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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:547794..551237 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01890.1 vs.
Match: EWM28611.1 (ww domain binding protein 4 (formin binding protein 21) [Nannochloropsis gaditana]) HSP 1 Score: 414.8 bits (1065), Expect = 5.000e-112 Identity = 253/440 (57.50%), Postives = 313/440 (71.14%), Query Frame = 0
Query: 267 MSEYWRSTPKYCCKFCNVWMDDNTTSRRLHDGGARHKQAVEDFFKAKREAKRQGSLDDGEVSKELRAIEKAAQAQADLDAAMFG------IGGGMPPPPPPP------ASRIPPPP----PPRENLLRPPPPPPPQRREGE-GGYR--KDEEREEEGKE----GEEEAVEPEGRYSVDGVFYLEGKHFPEKLVTGTRCEVWAEGEDEWREGRVARVHVTAVPNTTLVLRKFAVAFVKRKMAEEEEAAEERGKEKEGAGGKEGEEEEIEEDITPDRIRMVEA-HLLGTVQRPLPSPPPPPPINMDTGLGGWQTVSVRTFDEEAEKKASLKAIKAETKKRKKEDAEKRSKMIEEAMEGEDALSSYDPHNRGMYKGIDLNAAARGEGGREGE-VLLGEVGGATVDIDLGGDKDGPVAFKKKKKAGGEGAGTKFRRRRTSGDDD 682
M++YW+STPK+CCKFCNVWMDDN TSRRLH+GGARHKQAVE+FFKA+REAKRQGS+ DGE+SKELR IEKAAQAQA+ DAAMF + PPPPPP +SR PPPP PPR +R PP PP R G+ G+R K EERE G G A E EGRY+VDGV +LEGK +LV GT C+VW E +D WRE V+RV VTAVPNT+L LRKF+V R+ +EA E + +G E E +E+EE + DRIR+VE H +G V LP PPPPPP++ DTGLGGWQTVSVR DEEAE+KAS A++AE+K+RK+EDA++R++M+ EAMEGEDA+SSYDPH RG+YKG+DL GG EG ++GEVGGA +++DLGGD+ GPVAF+K++ G+G G KFRR+R DD+
Sbjct: 1 MADYWKSTPKHCCKFCNVWMDDNKTSRRLHEGGARHKQAVEEFFKAQREAKRQGSIGDGELSKELREIEKAAQAQAEKDAAMFKSSVVTTVERAAPPPPPPRPPTFSLSSRPPPPPLPPPPPRPPGVRHPPVPPSHRVRGDVDGWRDVKKEEREVNGGSEDVTGGSAAAEVEGRYTVDGVTFLEGKAVETRLVRGTPCQVWVEKDDAWREAIVSRVEVTAVPNTSLTLRKFSVILGARRPDGGKEAREGQAAVTQG----EEEAKEVEEGVLSDRIRLVEGEHSMGGVDT-LPPPPPPPPVDEDTGLGGWQTVSVRMVDEEAERKASEAAVRAESKRRKEEDAQRRARMLAEAMEGEDAMSSYDPHGRGIYKGMDLKV-----GGTEGSGAIVGEVGGAALEVDLGGDQAGPVAFRKRRAGEGKGGG-KFRRKRAREDDE 429
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01890.1 ID=NO04G01890.1|Name=NO04G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2122bp ATGGAGAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGGCCTTGCA AGGCGCATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGTGCGAGGA CAGTTGAGGTGCGGCTACCCGAGGACCTGGAAAAGGATTTGGATGGGCTC ATCATTCCTGGCGGCGAAAGTACCGCCATGGCTATCGTGGGAGAGCGTCA TGGTATCTTTCCCAAGCTTAAGGCCTTCGTGCAAGGAGGCAAGCCAGTGT GGGGGACATGTGCAGGCATGATCCTGTTATCGAACAAGGCGGTGATGCAA AAAGATGGTGGACAACCTTTGATCGGTGGGTTGGACGTGGAAGTGTGCCG AAATTATTTTGGGAGCCAGATCTCGAGCTTTGAAGTCGTATTAGATTTGG AAGGGGCCGCGGCCGAGGGCAGTCTGGGCGCGGCCGGTCCGGTTTCAGCA GTCTTCATTCGCGCGCCTGCCATTCTCGAGGCTGGTCCCAATGTCCACGT CCTCGCGAGGGTCAAGGCCACCCCCTGTGCCAAGGCCAGGACCTGTATCG AAGAGGTCTACCAGCAGCAGCAGCAGCAGCAGCAGCAAGAACAATCGCAA AAGCAAAGAACGACGAGGATGACGAGGCAGGAGGATGGGAAGATGGAAGT GATGGTGGCCGTGCAGCAAGGCCAGCTACTCGCCACTGCCTTCCATCCAG AGCTCACACCCGAGCGGTGGTGGCACCAATACTTTTTGTCCTTATACTTT GCGGCACCACACCAAAGAGAAGCAGGAGACTACCCCGCCTTCGGCATCAT GAGCGAATACTGGAGATCAACGCCGAAATACTGCTGCAAATTTTGCAATG TCTGGATGGACGACAATACGACCTCCCGTCGTCTGCACGATGGTGGAGCC AGGCATAAACAGGCAGTGGAGGATTTCTTTAAGGCGAAGCGTGAGGCAAA ACGGCAAGGCTCTCTCGATGACGGGGAGGTAAGCAAAGAGCTGCGAGCCA TCGAGAAGGCGGCCCAAGCACAAGCTGACCTGGATGCTGCCATGTTTGGC ATTGGGGGAGGCATGCCTCCTCCTCCTCCTCCTCCTGCTTCTCGCATTCC TCCTCCACCCCCACCACGTGAGAATCTGTTGCGACCGCCACCGCCGCCAC CCCCTCAACGAAGGGAAGGGGAAGGGGGATATCGCAAGGACGAGGAAAGG GAGGAGGAAGGGAAGGAGGGCGAGGAGGAGGCTGTGGAGCCAGAAGGGAG ATATAGTGTAGATGGGGTGTTCTACTTGGAAGGAAAACACTTTCCGGAGA AGCTGGTGACGGGGACGAGGTGCGAGGTCTGGGCGGAGGGGGAGGATGAA TGGAGGGAGGGGAGGGTGGCGCGGGTACACGTGACGGCAGTCCCCAACAC CACGCTAGTCTTGCGAAAATTCGCAGTAGCCTTTGTGAAGAGGAAAATGG CTGAGGAGGAGGAGGCAGCGGAGGAGAGAGGGAAGGAGAAAGAGGGGGCG GGGGGGAAGGAGGGGGAGGAGGAAGAGATAGAAGAAGACATCACTCCTGA TCGAATTCGCATGGTGGAGGCCCACCTCCTCGGCACCGTTCAACGTCCCC TTCCTTCTCCTCCCCCTCCTCCTCCTATCAACATGGATACCGGGCTGGGG GGCTGGCAGACTGTGTCAGTTCGTACGTTTGATGAGGAGGCAGAGAAAAA AGCGAGCTTGAAGGCGATCAAAGCCGAGACAAAAAAGAGGAAGAAGGAAG ATGCGGAAAAACGTTCTAAAATGATCGAGGAAGCAATGGAAGGCGAGGAT GCCCTCTCTTCCTACGATCCTCACAACCGAGGGATGTACAAGGGAATTGA CTTAAACGCGGCGGCAAGGGGGGAGGGAGGGAGAGAGGGAGAAGTGCTGC TTGGGGAGGTGGGGGGAGCGACGGTGGACATCGATCTGGGGGGGGATAAA GACGGGCCGGTGGCGTTCAAGAAGAAGAAAAAGGCGGGCGGGGAAGGAGC AGGTACAAAGTTTAGGAGGAGGAGGACGAGTGGTGATGACGATGACTAAC GAAGAGGAGAGAGTGACAATGAAGAGGCGTGGACCGGGGAAGGAAACAAA ACAGAGCTCATGCATAAGACAC back to topprotein sequence of NO04G01890.1 >NO04G01890.1-protein ID=NO04G01890.1-protein|Name=NO04G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=683bp MERVHPTAPCIGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGL IIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQ KDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDLEGAAAEGSLGAAGPVSA VFIRAPAILEAGPNVHVLARVKATPCAKARTCIEEVYQQQQQQQQQEQSQ KQRTTRMTRQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSLYF AAPHQREAGDYPAFGIMSEYWRSTPKYCCKFCNVWMDDNTTSRRLHDGGA RHKQAVEDFFKAKREAKRQGSLDDGEVSKELRAIEKAAQAQADLDAAMFG IGGGMPPPPPPPASRIPPPPPPRENLLRPPPPPPPQRREGEGGYRKDEER EEEGKEGEEEAVEPEGRYSVDGVFYLEGKHFPEKLVTGTRCEVWAEGEDE WREGRVARVHVTAVPNTTLVLRKFAVAFVKRKMAEEEEAAEERGKEKEGA GGKEGEEEEIEEDITPDRIRMVEAHLLGTVQRPLPSPPPPPPINMDTGLG GWQTVSVRTFDEEAEKKASLKAIKAETKKRKKEDAEKRSKMIEEAMEGED ALSSYDPHNRGMYKGIDLNAAARGEGGREGEVLLGEVGGATVDIDLGGDK DGPVAFKKKKKAGGEGAGTKFRRRRTSGDDDD* back to topmRNA from alignment at chr4:547794..551237- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01890.1 ID=NO04G01890.1|Name=NO04G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=3444bp|location=Sequence derived from alignment at chr4:547794..551237- (Nannochloropsis oceanica) ATGGAGAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGGCCTTGCA
AGGCGCATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGTGCGAGGA
CAGTTGAGGTGAGTGGTGACGCAGGAAAGGCAGGCACAAGGCCCACATTG
CTCTAGCTGGAGGTCGTAAGGTATCGCACGGACTGAAGAGGCTGGCGGAG
AGTTGTGCCATAGTGCTGTCTAGAGGCGGACGGGGGAGATGGGCAGAACG
ATGGGCAGCTTTCTTATCCTCCCCCGCCATAAAACCGCCATGGAACAAAC
CCATCTCGGCCCACTCACGCCTACCCCACCTATCCAATTCAAAATTACGC
AGGTGCGGCTACCCGAGGACCTGGAAAAGGATTTGGATGGGCTCATCATT
CCTGGCGGCGAAAGTACCGCCATGGCTATCGTGGGAGAGCGTCATGGTAT
CTTTCCCAAGCTTAAGGCCTTCGTGCAAGGAGGCAAGCCAGTGTGGGGGA
CATGTGCAGGCATGATCCTGTTATCGAACAAGGCGGTGATGCAAAAAGAT
GGTGGACAACCTTTGATCGGTGGGTTGGACGTGGAAGTGTGCCGAAATTA
TTTTGGGAGCCAGGTAATAAATGAGAGAGAAGGAGGAGATGGAGGAGAGT
GAGAACCTTGCAGGGTGACCTCTCGTTGGCCACATGAAGAAACAGAAGTG
AAAAGCGCTGCGTCTCTGATTCTTACGCGTACATATATACACATACACGT
GCAAATGTATATACATGAATATTATATACAAATATATGCGTCCACAGATC
TCGAGCTTTGAAGTCGTATTAGATTTGGAAGGGGCCGCGGCCGAGGGCAG
TCTGGGCGCGGCCGGTCCGGTTTCAGCAGTCTTCATTCGCGCGCCTGCCA
TTCTCGAGGTATGCTCAACGTCCATAGAGAGGAGTTAAAAAATAAACTGA
AGGGATTATTGAAAATGCTGGCCGCATTCTACATCACTTCATTCTCTTCC
CTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCTGGTCCCAATG
TCCACGTCCTCGCGAGGGTCAAGGCCACCCCCTGTGCCAAGGCCAGGACC
TGTATCGAAGAGGTCTACCAGCAGCAGCAGCAGCAGCAGCAGCAAGAACA
ATCGCAAAAGCAAAGAACGACGAGGATGACGAGGCAGGAGGATGGGAAGA
TGGAAGTGATGGTGGCCGTGCAGCAAGGCCAGCTACTCGCCACTGCCTTC
CATCCAGAGCTCACACCCGAGCGGTGGTGGCACCAATACTTTTTGTCCTT
ATGTCAGTAGCAGCTGCAGCAGTAGCAGCAGATGCAGACCTAGAAGGAGG
AGAAAGAGGAAGAGGGTGATGAGGAGGACGGATGAGGAAGTGGGGGAAGA
GGTCGTCAGCAGCAGCTGCAGCAGTAGCAGCAAGAGAAGGTGGAAAAACG
TGGAAAGGATCAATATGGACAGTAGGGATGACTGTGAAAGCCATAAGATA
TTTTGACAGTCAAAAAGGCACAATGAGACTGCCCAAAAGATTGAAGTGAG
AGGCGTGCATGTATTGTGTGTTGCTTTACACAGGATGTACGATTTTGATG
AGAACGAGAGCAGAGTAAAGAAGATAACAAAGAGGTCATACCCTAGACTA
CACCACATGTGCATGGGACCTTGAAATGACGGATAGAAAGAAGAAAAGAA
CAATCTGGTTATTGTGAGGAATCGAATCAAAATGTCATCACCGACCGCCC
TCTCTCCACCCTCCCCATCCATCCTCCCCCGCACAGGGGACATAAATCCA
TCGATCTCTCCTCCTCTCAACAAGAGAGCGTCAGCAGCCAGTGGCTAATT
TCCATCACAAAGGGGAAACCGCGGAGGTGAGCGGCCACGCACAACGCTAC
CTACTTGCTTCGATAAGACTTTGCGGCACCACACCAAAGAGAAGCAGGAG
ACTACCCCGCCTTCGGCATCATGAGCGAATACTGGAGATCAACGGTACGT
CCAAGGGAGTCTTGGGTGTGGACAAGCAAGCCGTCAGCCCCTTTCGCCTT
ACTTCCCACCGCCCCTCTTGAATTTCTCTGCAAGCATAAAAGTGGATAAA
CCCACACCTCACACCTCTCCATCCCCTCCCTCCATCCCTGCCAGCCGAAA
TACTGCTGCAAATTTTGCAATGTCTGGATGGACGACAATACGACCTCCCG
TCGTCTGCACGATGGTGGAGCCAGGCATAAACAGGCAGTGGAGGATTTCT
TTAAGGCGAAGCGTGAGGCAAAACGGCAAGGCTCTCTCGATGACGGGGAG
GTAAGCAAAGAGCTGCGAGCCATCGAGAAGGCGGCCCAAGCACAAGCTGA
CCTGGATGCTGCCATGTTTGGCATTGGGGGAGGCATGCCTCCTCCTCCTC
CTCCTCCTGCTTCTCGCATTCCTCCTCCACCCCCACCACGTGAGAATCTG
TTGCGACCGCCACCGCCGCCACCCCCTCAACGAAGGGAAGGGGAAGGGGG
ATATCGCAAGGACGAGGAAAGGGAGGAGGAAGGGAAGGAGGGCGAGGAGG
AGGCTGTGGAGCCAGAAGGGAGATATAGTGTAGATGGGGTGTTCTACTTG
GAAGGAAAACACTTTCCGGAGAAGCTGGTGACGGGGACGAGGTGCGAGGT
CTGGGCGGAGGGGGAGGATGAATGGAGGGAGGGGAGGGTGGCGCGGGTAC
ACGTGACGGCAGTCCCCAACACCACGCTAGTCTTGCGAAAATTCGCAGTA
GCCTTTGTGAAGAGGAAAATGGCTGAGGAGGAGGAGGCAGCGGAGGAGAG
AGGGAAGGAGAAAGAGGGGGCGGGGGGGAAGGAGGGGGAGGAGGAAGAGA
TAGAAGAAGACATCACTCCTGATCGAATTCGCATGGTGGAGGCCCACCTC
CTCGGCACCGTTCAACGTCCCCTTCCTTCTCCTCCCCCTCCTCCTCCTAT
CAACATGGATACCGGGCTGGGGGGCTGGCAGACTGTGTCAGTTCGTACGT
TTGATGAGGAGGCAGAGAAAAAAGCGAGCTTGAAGGCGATCAAAGCCGAG
ACAAAAAAGAGGAAGAAGGAAGATGCGGAAAAACGTTCTAAAATGATCGA
GGAAGCAATGGAAGGCGAGGATGCCCTCTCTTCCTACGATCCTCACAACC
GAGGGATGTACAAGGGAATTGACTTAAACGCGGCGGCAAGGGGGGAGGGA
GGGAGAGAGGGAGAAGTGCTGCTTGGGGAGGTGGGGGGAGCGACGGTGGA
CATCGATCTGGGGGGGGATAAAGACGGGCCGGTGGCGTTCAAGAAGAAGA
AAAAGGCGGGCGGGGAAGGAGCAGGTACAAAGTTTAGGAGGAGGAGGACG
AGTGGTGATGACGATGACTAACGAAGAGGAGAGAGTGACAATGAAGAGGC
GTGGACCGGGGAAGGAAACAAAACAGAGCTCATGCATAAGACAC back to topCoding sequence (CDS) from alignment at chr4:547794..551237- >NO04G01890.1 ID=NO04G01890.1|Name=NO04G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=2049bp|location=Sequence derived from alignment at chr4:547794..551237- (Nannochloropsis oceanica) ATGGAGAGAGTACACCCGACAGCGCCGTGCATCGGTATTCTGGCCTTGCA AGGCGCATTCGAGGAGCATGGGAAAATCATTAGGGAGCTTGGTGCGAGGA CAGTTGAGGTGCGGCTACCCGAGGACCTGGAAAAGGATTTGGATGGGCTC ATCATTCCTGGCGGCGAAAGTACCGCCATGGCTATCGTGGGAGAGCGTCA TGGTATCTTTCCCAAGCTTAAGGCCTTCGTGCAAGGAGGCAAGCCAGTGT GGGGGACATGTGCAGGCATGATCCTGTTATCGAACAAGGCGGTGATGCAA AAAGATGGTGGACAACCTTTGATCGGTGGGTTGGACGTGGAAGTGTGCCG AAATTATTTTGGGAGCCAGATCTCGAGCTTTGAAGTCGTATTAGATTTGG AAGGGGCCGCGGCCGAGGGCAGTCTGGGCGCGGCCGGTCCGGTTTCAGCA GTCTTCATTCGCGCGCCTGCCATTCTCGAGGCTGGTCCCAATGTCCACGT CCTCGCGAGGGTCAAGGCCACCCCCTGTGCCAAGGCCAGGACCTGTATCG AAGAGGTCTACCAGCAGCAGCAGCAGCAGCAGCAGCAAGAACAATCGCAA AAGCAAAGAACGACGAGGATGACGAGGCAGGAGGATGGGAAGATGGAAGT GATGGTGGCCGTGCAGCAAGGCCAGCTACTCGCCACTGCCTTCCATCCAG AGCTCACACCCGAGCGGTGGTGGCACCAATACTTTTTGTCCTTATACTTT GCGGCACCACACCAAAGAGAAGCAGGAGACTACCCCGCCTTCGGCATCAT GAGCGAATACTGGAGATCAACGCCGAAATACTGCTGCAAATTTTGCAATG TCTGGATGGACGACAATACGACCTCCCGTCGTCTGCACGATGGTGGAGCC AGGCATAAACAGGCAGTGGAGGATTTCTTTAAGGCGAAGCGTGAGGCAAA ACGGCAAGGCTCTCTCGATGACGGGGAGGTAAGCAAAGAGCTGCGAGCCA TCGAGAAGGCGGCCCAAGCACAAGCTGACCTGGATGCTGCCATGTTTGGC ATTGGGGGAGGCATGCCTCCTCCTCCTCCTCCTCCTGCTTCTCGCATTCC TCCTCCACCCCCACCACGTGAGAATCTGTTGCGACCGCCACCGCCGCCAC CCCCTCAACGAAGGGAAGGGGAAGGGGGATATCGCAAGGACGAGGAAAGG GAGGAGGAAGGGAAGGAGGGCGAGGAGGAGGCTGTGGAGCCAGAAGGGAG ATATAGTGTAGATGGGGTGTTCTACTTGGAAGGAAAACACTTTCCGGAGA AGCTGGTGACGGGGACGAGGTGCGAGGTCTGGGCGGAGGGGGAGGATGAA TGGAGGGAGGGGAGGGTGGCGCGGGTACACGTGACGGCAGTCCCCAACAC CACGCTAGTCTTGCGAAAATTCGCAGTAGCCTTTGTGAAGAGGAAAATGG CTGAGGAGGAGGAGGCAGCGGAGGAGAGAGGGAAGGAGAAAGAGGGGGCG GGGGGGAAGGAGGGGGAGGAGGAAGAGATAGAAGAAGACATCACTCCTGA TCGAATTCGCATGGTGGAGGCCCACCTCCTCGGCACCGTTCAACGTCCCC TTCCTTCTCCTCCCCCTCCTCCTCCTATCAACATGGATACCGGGCTGGGG GGCTGGCAGACTGTGTCAGTTCGTACGTTTGATGAGGAGGCAGAGAAAAA AGCGAGCTTGAAGGCGATCAAAGCCGAGACAAAAAAGAGGAAGAAGGAAG ATGCGGAAAAACGTTCTAAAATGATCGAGGAAGCAATGGAAGGCGAGGAT GCCCTCTCTTCCTACGATCCTCACAACCGAGGGATGTACAAGGGAATTGA CTTAAACGCGGCGGCAAGGGGGGAGGGAGGGAGAGAGGGAGAAGTGCTGC TTGGGGAGGTGGGGGGAGCGACGGTGGACATCGATCTGGGGGGGGATAAA GACGGGCCGGTGGCGTTCAAGAAGAAGAAAAAGGCGGGCGGGGAAGGAGC AGGTACAAAGTTTAGGAGGAGGAGGACGAGTGGTGATGACGATGACTAA back to top
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