NO04G01830.1, NO04G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01830.1
Unique NameNO04G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1845
Alignment locationchr4:535471..537315 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:535471..537315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01830.1 vs.
Match: EWM28623.1 (hypothetical protein Naga_100009g68 [Nannochloropsis gaditana])

HSP 1 Score: 421.4 bits (1082), Expect = 4.800e-114
Identity = 262/559 (46.87%), Postives = 352/559 (62.97%), Query Frame = 0 
Query:    4 STLILGAVVLVAWPPAPSVPFPNPALKHLQAFFSTWTVTRVNPGRFLLPNLLMPAGTWR-TELTDLNFENETGGSLDMDSNSHSNNSNSNSTTWLVHAYAPFDADAQRTNALIEKQLGPMLAKRQQDQQHQQSGAPHVVRIGKLDVTQNRRAAQELLDMDEDAGVGSILTVLHLNVDGDGSGNEEQYHGPRTRQALEDLLDRLHANGGELSIAAT-----PTH-LTLHGEIQSFLKEHPLAFVLGRAEEGVVTEEEAMFTATCEALGWYHCAIVHSKKALLRAAVASLWESVKGGHSGAVIAKLDQGRDALPYQPSDVTAASRGLEDWMVQHGFSLVTHLDIAGPHVQQFVFGPKQQQQE--------QQQQRQLVVAVVRPFEDSVEEVKSMLDMLQDAARRHPETRFGYVTSTGSRGWPAFVAEHFVSAEQEGRVEEVSTSSECRLFLLDCATYALYEEPAGVAKLDVLLDGVQGETLRPRLLSLKSVVQAEKRVLSEEEVEQQQLETTAAVAGGTARPIDEGTPTMAPEAVRQLAVEGLAALCIAAVAVTLLLMTT 548
            STL+LGA +L+A PP+PS PFP+PA+KHL  F  +WT TRVNPGR   PN LM    W   ELTDLNF  E   S + D +S   ++ S    WLVH YAPFDA AQRTN LIEK L P L++ +QD+++  +     V + +LD+T+N +AA+++  +D+DA VGS L +L  ++D DG G   +Y GPRTRQ ++ +L  L A  GE  I A+     P + L  H EIQ FL+EHPLAFVLGR EEG VTEEE  F  TC A+ W +CA+V SK+ALLRAAVASL ES++  H G VIAKLD+ RDAL Y+ +    AS  LEDWM+ HGF LV+HLD+  PH+++F+    Q +QE        +Q  RQLV+A ++P  DS  EV ++LD L +AAR +P  RFGY T+ G +GW AF+  HF   + E  VE++S+S   RLF  DC   ALYE   G   L +LL+ V+  T  PR L+ ++   AE R + +++ E   ++TT  V        DEG P +  EA  +L +  L A C A +A+TLL++T+
Sbjct:    3 STLLLGAALLIASPPSPSAPFPSPAVKHLHDFLRSWTATRVNPGRLQWPNSLMTLTKWTGIELTDLNFMTELY-SCNADGSS---SACSTGGIWLVHGYAPFDATAQRTNVLIEKHLTPTLSRARQDERNDMTR----VYVSRLDMTRNPQAAKKIFSIDDDASVGSTLMILRPDLD-DG-GQAAEYRGPRTRQGIKHMLQLLQA--GESPIVASNADVMPVNMLQTHKEIQLFLQEHPLAFVLGRTEEGAVTEEEITFRDTCLAMSWQNCAVVPSKRALLRAAVASLSESLEDNHQGPVIAKLDRVRDALLYRNN----ASTSLEDWMLLHGFPLVSHLDLDSPHLERFILPKPQTRQETEGHKHGPEQGVRQLVIATIQPLNDSDSEVAAVLDALDNAARHNPAVRFGYTTAAGPKGWSAFLNRHFALDDHE--VEKLSSS---RLFFYDCHQRALYEGGTGAENLKLLLEQVEERTQSPRHLTPRARSHAEGRGVKDDD-EGGGIKTTKEV------ECDEGMPKIESEASWRLVLHALVAACAAVLALTLLVVTS 533
The following BLAST results are available for this feature:
BLAST of NO04G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28623.14.800e-11446.87hypothetical protein Naga_100009g68 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01830NO04G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01830.1NO04G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01830.1.cds1NO04G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01830.1 ID=NO04G01830.1|Name=NO04G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp
ATGGTCCTCTCCACTCTCATCCTGGGAGCGGTTGTCCTGGTGGCCTGGCC
GCCGGCCCCCTCTGTCCCCTTCCCGAACCCAGCTCTTAAACATCTGCAGG
CATTCTTCTCCACATGGACAGTTACGCGCGTGAATCCCGGCCGCTTCCTC
CTTCCGAATCTGCTAATGCCGGCGGGCACCTGGAGGACAGAGTTGACAGA
TCTCAACTTTGAAAACGAGACAGGCGGCAGCCTTGACATGGACAGCAACA
GTCACAGCAACAATAGCAACAGCAATTCTACCACCTGGTTGGTACACGCT
TACGCCCCTTTTGATGCCGACGCCCAGCGAACGAACGCCTTGATCGAAAA
GCAATTGGGACCAATGCTGGCGAAGCGGCAACAAGACCAGCAACATCAAC
AATCAGGTGCCCCGCATGTGGTGCGCATAGGCAAGCTAGATGTCACCCAA
AACCGACGGGCCGCTCAGGAGCTACTCGACATGGACGAGGATGCGGGTGT
GGGGTCCATATTAACTGTCTTGCACCTCAATGTCGATGGGGATGGGAGTG
GCAATGAGGAGCAGTATCATGGCCCCCGAACCCGGCAGGCATTGGAAGAC
CTTTTGGACCGTTTGCACGCTAATGGTGGTGAACTTTCGATCGCGGCCAC
GCCCACTCACCTGACATTGCATGGAGAGATCCAATCGTTTTTGAAGGAGC
ATCCGTTGGCTTTTGTATTGGGAAGGGCGGAGGAGGGAGTAGTGACAGAG
GAGGAGGCTATGTTTACAGCCACGTGTGAAGCCCTGGGCTGGTATCATTG
TGCGATAGTGCATTCCAAGAAAGCTTTGCTCCGGGCAGCGGTTGCGTCGC
TGTGGGAATCGGTGAAAGGTGGTCATAGTGGTGCTGTTATTGCGAAGCTT
GACCAGGGACGTGATGCTCTCCCCTACCAACCCTCTGACGTCACGGCGGC
CTCGCGTGGGCTGGAGGACTGGATGGTACAGCACGGCTTCTCGCTTGTCA
CCCACCTGGACATAGCAGGGCCTCATGTGCAGCAATTTGTGTTCGGACCG
AAGCAGCAGCAGCAAGAGCAGCAGCAGCAAAGGCAGTTGGTGGTGGCGGT
GGTCCGCCCCTTCGAGGATTCAGTGGAGGAGGTGAAGAGTATGCTGGACA
TGCTTCAGGACGCAGCTCGAAGGCATCCAGAGACGAGGTTTGGCTATGTA
ACATCGACAGGAAGCAGGGGATGGCCTGCTTTTGTCGCTGAGCATTTTGT
GAGTGCGGAACAGGAAGGAAGGGTGGAAGAGGTATCCACTTCGTCGGAGT
GTCGCTTGTTCCTTTTGGATTGTGCAACGTATGCTTTGTATGAGGAGCCA
GCAGGGGTGGCGAAGCTTGACGTCTTATTAGATGGCGTTCAAGGAGAAAC
ACTGCGCCCCCGTCTTCTTTCTCTGAAATCTGTCGTCCAGGCAGAAAAGC
GCGTGTTGTCTGAGGAGGAAGTAGAGCAGCAGCAATTAGAGACAACAGCA
GCAGTAGCTGGGGGAACGGCAAGGCCAATAGACGAGGGTACACCAACGAT
GGCCCCAGAGGCGGTGCGTCAGTTGGCGGTGGAGGGGCTCGCTGCTTTAT
GCATCGCGGCGGTGGCTGTTACCTTGCTGCTGATGACGACGGCTGCTGGT
AAGAAGAAAGAAACAGTAGCATCAGCGGCAGCAGTAGGTAAGGAAGAGAT
CATTGTCGAGAAGAAGGAGGTACATATGGAACAGGAGCAGGGGAAGCAGT
ACTCCTTGCCGACGGTTCCGGCTTTTGGGGAGGAGGGAAATGAGAAGCCG
CAACAGACAAGTAGGATGATGTTGATTTCTGAGTCGCTAGACTAA
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protein sequence of NO04G01830.1

>NO04G01830.1-protein ID=NO04G01830.1-protein|Name=NO04G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp
MVLSTLILGAVVLVAWPPAPSVPFPNPALKHLQAFFSTWTVTRVNPGRFL
LPNLLMPAGTWRTELTDLNFENETGGSLDMDSNSHSNNSNSNSTTWLVHA
YAPFDADAQRTNALIEKQLGPMLAKRQQDQQHQQSGAPHVVRIGKLDVTQ
NRRAAQELLDMDEDAGVGSILTVLHLNVDGDGSGNEEQYHGPRTRQALED
LLDRLHANGGELSIAATPTHLTLHGEIQSFLKEHPLAFVLGRAEEGVVTE
EEAMFTATCEALGWYHCAIVHSKKALLRAAVASLWESVKGGHSGAVIAKL
DQGRDALPYQPSDVTAASRGLEDWMVQHGFSLVTHLDIAGPHVQQFVFGP
KQQQQEQQQQRQLVVAVVRPFEDSVEEVKSMLDMLQDAARRHPETRFGYV
TSTGSRGWPAFVAEHFVSAEQEGRVEEVSTSSECRLFLLDCATYALYEEP
AGVAKLDVLLDGVQGETLRPRLLSLKSVVQAEKRVLSEEEVEQQQLETTA
AVAGGTARPIDEGTPTMAPEAVRQLAVEGLAALCIAAVAVTLLLMTTAAG
KKKETVASAAAVGKEEIIVEKKEVHMEQEQGKQYSLPTVPAFGEEGNEKP
QQTSRMMLISESLD*
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mRNA from alignment at chr4:535471..537315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01830.1 ID=NO04G01830.1|Name=NO04G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp|location=Sequence derived from alignment at chr4:535471..537315- (Nannochloropsis oceanica)
ATGGTCCTCTCCACTCTCATCCTGGGAGCGGTTGTCCTGGTGGCCTGGCC
GCCGGCCCCCTCTGTCCCCTTCCCGAACCCAGCTCTTAAACATCTGCAGG
CATTCTTCTCCACATGGACAGTTACGCGCGTGAATCCCGGCCGCTTCCTC
CTTCCGAATCTGCTAATGCCGGCGGGCACCTGGAGGACAGAGTTGACAGA
TCTCAACTTTGAAAACGAGACAGGCGGCAGCCTTGACATGGACAGCAACA
GTCACAGCAACAATAGCAACAGCAATTCTACCACCTGGTTGGTACACGCT
TACGCCCCTTTTGATGCCGACGCCCAGCGAACGAACGCCTTGATCGAAAA
GCAATTGGGACCAATGCTGGCGAAGCGGCAACAAGACCAGCAACATCAAC
AATCAGGTGCCCCGCATGTGGTGCGCATAGGCAAGCTAGATGTCACCCAA
AACCGACGGGCCGCTCAGGAGCTACTCGACATGGACGAGGATGCGGGTGT
GGGGTCCATATTAACTGTCTTGCACCTCAATGTCGATGGGGATGGGAGTG
GCAATGAGGAGCAGTATCATGGCCCCCGAACCCGGCAGGCATTGGAAGAC
CTTTTGGACCGTTTGCACGCTAATGGTGGTGAACTTTCGATCGCGGCCAC
GCCCACTCACCTGACATTGCATGGAGAGATCCAATCGTTTTTGAAGGAGC
ATCCGTTGGCTTTTGTATTGGGAAGGGCGGAGGAGGGAGTAGTGACAGAG
GAGGAGGCTATGTTTACAGCCACGTGTGAAGCCCTGGGCTGGTATCATTG
TGCGATAGTGCATTCCAAGAAAGCTTTGCTCCGGGCAGCGGTTGCGTCGC
TGTGGGAATCGGTGAAAGGTGGTCATAGTGGTGCTGTTATTGCGAAGCTT
GACCAGGGACGTGATGCTCTCCCCTACCAACCCTCTGACGTCACGGCGGC
CTCGCGTGGGCTGGAGGACTGGATGGTACAGCACGGCTTCTCGCTTGTCA
CCCACCTGGACATAGCAGGGCCTCATGTGCAGCAATTTGTGTTCGGACCG
AAGCAGCAGCAGCAAGAGCAGCAGCAGCAAAGGCAGTTGGTGGTGGCGGT
GGTCCGCCCCTTCGAGGATTCAGTGGAGGAGGTGAAGAGTATGCTGGACA
TGCTTCAGGACGCAGCTCGAAGGCATCCAGAGACGAGGTTTGGCTATGTA
ACATCGACAGGAAGCAGGGGATGGCCTGCTTTTGTCGCTGAGCATTTTGT
GAGTGCGGAACAGGAAGGAAGGGTGGAAGAGGTATCCACTTCGTCGGAGT
GTCGCTTGTTCCTTTTGGATTGTGCAACGTATGCTTTGTATGAGGAGCCA
GCAGGGGTGGCGAAGCTTGACGTCTTATTAGATGGCGTTCAAGGAGAAAC
ACTGCGCCCCCGTCTTCTTTCTCTGAAATCTGTCGTCCAGGCAGAAAAGC
GCGTGTTGTCTGAGGAGGAAGTAGAGCAGCAGCAATTAGAGACAACAGCA
GCAGTAGCTGGGGGAACGGCAAGGCCAATAGACGAGGGTACACCAACGAT
GGCCCCAGAGGCGGTGCGTCAGTTGGCGGTGGAGGGGCTCGCTGCTTTAT
GCATCGCGGCGGTGGCTGTTACCTTGCTGCTGATGACGACGGCTGCTGGT
AAGAAGAAAGAAACAGTAGCATCAGCGGCAGCAGTAGGTAAGGAAGAGAT
CATTGTCGAGAAGAAGGAGGTACATATGGAACAGGAGCAGGGGAAGCAGT
ACTCCTTGCCGACGGTTCCGGCTTTTGGGGAGGAGGGAAATGAGAAGCCG
CAACAGACAAGTAGGATGATGTTGATTTCTGAGTCGCTAGACTAA
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Coding sequence (CDS) from alignment at chr4:535471..537315-

>NO04G01830.1 ID=NO04G01830.1|Name=NO04G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1845bp|location=Sequence derived from alignment at chr4:535471..537315- (Nannochloropsis oceanica)
ATGGTCCTCTCCACTCTCATCCTGGGAGCGGTTGTCCTGGTGGCCTGGCC
GCCGGCCCCCTCTGTCCCCTTCCCGAACCCAGCTCTTAAACATCTGCAGG
CATTCTTCTCCACATGGACAGTTACGCGCGTGAATCCCGGCCGCTTCCTC
CTTCCGAATCTGCTAATGCCGGCGGGCACCTGGAGGACAGAGTTGACAGA
TCTCAACTTTGAAAACGAGACAGGCGGCAGCCTTGACATGGACAGCAACA
GTCACAGCAACAATAGCAACAGCAATTCTACCACCTGGTTGGTACACGCT
TACGCCCCTTTTGATGCCGACGCCCAGCGAACGAACGCCTTGATCGAAAA
GCAATTGGGACCAATGCTGGCGAAGCGGCAACAAGACCAGCAACATCAAC
AATCAGGTGCCCCGCATGTGGTGCGCATAGGCAAGCTAGATGTCACCCAA
AACCGACGGGCCGCTCAGGAGCTACTCGACATGGACGAGGATGCGGGTGT
GGGGTCCATATTAACTGTCTTGCACCTCAATGTCGATGGGGATGGGAGTG
GCAATGAGGAGCAGTATCATGGCCCCCGAACCCGGCAGGCATTGGAAGAC
CTTTTGGACCGTTTGCACGCTAATGGTGGTGAACTTTCGATCGCGGCCAC
GCCCACTCACCTGACATTGCATGGAGAGATCCAATCGTTTTTGAAGGAGC
ATCCGTTGGCTTTTGTATTGGGAAGGGCGGAGGAGGGAGTAGTGACAGAG
GAGGAGGCTATGTTTACAGCCACGTGTGAAGCCCTGGGCTGGTATCATTG
TGCGATAGTGCATTCCAAGAAAGCTTTGCTCCGGGCAGCGGTTGCGTCGC
TGTGGGAATCGGTGAAAGGTGGTCATAGTGGTGCTGTTATTGCGAAGCTT
GACCAGGGACGTGATGCTCTCCCCTACCAACCCTCTGACGTCACGGCGGC
CTCGCGTGGGCTGGAGGACTGGATGGTACAGCACGGCTTCTCGCTTGTCA
CCCACCTGGACATAGCAGGGCCTCATGTGCAGCAATTTGTGTTCGGACCG
AAGCAGCAGCAGCAAGAGCAGCAGCAGCAAAGGCAGTTGGTGGTGGCGGT
GGTCCGCCCCTTCGAGGATTCAGTGGAGGAGGTGAAGAGTATGCTGGACA
TGCTTCAGGACGCAGCTCGAAGGCATCCAGAGACGAGGTTTGGCTATGTA
ACATCGACAGGAAGCAGGGGATGGCCTGCTTTTGTCGCTGAGCATTTTGT
GAGTGCGGAACAGGAAGGAAGGGTGGAAGAGGTATCCACTTCGTCGGAGT
GTCGCTTGTTCCTTTTGGATTGTGCAACGTATGCTTTGTATGAGGAGCCA
GCAGGGGTGGCGAAGCTTGACGTCTTATTAGATGGCGTTCAAGGAGAAAC
ACTGCGCCCCCGTCTTCTTTCTCTGAAATCTGTCGTCCAGGCAGAAAAGC
GCGTGTTGTCTGAGGAGGAAGTAGAGCAGCAGCAATTAGAGACAACAGCA
GCAGTAGCTGGGGGAACGGCAAGGCCAATAGACGAGGGTACACCAACGAT
GGCCCCAGAGGCGGTGCGTCAGTTGGCGGTGGAGGGGCTCGCTGCTTTAT
GCATCGCGGCGGTGGCTGTTACCTTGCTGCTGATGACGACGGCTGCTGGT
AAGAAGAAAGAAACAGTAGCATCAGCGGCAGCAGTAGGTAAGGAAGAGAT
CATTGTCGAGAAGAAGGAGGTACATATGGAACAGGAGCAGGGGAAGCAGT
ACTCCTTGCCGACGGTTCCGGCTTTTGGGGAGGAGGGAAATGAGAAGCCG
CAACAGACAAGTAGGATGATGTTGATTTCTGAGTCGCTAGACTAA
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Synonyms
Publications