATTAAATTTACGCTTGAGACGACAGAAGGAAACTG
AGGAGAAGAAAGATTTGTTGGCCAATAAGGACAATATCAGGGATGAGGTA
GAGGCTGCGCATTTTGACCAGTTGACCATAGCGCTGGATCGACTCGACCA
GGCATTAGAGAATCTAGATGAGACCCTCATGTTGTTTACGGTGTTTTAG

protein sequence of NO04G01990.1

>NO04G01990.1-protein ID=NO04G01990.1-protein|Name=NO04G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=733bp
MSVSPLYGGASSSNQQYKLALNILNEHFGSVVRDVGAYVLRRGRCTLAEA
RRDIVDEEGHRHKLSQIKDALVVLIQHNLLIVAMPTAEEIQRVHPRVFFY
YQMDLDGVTVRLRFPKFLLRARQLYGEEGQAVLESVMLHGRLPFSQLHSQ
VESTMQTRRQAAIAAGLVNNSEDKGEDNVNKPNSGNNMSSNSSSSSNRKA
YLMTGAKLQALIHKMITSHYLVRVVPFDLLTPSPEALTSAGAAAAIRGSR
AAANKAAAAAAADATARASEALAIKKRGRRLDTQDESQDDEAIPVELAMM
LPPEEKGGGKANDSTKKRMRTKGYGAEEGEGREEEEEEGEEEEKEDQEEG
DVGARKSAAAAARNQNKKAKRRIDEEEEHEDDGEGAHIRKRDKSMGRAAA
AEAAKRSRLQEIVEEDEDIRQTLSRSATANAAIATGLGQGEFSLSSLLAA
GDSLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEH
GDVVNCERSRGLSLAELTRKVSLPPSVTVKMYMDVLQNDPVRVVGFEGGG
SGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLE
KKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTF
FLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEV
EAAHFDQLTIALDRLDQALENLDETLMLFTVF*

mRNA from alignment at chr4:580258..582456+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G01990.1 ID=NO04G01990.1|Name=NO04G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp|location=Sequence derived from alignment at chr4:580258..582456+ (Nannochloropsis oceanica)
ATGTCCGTTTCACCACTCTACGGCGGAGCCTCCTCCTCAAACCAGCAGTA
TAAGCTGGCCCTGAATATTTTAAACGAGCATTTTGGTTCCGTCGTCCGCG
ATGTAGGCGCCTACGTCTTGCGTCGCGGCCGATGTACCCTAGCCGAGGCC
CGACGGGACATCGTGGACGAAGAGGGACACCGCCACAAGCTCAGCCAAAT
CAAAGACGCCCTCGTCGTTCTGATACAACACAATCTCCTCATTGTCGCTA
TGCCTACAGCTGAGGAAATTCAACGCGTGCATCCCCGCGTCTTTTTCTAC
TACCAGATGGACCTTGACGGGGTGACCGTCCGTCTACGCTTCCCCAAGTT
CCTCCTCCGCGCCCGACAGCTTTACGGTGAAGAGGGACAGGCAGTGCTAG
AAAGTGTCATGCTGCATGGGCGTTTGCCCTTCTCCCAGCTCCATTCCCAG
GTGGAATCCACAATGCAAACACGTCGACAAGCTGCCATTGCTGCAGGCCT
AGTCAATAATAGTGAGGACAAGGGCGAGGACAACGTCAATAAGCCCAACA
GCGGCAACAACATGAGCAGCAACAGCAGCAGTAGCAGCAACAGAAAAGCT
TACCTAATGACCGGTGCCAAGCTCCAAGCACTAATCCACAAAATGATCAC
CTCTCACTACCTCGTCCGTGTCGTTCCCTTCGATCTTCTCACGCCCTCCC
CTGAAGCTCTGACCAGCGCTGGTGCCGCAGCTGCTATCCGTGGCTCCCGC
GCAGCTGCCAATAAAGCAGCAGCAGCTGCAGCGGCTGACGCGACCGCGCG
AGCATCGGAGGCGTTGGCGATTAAGAAAAGGGGCAGGAGACTTGATACTC
AAGATGAGAGTCAGGATGACGAAGCGATTCCTGTGGAGCTAGCCATGATG
CTGCCCCCGGAGGAGAAGGGGGGAGGAAAAGCGAACGATAGCACGAAAAA
GAGGATGAGGACGAAAGGCTACGGGGCCGAGGAGGGGGAGGGGAGGGAGG
AGGAAGAGGAGGAAGGGGAGGAGGAAGAGAAGGAAGATCAGGAGGAGGGA
GATGTTGGTGCTCGTAAATCGGCCGCTGCAGCTGCGCGAAATCAGAATAA
GAAAGCGAAAAGGCGTATAGACGAAGAGGAGGAGCACGAAGACGACGGGG
AGGGTGCACATATTAGGAAGAGAGATAAGTCAATGGGAAGAGCAGCGGCG
GCAGAAGCAGCAAAGAGAAGTCGGCTGCAAGAGATTGTGGAGGAAGACGA
GGACATACGACAGACCCTCAGCAGGTCCGCCACGGCCAATGCCGCCATCG
CTACCGGCCTAGGGCAAGGTGAGTTTTCTCTTTCCTCGTTGCTAGCAGCG
GGGGATAGTCTGCTCTGGAAGGTGGGCTTGGAACAGTTCCATCGGGACTT
GCGGCATGTGTGTTGTGTGAAGTTTGTCAGGCAGAAGGTGAACACCACGG
CCGAGTCCCTTGTGCGGTCCATCTTAGAGCACAGCTTGCCATTGGAGCAT
GGAGATGTGGTGAATTGTGAACGGTCCCGGGGTCTAAGCTTGGCGGAGTT
GACGAGGAAAGTGTCGTTGCCGCCCAGTGTGACGGTGAAGATGTACATGG
ACGTGCTGCAAAATGACCCCGTGCGGGTCGTGGGGTTTGAGGGAGGGGGA
AGCGGAGGGGTCTACAGTGTGTTTTTGGGAAATATCTGCGAGAATTTGAG
ACAGAGGACAATGCATAGTATTGTGAGGGAAAGATATAGCAGTGACGCGA
AGAGTAGTGATGGGGATCGGAACGCGCGGATTTGCAGGGTATTGTTGGAG
AAGAAATTCTTGGATCAACAGCAACTAAGTGAGATGGCCATGATGAGTTT
GCGGGAGACGAGGGAAAGGTTATATTACATGTATATGGACGAGATGGTGA
CTTTCCAGGAAATTCCTCGCAGAGCGGATCATCACCCGAACCAGACGTTT
TTCCTGTGGACTTTCAACATGAAGCAGGTCGGGGAGGAAGTCGTGCAAAG
GATGTACAAAGGGGCATTAAATTTACGCTTGAGACGACAGAAGGAAACTG
AGGAGAAGAAAGATTTGTTGGCCAATAAGGACAATATCAGGGATGAGGTA
GAGGCTGCGCATTTTGACCAGTTGACCATAGCGCTGGATCGACTCGACCA
GGCATTAGAGAATCTAGATGAGACCCTCATGTTGTTTACGGTGTTTTAG

Coding sequence (CDS) from alignment at chr4:580258..582456+

>NO04G01990.1 ID=NO04G01990.1|Name=NO04G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=2199bp|location=Sequence derived from alignment at chr4:580258..582456+ (Nannochloropsis oceanica)
ATGTCCGTTTCACCACTCTACGGCGGAGCCTCCTCCTCAAACCAGCAGTA
TAAGCTGGCCCTGAATATTTTAAACGAGCATTTTGGTTCCGTCGTCCGCG
ATGTAGGCGCCTACGTCTTGCGTCGCGGCCGATGTACCCTAGCCGAGGCC
CGACGGGACATCGTGGACGAAGAGGGACACCGCCACAAGCTCAGCCAAAT
CAAAGACGCCCTCGTCGTTCTGATACAACACAATCTCCTCATTGTCGCTA
TGCCTACAGCTGAGGAAATTCAACGCGTGCATCCCCGCGTCTTTTTCTAC
TACCAGATGGACCTTGACGGGGTGACCGTCCGTCTACGCTTCCCCAAGTT
CCTCCTCCGCGCCCGACAGCTTTACGGTGAAGAGGGACAGGCAGTGCTAG
AAAGTGTCATGCTGCATGGGCGTTTGCCCTTCTCCCAGCTCCATTCCCAG
GTGGAATCCACAATGCAAACACGTCGACAAGCTGCCATTGCTGCAGGCCT
AGTCAATAATAGTGAGGACAAGGGCGAGGACAACGTCAATAAGCCCAACA
GCGGCAACAACATGAGCAGCAACAGCAGCAGTAGCAGCAACAGAAAAGCT
TACCTAATGACCGGTGCCAAGCTCCAAGCACTAATCCACAAAATGATCAC
CTCTCACTACCTCGTCCGTGTCGTTCCCTTCGATCTTCTCACGCCCTCCC
CTGAAGCTCTGACCAGCGCTGGTGCCGCAGCTGCTATCCGTGGCTCCCGC
GCAGCTGCCAATAAAGCAGCAGCAGCTGCAGCGGCTGACGCGACCGCGCG
AGCATCGGAGGCGTTGGCGATTAAGAAAAGGGGCAGGAGACTTGATACTC
AAGATGAGAGTCAGGATGACGAAGCGATTCCTGTGGAGCTAGCCATGATG
CTGCCCCCGGAGGAGAAGGGGGGAGGAAAAGCGAACGATAGCACGAAAAA
GAGGATGAGGACGAAAGGCTACGGGGCCGAGGAGGGGGAGGGGAGGGAGG
AGGAAGAGGAGGAAGGGGAGGAGGAAGAGAAGGAAGATCAGGAGGAGGGA
GATGTTGGTGCTCGTAAATCGGCCGCTGCAGCTGCGCGAAATCAGAATAA
GAAAGCGAAAAGGCGTATAGACGAAGAGGAGGAGCACGAAGACGACGGGG
AGGGTGCACATATTAGGAAGAGAGATAAGTCAATGGGAAGAGCAGCGGCG
GCAGAAGCAGCAAAGAGAAGTCGGCTGCAAGAGATTGTGGAGGAAGACGA
GGACATACGACAGACCCTCAGCAGGTCCGCCACGGCCAATGCCGCCATCG
CTACCGGCCTAGGGCAAGGTGAGTTTTCTCTTTCCTCGTTGCTAGCAGCG
GGGGATAGTCTGCTCTGGAAGGTGGGCTTGGAACAGTTCCATCGGGACTT
GCGGCATGTGTGTTGTGTGAAGTTTGTCAGGCAGAAGGTGAACACCACGG
CCGAGTCCCTTGTGCGGTCCATCTTAGAGCACAGCTTGCCATTGGAGCAT
GGAGATGTGGTGAATTGTGAACGGTCCCGGGGTCTAAGCTTGGCGGAGTT
GACGAGGAAAGTGTCGTTGCCGCCCAGTGTGACGGTGAAGATGTACATGG
ACGTGCTGCAAAATGACCCCGTGCGGGTCGTGGGGTTTGAGGGAGGGGGA
AGCGGAGGGGTCTACAGTGTGTTTTTGGGAAATATCTGCGAGAATTTGAG
ACAGAGGACAATGCATAGTATTGTGAGGGAAAGATATAGCAGTGACGCGA
AGAGTAGTGATGGGGATCGGAACGCGCGGATTTGCAGGGTATTGTTGGAG
AAGAAATTCTTGGATCAACAGCAACTAAGTGAGATGGCCATGATGAGTTT
GCGGGAGACGAGGGAAAGGTTATATTACATGTATATGGACGAGATGGTGA
CTTTCCAGGAAATTCCTCGCAGAGCGGATCATCACCCGAACCAGACGTTT
TTCCTGTGGACTTTCAACATGAAGCAGGTCGGGGAGGAAGTCGTGCAAAG
GATGTACAAAGGGGCATTAAATTTACGCTTGAGACGACAGAAGGAAACTG
AGGAGAAGAAAGATTTGTTGGCCAATAAGGACAATATCAGGGATGAGGTA
GAGGCTGCGCATTTTGACCAGTTGACCATAGCGCTGGATCGACTCGACCA
GGCATTAGAGAATCTAGATGAGACCCTCATGTTGTTTACGGTGTTTTAG

Synonyms

Publications