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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:497810..499741 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01650.1 vs.
Match: EWM28581.1 (magnesium transporter [Nannochloropsis gaditana]) HSP 1 Score: 583.2 bits (1502), Expect = 1.000e-162 Identity = 375/605 (61.98%), Postives = 434/605 (71.74%), Query Frame = 0
Query: 1 MLFLRHIPQTSSESLEAASSSLSTSQH---AYYRSAGAAAATGSRYNNNGIGGGGVGHHSVGHHSLNHLCHDEDGEDVSKIRSMHGRAAFISATKAWLRRAVDAVWIPGGSPAAAAAAAGGMGRGSSPSRHMKWRAASQDILGLSGSAGGANGAGDGLRYYKSPPSHYASFQQRQQLQQLQY----RYHHPNPGYKVGPLLLAAHQNIGDAVRGGSGDGG--GGDDNEQQQQQQQQHHHHHHQNRRQKLHEHMGLNAMDKVSINMTLAANLRAAAIEAGREGGTAGGGYGGREGAKECPVELIAPCAVPSASLKDYGALREEGLVVPSSFLVGDVVDFITRMSKLERYSGVGSGEGG-SEGGIGGEARCRSLERIFVTDCGRLLGYVTSMDLLVQERTASLLGIVRPCEVLVKDTDEYDDAILAMRRKRLTYAPVVTKEEVVVGIITPSDMLNEMELEATDDVSRFSGSGRGSESFFGTSVLQVVTARASWLVSLLMLQSLSSIILTHFSVLIERHLVIALFLTMLTGTAGNAGNQSSAMVIRGIATGEINRKNSWRVVWREVKAALLMSVLLAVAAFVRVYITPGSTFMSTVAVTLALSVTVVG 596
MLFLRHIPQ SSE EA S +STSQH ++YRS AA + Y+ GG G H +LN ED ED+SK + ++GR +I+ + ++RR ++ VW PG + + G S+ S +++WR A+QD+LGL G+AG AN G G R+YK SH SFQ Q + ++ R +PG KVG LLLAAH G+A G DGG GG D E K H +G +A+D++SINMTL ANLR G GG+ ++CPVELIAPCAVPSASL ++ LREEGLVVP+SFLVGDVVDFITRMSKLERY+G G G+G +EGG GG CRSLERIFVTDCGRL+GYVTSMDLLVQ+R A LL IVR CEV+V+D+DEYDDAI AMR KRLTYAPVVT++EVVVGIITPSDML EME+EATDDVSR+SGSG +ESFFGT VLQ+VTARASWLVSLLMLQSLSSIILTHFS LIERHLVIALFLTMLTGTAGNAGNQSSAMVIRGIATGEINRKN W+ V REVKAALLMS LLAVAAF+RVYITPGST MSTVAVTLALSVTV G
Sbjct: 107 MLFLRHIPQASSEISEAGLS-MSTSQHNQQSHYRSYTAAGSNRFNYH----GGQGGYQQGQSHPTLN-----EDTEDISKSKPLNGRNGWINLARDYIRRTLEVVWTPGSQ--RSGVSGGSSSTNSASSSYLRWRRATQDLLGLGGNAGAANTMGGGTRHYKVHHSHN-SFQPPPQPRHARHLLAPRGQGLHPG-KVGSLLLAAHPTSGEAGSAGF-DGGMLGGRDEEGG-----------------KPHHRIGSSALDRISINMTLEANLRE--------------GVGGQL-RRDCPVELIAPCAVPSASLVEHNVLREEGLVVPASFLVGDVVDFITRMSKLERYNG-GPGDGREAEGGGGGP--CRSLERIFVTDCGRLVGYVTSMDLLVQDRAAPLLSIVRSCEVVVRDSDEYDDAIGAMRAKRLTYAPVVTEDEVVVGIITPSDMLKEMEMEATDDVSRYSGSG-STESFFGTPVLQLVTARASWLVSLLMLQSLSSIILTHFSALIERHLVIALFLTMLTGTAGNAGNQSSAMVIRGIATGEINRKNGWKAVVREVKAALLMSALLAVAAFLRVYITPGSTVMSTVAVTLALSVTVAG 660
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01650.1 ID=NO04G01650.1|Name=NO04G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
ATGCTCTTCTTACGACACATTCCGCAGACTTCTAGTGAGTCTTTGGAGGC
TGCTTCGTCCTCCTTGTCCACCTCGCAGCATGCGTATTATCGCTCTGCGG
GCGCTGCAGCTGCCACGGGGAGTCGATACAATAATAATGGTATCGGTGGA
GGAGGGGTAGGTCATCACAGCGTAGGTCATCACAGCCTCAATCATCTTTG
CCATGACGAGGATGGGGAGGACGTGAGTAAAATTAGGTCCATGCATGGGA
GAGCTGCTTTTATTAGTGCTACCAAGGCTTGGCTTCGACGGGCTGTCGAC
GCGGTGTGGATCCCAGGGGGCAGTCCTGCTGCTGCGGCTGCTGCCGCTGG
AGGGATGGGTAGGGGTAGTAGTCCCAGCAGGCACATGAAGTGGCGGGCAG
CAAGTCAGGATATTTTGGGTTTGAGTGGAAGTGCGGGCGGAGCGAATGGA
GCGGGGGATGGGTTACGCTATTATAAGTCCCCACCTTCTCACTATGCCTC
GTTTCAGCAGCGGCAGCAGCTGCAGCAGCTGCAGTACCGCTACCATCACC
CTAATCCTGGTTACAAGGTTGGACCCCTTCTACTAGCGGCTCATCAAAAT
ATAGGGGATGCTGTCCGTGGCGGGTCTGGGGATGGAGGAGGAGGGGATGA
TAATGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCACCACCACCACCACC
AGAACCGGCGGCAGAAATTGCACGAACATATGGGTTTAAATGCCATGGAC
AAGGTAAGTATCAACATGACCCTCGCAGCAAATCTCCGTGCCGCCGCCAT
CGAAGCCGGGCGAGAAGGAGGGACGGCTGGAGGAGGGTATGGAGGAAGGG
AGGGAGCGAAGGAGTGCCCTGTGGAGCTGATAGCTCCGTGCGCCGTGCCA
TCAGCGTCGCTTAAGGATTATGGAGCCTTGAGAGAGGAAGGGTTGGTTGT
GCCCTCATCCTTTCTTGTTGGGGATGTGGTTGATTTCATCACGAGAATGA
GTAAGTTAGAACGATACAGTGGTGTGGGCTCTGGGGAGGGAGGGAGCGAG
GGAGGGATAGGGGGGGAAGCACGGTGTCGGTCACTTGAACGGATTTTCGT
CACGGATTGTGGAAGATTGCTTGGGTACGTGACTTCGATGGACTTGTTGG
TGCAGGAACGAACGGCGTCTCTGCTCGGTATAGTGAGGCCGTGTGAGGTT
CTTGTGAAGGATACGGACGAATACGACGATGCGATATTAGCGATGAGGAG
GAAGAGGCTGACGTACGCGCCAGTGGTGACGAAGGAGGAGGTGGTGGTGG
GGATCATTACTCCCTCAGACATGCTGAACGAGATGGAGCTGGAGGCGACG
GATGACGTGAGCAGGTTCTCAGGGAGCGGGCGGGGGTCAGAGTCGTTTTT
TGGCACCTCTGTGTTGCAGGTGGTGACGGCGAGGGCCAGTTGGTTGGTTA
GCCTGCTGATGCTCCAGAGTTTGAGCTCGATTATTTTGACGCATTTCTCG
GTGTTGATTGAGCGACATTTGGTGATTGCCTTGTTTCTGACGATGTTGAC
AGGGACAGCGGGGAATGCAGGGAACCAGAGCAGCGCGATGGTGATTCGTG
GGATTGCTACGGGGGAGATTAACAGGAAAAATAGTTGGCGGGTGGTTTGG
AGGGAGGTGAAGGCGGCGTTGCTGATGAGTGTGTTGTTGGCCGTCGCGGC
GTTTGTCCGCGTGTACATCACGCCGGGGAGCACCTTCATGTCAACTGTGG
CCGTTACTCTTGCGTTGAGCGTGACGGTTGTGGGTGCTTGTGCGTTTGGG
ACGGTGGCGCCGCTGGTCATGGATCGATTGGGTGTGGATCCCGCGAATTG
CGCGTCGCCTGCCCTTAGTACCATTGTGGATGTTGGGGGGGTGCTGGTGT
TATGTGCTATTTCGAGTGTTTTGCTTGGATAG back to topprotein sequence of NO04G01650.1 >NO04G01650.1-protein ID=NO04G01650.1-protein|Name=NO04G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MLFLRHIPQTSSESLEAASSSLSTSQHAYYRSAGAAAATGSRYNNNGIGG
GGVGHHSVGHHSLNHLCHDEDGEDVSKIRSMHGRAAFISATKAWLRRAVD
AVWIPGGSPAAAAAAAGGMGRGSSPSRHMKWRAASQDILGLSGSAGGANG
AGDGLRYYKSPPSHYASFQQRQQLQQLQYRYHHPNPGYKVGPLLLAAHQN
IGDAVRGGSGDGGGGDDNEQQQQQQQQHHHHHHQNRRQKLHEHMGLNAMD
KVSINMTLAANLRAAAIEAGREGGTAGGGYGGREGAKECPVELIAPCAVP
SASLKDYGALREEGLVVPSSFLVGDVVDFITRMSKLERYSGVGSGEGGSE
GGIGGEARCRSLERIFVTDCGRLLGYVTSMDLLVQERTASLLGIVRPCEV
LVKDTDEYDDAILAMRRKRLTYAPVVTKEEVVVGIITPSDMLNEMELEAT
DDVSRFSGSGRGSESFFGTSVLQVVTARASWLVSLLMLQSLSSIILTHFS
VLIERHLVIALFLTMLTGTAGNAGNQSSAMVIRGIATGEINRKNSWRVVW
REVKAALLMSVLLAVAAFVRVYITPGSTFMSTVAVTLALSVTVVGACAFG
TVAPLVMDRLGVDPANCASPALSTIVDVGGVLVLCAISSVLLG* back to topmRNA from alignment at chr4:497810..499741+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01650.1 ID=NO04G01650.1|Name=NO04G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp|location=Sequence derived from alignment at chr4:497810..499741+ (Nannochloropsis oceanica)
ATGCTCTTCTTACGACACATTCCGCAGACTTCTAGTGAGTCTTTGGAGGC
TGCTTCGTCCTCCTTGTCCACCTCGCAGCATGCGTATTATCGCTCTGCGG
GCGCTGCAGCTGCCACGGGGAGTCGATACAATAATAATGGTATCGGTGGA
GGAGGGGTAGGTCATCACAGCGTAGGTCATCACAGCCTCAATCATCTTTG
CCATGACGAGGATGGGGAGGACGTGAGTAAAATTAGGTCCATGCATGGGA
GAGCTGCTTTTATTAGTGCTACCAAGGCTTGGCTTCGACGGGCTGTCGAC
GCGGTGTGGATCCCAGGGGGCAGTCCTGCTGCTGCGGCTGCTGCCGCTGG
AGGGATGGGTAGGGGTAGTAGTCCCAGCAGGCACATGAAGTGGCGGGCAG
CAAGTCAGGATATTTTGGGTTTGAGTGGAAGTGCGGGCGGAGCGAATGGA
GCGGGGGATGGGTTACGCTATTATAAGTCCCCACCTTCTCACTATGCCTC
GTTTCAGCAGCGGCAGCAGCTGCAGCAGCTGCAGTACCGCTACCATCACC
CTAATCCTGGTTACAAGGTTGGACCCCTTCTACTAGCGGCTCATCAAAAT
ATAGGGGATGCTGTCCGTGGCGGGTCTGGGGATGGAGGAGGAGGGGATGA
TAATGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCACCACCACCACCACC
AGAACCGGCGGCAGAAATTGCACGAACATATGGGTTTAAATGCCATGGAC
AAGGTAAGTATCAACATGACCCTCGCAGCAAATCTCCGTGCCGCCGCCAT
CGAAGCCGGGCGAGAAGGAGGGACGGCTGGAGGAGGGTATGGAGGAAGGG
AGGGAGCGAAGGAGTGCCCTGTGGAGCTGATAGCTCCGTGCGCCGTGCCA
TCAGCGTCGCTTAAGGATTATGGAGCCTTGAGAGAGGAAGGGTTGGTTGT
GCCCTCATCCTTTCTTGTTGGGGATGTGGTTGATTTCATCACGAGAATGA
GTAAGTTAGAACGATACAGTGGTGTGGGCTCTGGGGAGGGAGGGAGCGAG
GGAGGGATAGGGGGGGAAGCACGGTGTCGGTCACTTGAACGGATTTTCGT
CACGGATTGTGGAAGATTGCTTGGGTACGTGACTTCGATGGACTTGTTGG
TGCAGGAACGAACGGCGTCTCTGCTCGGTATAGTGAGGCCGTGTGAGGTT
CTTGTGAAGGATACGGACGAATACGACGATGCGATATTAGCGATGAGGAG
GAAGAGGCTGACGTACGCGCCAGTGGTGACGAAGGAGGAGGTGGTGGTGG
GGATCATTACTCCCTCAGACATGCTGAACGAGATGGAGCTGGAGGCGACG
GATGACGTGAGCAGGTTCTCAGGGAGCGGGCGGGGGTCAGAGTCGTTTTT
TGGCACCTCTGTGTTGCAGGTGGTGACGGCGAGGGCCAGTTGGTTGGTTA
GCCTGCTGATGCTCCAGAGTTTGAGCTCGATTATTTTGACGCATTTCTCG
GTGTTGATTGAGCGACATTTGGTGATTGCCTTGTTTCTGACGATGTTGAC
AGGGACAGCGGGGAATGCAGGGAACCAGAGCAGCGCGATGGTGATTCGTG
GGATTGCTACGGGGGAGATTAACAGGAAAAATAGTTGGCGGGTGGTTTGG
AGGGAGGTGAAGGCGGCGTTGCTGATGAGTGTGTTGTTGGCCGTCGCGGC
GTTTGTCCGCGTGTACATCACGCCGGGGAGCACCTTCATGTCAACTGTGG
CCGTTACTCTTGCGTTGAGCGTGACGGTTGTGGGTGCTTGTGCGTTTGGG
ACGGTGGCGCCGCTGGTCATGGATCGATTGGGTGTGGATCCCGCGAATTG
CGCGTCGCCTGCCCTTAGTACCATTGTGGATGTTGGGGGGGTGCTGGTGT
TATGTGCTATTTCGAGTGTTTTGCTTGGATAG back to topCoding sequence (CDS) from alignment at chr4:497810..499741+ >NO04G01650.1 ID=NO04G01650.1|Name=NO04G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at chr4:497810..499741+ (Nannochloropsis oceanica)
ATGCTCTTCTTACGACACATTCCGCAGACTTCTAGTGAGTCTTTGGAGGC
TGCTTCGTCCTCCTTGTCCACCTCGCAGCATGCGTATTATCGCTCTGCGG
GCGCTGCAGCTGCCACGGGGAGTCGATACAATAATAATGGTATCGGTGGA
GGAGGGGTAGGTCATCACAGCGTAGGTCATCACAGCCTCAATCATCTTTG
CCATGACGAGGATGGGGAGGACGTGAGTAAAATTAGGTCCATGCATGGGA
GAGCTGCTTTTATTAGTGCTACCAAGGCTTGGCTTCGACGGGCTGTCGAC
GCGGTGTGGATCCCAGGGGGCAGTCCTGCTGCTGCGGCTGCTGCCGCTGG
AGGGATGGGTAGGGGTAGTAGTCCCAGCAGGCACATGAAGTGGCGGGCAG
CAAGTCAGGATATTTTGGGTTTGAGTGGAAGTGCGGGCGGAGCGAATGGA
GCGGGGGATGGGTTACGCTATTATAAGTCCCCACCTTCTCACTATGCCTC
GTTTCAGCAGCGGCAGCAGCTGCAGCAGCTGCAGTACCGCTACCATCACC
CTAATCCTGGTTACAAGGTTGGACCCCTTCTACTAGCGGCTCATCAAAAT
ATAGGGGATGCTGTCCGTGGCGGGTCTGGGGATGGAGGAGGAGGGGATGA
TAATGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCACCACCACCACCACC
AGAACCGGCGGCAGAAATTGCACGAACATATGGGTTTAAATGCCATGGAC
AAGGTAAGTATCAACATGACCCTCGCAGCAAATCTCCGTGCCGCCGCCAT
CGAAGCCGGGCGAGAAGGAGGGACGGCTGGAGGAGGGTATGGAGGAAGGG
AGGGAGCGAAGGAGTGCCCTGTGGAGCTGATAGCTCCGTGCGCCGTGCCA
TCAGCGTCGCTTAAGGATTATGGAGCCTTGAGAGAGGAAGGGTTGGTTGT
GCCCTCATCCTTTCTTGTTGGGGATGTGGTTGATTTCATCACGAGAATGA
GTAAGTTAGAACGATACAGTGGTGTGGGCTCTGGGGAGGGAGGGAGCGAG
GGAGGGATAGGGGGGGAAGCACGGTGTCGGTCACTTGAACGGATTTTCGT
CACGGATTGTGGAAGATTGCTTGGGTACGTGACTTCGATGGACTTGTTGG
TGCAGGAACGAACGGCGTCTCTGCTCGGTATAGTGAGGCCGTGTGAGGTT
CTTGTGAAGGATACGGACGAATACGACGATGCGATATTAGCGATGAGGAG
GAAGAGGCTGACGTACGCGCCAGTGGTGACGAAGGAGGAGGTGGTGGTGG
GGATCATTACTCCCTCAGACATGCTGAACGAGATGGAGCTGGAGGCGACG
GATGACGTGAGCAGGTTCTCAGGGAGCGGGCGGGGGTCAGAGTCGTTTTT
TGGCACCTCTGTGTTGCAGGTGGTGACGGCGAGGGCCAGTTGGTTGGTTA
GCCTGCTGATGCTCCAGAGTTTGAGCTCGATTATTTTGACGCATTTCTCG
GTGTTGATTGAGCGACATTTGGTGATTGCCTTGTTTCTGACGATGTTGAC
AGGGACAGCGGGGAATGCAGGGAACCAGAGCAGCGCGATGGTGATTCGTG
GGATTGCTACGGGGGAGATTAACAGGAAAAATAGTTGGCGGGTGGTTTGG
AGGGAGGTGAAGGCGGCGTTGCTGATGAGTGTGTTGTTGGCCGTCGCGGC
GTTTGTCCGCGTGTACATCACGCCGGGGAGCACCTTCATGTCAACTGTGG
CCGTTACTCTTGCGTTGAGCGTGACGGTTGTGGGTGCTTGTGCGTTTGGG
ACGGTGGCGCCGCTGGTCATGGATCGATTGGGTGTGGATCCCGCGAATTG
CGCGTCGCCTGCCCTTAGTACCATTGTGGATGTTGGGGGGGTGCTGGTGT
TATGTGCTATTTCGAGTGTTTTGCTTGGATAG back to top
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