NO04G01620.1, NO04G01620.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G01620.1
Unique Name	NO04G01620.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2337
Alignment location	chr4:489261..491597 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:489261..491597 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G01620.1 vs.
Match: EWM28622.1 (hypothetical protein Naga_100009g48 [Nannochloropsis gaditana])

HSP 1 Score: 174.5 bits (441), Expect = 1.100e-39
Identity = 124/299 (41.47%), Postives = 158/299 (52.84%), Query Frame = 0

Query:  144 EALRAEVAHLRNKLKEALGDVPVCSICLEIVSYPVELQDCRHLYCCECFYMHATSNTAGNRACPVCRCKINKAPLPPPLAFIQHLEWVKKEKRRHDEEMAAAT-------------AAAAASAPALFATIEKRAGS-------------CGGVDDDNDDDAASASAGAVRQA--AGDDKDVTDAAAAAIAAAATTAARVARTTYQLQMEELKRLFDREDR-----------RRRRP-----GEREGGG--AYDDSDGVYRCPRCHWEMLEGRCARGCGDGEDEGEEEEDMLVVADSSEY 397
            +ALRAEV  LR KL  ALGD+P CSICLE V YPVELQ+CRHL+CC+CFYM+A   T GN ACP CR  + KAPLPPPLAFIQHL+ +K  KRR  E +                  A A S        E++ G                  D++  +D   ++AG + +A  +G  ++  D  A   AAA   AAR AR  YQ QM ELK +F+  +R           RR RP      E +G     YD+SDGVYRC  CHWE+ EG     C   +D+ EE+ D+  V+ +  Y
Sbjct:   72 KALRAEVELLRKKLDAALGDIPACSICLECVDYPVELQECRHLFCCQCFYMYAKWKTTGNIACPACRTTVCKAPLPPPLAFIQHLDAIKVAKRRQQEAVRTGADPGQSLEGGIYRIDAKAESQRRSEEESERKVGEKIKLERWKEGVSMMKSHDEEIGEDDDRSAAGLLDRAGPSGQAQEDRDMEAKKTAAATAIAARRARAAYQGQMVELKVMFEAAERMGEGAVGLNSSRRIRPRTIRNAEMDGSTHLNYDESDGVYRCLNCHWEVDEGGLCARCLHDDDDEEEDVDVAHVSRTDFY 370

The following BLAST results are available for this feature:

BLAST of NO04G01620.1 vs.

BLAST of NO04G01620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28622.1	1.100e-39	41.47	hypothetical protein Naga_100009g48 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G01620	NO04G01620	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G01620.1	NO04G01620.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G01620.1.cds1	NO04G01620.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:489261..491597-
coding sequence from alignment at chr4:489261..491597-

mRNA sequence

>NO04G01620.1 ID=NO04G01620.1|Name=NO04G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2337bp
GATGGCAACTCGCCATCGGGCGGACCTCCTCCCCCCCCTTCCTTTCTTAA
GCACATAATGCAAATAATGCCGGAGGACGACGAAAATGCGCAGCCCTGTA
TCTTCTCCTCCCTCCTGTCACTCTTCTTTCAAATTTTCCTTCCACCATCC
ACCTCGCAACTTATCCAGCCGCAGCACGAGCACACACTTAAAATCATCCG
GGCAAGCCTGAGGGCCGCCAACCCAGCGCCAAACTACGGCAAGGACCAGG
ATGCTGCAGGTCCCTCTTTTCCTCACTTCCATCTATACATATGTTTTTCG
CATTTTTAATCTTCTTCCCTACTTACGCTACGTCCACAGCGAGCTACAGC
GAATGCAATAATGGCCCGCCATGACGAATACCACAACGGGGCCGCCAGCA
GCAGCAGCAGCGGTAGCAGCATCAGCAGCAGCCACAGCAGTAGCAACAAG
AGGGCGCGGAATGGAACGAGTGAACCACAGCAGGATGATCGTACAACTCG
GGCCGCTGCGGCAGCCATTGCCTGTCGTGCTGCTGCTGCTGCTCCTGCTT
CAGCTCGTGGTCCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCT
GCTGTTGCTGCTGCTGCTGTTGCTGCTCCAGCGGCTGCTGCAGGGAGGCA
AGGGGAGGCGAGCAGGGACGCAATTCACTACCATGACATAGCTGGGGACG
CAGGAAAAGACAAGGACGACATACATCGTTCCTGCAGAAAAGAAAAGCAG
GCTCTGCGTTCTGAAATCAGGGTGCTACATGAGCAACACGAAGCCCTCCG
TGCCGAAGTCGCACATCTCCGGAACAAGCTGAAAGAAGCCTTGGGTGATG
TGCCTGTCTGCTCCATCTGCTTGGAGATTGTAAGCTACCCGGTGGAGCTC
CAAGACTGTCGGCATCTGTACTGCTGCGAGTGCTTCTACATGCACGCTAC
CTCCAACACGGCCGGGAATAGGGCCTGTCCCGTGTGTAGGTGTAAGATAA
ATAAAGCGCCGTTGCCCCCGCCTTTGGCATTTATCCAGCACTTGGAGTGG
GTCAAGAAGGAAAAGAGGCGACATGATGAGGAGATGGCAGCAGCAACAGC
AGCAGCAGCTGCTTCAGCGCCCGCACTATTTGCGACGATAGAAAAGAGGG
CAGGTAGTTGTGGTGGTGTTGATGACGATAATGATGATGATGCTGCATCA
GCATCAGCAGGGGCGGTAAGACAAGCAGCAGGTGACGACAAAGATGTGAC
CGATGCTGCTGCTGCTGCTATTGCAGCTGCTGCTACTACAGCTGCTCGTG
TTGCGCGGACCACGTATCAGCTGCAGATGGAGGAGTTGAAGCGGTTGTTT
GACAGGGAAGATAGGCGACGACGGCGGCCTGGAGAAAGGGAGGGAGGAGG
GGCATATGATGATTCGGATGGGGTGTATCGGTGCCCGCGTTGTCATTGGG
AGATGTTGGAGGGACGTTGTGCCCGGGGTTGTGGGGATGGTGAGGACGAG
GGGGAGGAGGAGGAGGATATGTTAGTGGTGGCTGATAGTAGCGAATACGA
ACACGAAGGATTGGCGAGCATGCGGCCGTATCATGATGAGTATTCGAGGA
TGGAGAGAAGGATAGTCGAAACTACACGTCGGATGGAGCAGGGGTCATTT
CAGCCCGACGTCCCTTCTAGTGGTGGTGGTAGCAGTAGGCAGCGTCGACG
ACGAAGGGAAGGAAGGGAAGAAGTGTCAGGGGAACAGGAGGGCGAAGAGG
CAGAGAATGAACTAGGCATTGGCTTCGCTCGCCGGCGACTGCAATGGTTG
CGGCGGCTACAACGTCGGCAAAGAACGGAGGTGGAGGAGGAGGAGGTGGG
AGAAGAAGAGGAAGACGAGGAGGAGAGCGAGGAAGAAGAAGAGAGTGGTT
TAGAGGAGGACGATGGGCGGCCTTCATGGATGGTGGGGCGGCCGCAAATG
TCAAGGCGGTGTCAGCGACAAGAGGAGTATCTTCTCGAAGAGGAGGATAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGG
CGTAATGTGGGGAGAGAAGCTGCTTTGCGGCAACGCGCGCGAGATGAAGA
GGAAGAGGAAGAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGAGAGGAAGAGGAG
GGCAGGGAGGGAGGGAGTTCTGAAGGAGAGGACGGAGAGGACTATAAATA
TGTCGTGAGTGGTAACGAGAGCGAGGTAATTGCATAG

protein sequence of NO04G01620.1

>NO04G01620.1-protein ID=NO04G01620.1-protein|Name=NO04G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=659bp
MARHDEYHNGAASSSSSGSSISSSHSSSNKRARNGTSEPQQDDRTTRAAA
AAIACRAAAAAPASARGPAAAAAAAAAAAAAVAAAAVAAPAAAAGRQGEA
SRDAIHYHDIAGDAGKDKDDIHRSCRKEKQALRSEIRVLHEQHEALRAEV
AHLRNKLKEALGDVPVCSICLEIVSYPVELQDCRHLYCCECFYMHATSNT
AGNRACPVCRCKINKAPLPPPLAFIQHLEWVKKEKRRHDEEMAAATAAAA
ASAPALFATIEKRAGSCGGVDDDNDDDAASASAGAVRQAAGDDKDVTDAA
AAAIAAAATTAARVARTTYQLQMEELKRLFDREDRRRRRPGEREGGGAYD
DSDGVYRCPRCHWEMLEGRCARGCGDGEDEGEEEEDMLVVADSSEYEHEG
LASMRPYHDEYSRMERRIVETTRRMEQGSFQPDVPSSGGGSSRQRRRRRE
GREEVSGEQEGEEAENELGIGFARRRLQWLRRLQRRQRTEVEEEEVGEEE
EDEEESEEEEESGLEEDDGRPSWMVGRPQMSRRCQRQEEYLLEEEDKEEE
EEEEEEEEEEEEEEEEEEGRRQIRGLFRAGRNVGREAALRQRARDEEEEE
EEEEEGEEEEEEEEEEEEEEEEEEEGEEEEGREGGSSEGEDGEDYKYVVS
GNESEVIA*

mRNA from alignment at chr4:489261..491597-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G01620.1 ID=NO04G01620.1|Name=NO04G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2337bp|location=Sequence derived from alignment at chr4:489261..491597- (Nannochloropsis oceanica)
GATGGCAACTCGCCATCGGGCGGACCTCCTCCCCCCCCTTCCTTTCTTAA
GCACATAATGCAAATAATGCCGGAGGACGACGAAAATGCGCAGCCCTGTA
TCTTCTCCTCCCTCCTGTCACTCTTCTTTCAAATTTTCCTTCCACCATCC
ACCTCGCAACTTATCCAGCCGCAGCACGAGCACACACTTAAAATCATCCG
GGCAAGCCTGAGGGCCGCCAACCCAGCGCCAAACTACGGCAAGGACCAGG
ATGCTGCAGGTCCCTCTTTTCCTCACTTCCATCTATACATATGTTTTTCG
CATTTTTAATCTTCTTCCCTACTTACGCTACGTCCACAGCGAGCTACAGC
GAATGCAATAATGGCCCGCCATGACGAATACCACAACGGGGCCGCCAGCA
GCAGCAGCAGCGGTAGCAGCATCAGCAGCAGCCACAGCAGTAGCAACAAG
AGGGCGCGGAATGGAACGAGTGAACCACAGCAGGATGATCGTACAACTCG
GGCCGCTGCGGCAGCCATTGCCTGTCGTGCTGCTGCTGCTGCTCCTGCTT
CAGCTCGTGGTCCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCT
GCTGTTGCTGCTGCTGCTGTTGCTGCTCCAGCGGCTGCTGCAGGGAGGCA
AGGGGAGGCGAGCAGGGACGCAATTCACTACCATGACATAGCTGGGGACG
CAGGAAAAGACAAGGACGACATACATCGTTCCTGCAGAAAAGAAAAGCAG
GCTCTGCGTTCTGAAATCAGGGTGCTACATGAGCAACACGAAGCCCTCCG
TGCCGAAGTCGCACATCTCCGGAACAAGCTGAAAGAAGCCTTGGGTGATG
TGCCTGTCTGCTCCATCTGCTTGGAGATTGTAAGCTACCCGGTGGAGCTC
CAAGACTGTCGGCATCTGTACTGCTGCGAGTGCTTCTACATGCACGCTAC
CTCCAACACGGCCGGGAATAGGGCCTGTCCCGTGTGTAGGTGTAAGATAA
ATAAAGCGCCGTTGCCCCCGCCTTTGGCATTTATCCAGCACTTGGAGTGG
GTCAAGAAGGAAAAGAGGCGACATGATGAGGAGATGGCAGCAGCAACAGC
AGCAGCAGCTGCTTCAGCGCCCGCACTATTTGCGACGATAGAAAAGAGGG
CAGGTAGTTGTGGTGGTGTTGATGACGATAATGATGATGATGCTGCATCA
GCATCAGCAGGGGCGGTAAGACAAGCAGCAGGTGACGACAAAGATGTGAC
CGATGCTGCTGCTGCTGCTATTGCAGCTGCTGCTACTACAGCTGCTCGTG
TTGCGCGGACCACGTATCAGCTGCAGATGGAGGAGTTGAAGCGGTTGTTT
GACAGGGAAGATAGGCGACGACGGCGGCCTGGAGAAAGGGAGGGAGGAGG
GGCATATGATGATTCGGATGGGGTGTATCGGTGCCCGCGTTGTCATTGGG
AGATGTTGGAGGGACGTTGTGCCCGGGGTTGTGGGGATGGTGAGGACGAG
GGGGAGGAGGAGGAGGATATGTTAGTGGTGGCTGATAGTAGCGAATACGA
ACACGAAGGATTGGCGAGCATGCGGCCGTATCATGATGAGTATTCGAGGA
TGGAGAGAAGGATAGTCGAAACTACACGTCGGATGGAGCAGGGGTCATTT
CAGCCCGACGTCCCTTCTAGTGGTGGTGGTAGCAGTAGGCAGCGTCGACG
ACGAAGGGAAGGAAGGGAAGAAGTGTCAGGGGAACAGGAGGGCGAAGAGG
CAGAGAATGAACTAGGCATTGGCTTCGCTCGCCGGCGACTGCAATGGTTG
CGGCGGCTACAACGTCGGCAAAGAACGGAGGTGGAGGAGGAGGAGGTGGG
AGAAGAAGAGGAAGACGAGGAGGAGAGCGAGGAAGAAGAAGAGAGTGGTT
TAGAGGAGGACGATGGGCGGCCTTCATGGATGGTGGGGCGGCCGCAAATG
TCAAGGCGGTGTCAGCGACAAGAGGAGTATCTTCTCGAAGAGGAGGATAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGG
CGTAATGTGGGGAGAGAAGCTGCTTTGCGGCAACGCGCGCGAGATGAAGA
GGAAGAGGAAGAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGAGAGGAAGAGGAG
GGCAGGGAGGGAGGGAGTTCTGAAGGAGAGGACGGAGAGGACTATAAATA
TGTCGTGAGTGGTAACGAGAGCGAGGTAATTGCATAG

Coding sequence (CDS) from alignment at chr4:489261..491597-

>NO04G01620.1 ID=NO04G01620.1|Name=NO04G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=1977bp|location=Sequence derived from alignment at chr4:489261..491597- (Nannochloropsis oceanica)
ATGGCCCGCCATGACGAATACCACAACGGGGCCGCCAGCAGCAGCAGCAG
CGGTAGCAGCATCAGCAGCAGCCACAGCAGTAGCAACAAGAGGGCGCGGA
ATGGAACGAGTGAACCACAGCAGGATGATCGTACAACTCGGGCCGCTGCG
GCAGCCATTGCCTGTCGTGCTGCTGCTGCTGCTCCTGCTTCAGCTCGTGG
TCCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGTTGCTG
CTGCTGCTGTTGCTGCTCCAGCGGCTGCTGCAGGGAGGCAAGGGGAGGCG
AGCAGGGACGCAATTCACTACCATGACATAGCTGGGGACGCAGGAAAAGA
CAAGGACGACATACATCGTTCCTGCAGAAAAGAAAAGCAGGCTCTGCGTT
CTGAAATCAGGGTGCTACATGAGCAACACGAAGCCCTCCGTGCCGAAGTC
GCACATCTCCGGAACAAGCTGAAAGAAGCCTTGGGTGATGTGCCTGTCTG
CTCCATCTGCTTGGAGATTGTAAGCTACCCGGTGGAGCTCCAAGACTGTC
GGCATCTGTACTGCTGCGAGTGCTTCTACATGCACGCTACCTCCAACACG
GCCGGGAATAGGGCCTGTCCCGTGTGTAGGTGTAAGATAAATAAAGCGCC
GTTGCCCCCGCCTTTGGCATTTATCCAGCACTTGGAGTGGGTCAAGAAGG
AAAAGAGGCGACATGATGAGGAGATGGCAGCAGCAACAGCAGCAGCAGCT
GCTTCAGCGCCCGCACTATTTGCGACGATAGAAAAGAGGGCAGGTAGTTG
TGGTGGTGTTGATGACGATAATGATGATGATGCTGCATCAGCATCAGCAG
GGGCGGTAAGACAAGCAGCAGGTGACGACAAAGATGTGACCGATGCTGCT
GCTGCTGCTATTGCAGCTGCTGCTACTACAGCTGCTCGTGTTGCGCGGAC
CACGTATCAGCTGCAGATGGAGGAGTTGAAGCGGTTGTTTGACAGGGAAG
ATAGGCGACGACGGCGGCCTGGAGAAAGGGAGGGAGGAGGGGCATATGAT
GATTCGGATGGGGTGTATCGGTGCCCGCGTTGTCATTGGGAGATGTTGGA
GGGACGTTGTGCCCGGGGTTGTGGGGATGGTGAGGACGAGGGGGAGGAGG
AGGAGGATATGTTAGTGGTGGCTGATAGTAGCGAATACGAACACGAAGGA
TTGGCGAGCATGCGGCCGTATCATGATGAGTATTCGAGGATGGAGAGAAG
GATAGTCGAAACTACACGTCGGATGGAGCAGGGGTCATTTCAGCCCGACG
TCCCTTCTAGTGGTGGTGGTAGCAGTAGGCAGCGTCGACGACGAAGGGAA
GGAAGGGAAGAAGTGTCAGGGGAACAGGAGGGCGAAGAGGCAGAGAATGA
ACTAGGCATTGGCTTCGCTCGCCGGCGACTGCAATGGTTGCGGCGGCTAC
AACGTCGGCAAAGAACGGAGGTGGAGGAGGAGGAGGTGGGAGAAGAAGAG
GAAGACGAGGAGGAGAGCGAGGAAGAAGAAGAGAGTGGTTTAGAGGAGGA
CGATGGGCGGCCTTCATGGATGGTGGGGCGGCCGCAAATGTCAAGGCGGT
GTCAGCGACAAGAGGAGTATCTTCTCGAAGAGGAGGATAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGGCGTAATGTGG
GGAGAGAAGCTGCTTTGCGGCAACGCGCGCGAGATGAAGAGGAAGAGGAA
GAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAAGAAGGAGAGGAAGAGGAGGGCAGGGAGG
GAGGGAGTTCTGAAGGAGAGGACGGAGAGGACTATAAATATGTCGTGAGT
GGTAACGAGAGCGAGGTAATTGCATAG

Synonyms

Publications