NO04G01510.3, NO04G01510.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01510.3
Unique NameNO04G01510.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1570
Alignment locationchr4:467960..469868 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:467960..469868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01510.3 vs.
Match: EWM28534.1 (3 -5 exoribonuclease csl4 [Nannochloropsis gaditana])

HSP 1 Score: 244.2 bits (622), Expect = 3.200e-61
Identity = 123/187 (65.78%), Postives = 148/187 (79.14%), Query Frame = 0 
Query:    1 MDSVAVQDNQSDSLAVPGDRIGRLSSHRAGPGTYAMGSHIYASSLGRVQTVQSDDPAALPILQVLNITKIGGHSSGGTDVVLEVGHVVLTRVLRITSKQAHVEVIAMGRITLRQTCQGIIKKEDVREHEIDRVEIHKCFRPGDLVRARVVSLGDSRQYYLSTAESELGVTYAKSQTHVGEGGGEGEG 188
            MD+V    + SDS+A PGDRIGR+SSH++GPGTY  G HIYAS LG +Q +Q +    LP+L+V N  K     +G  +VVL VGHVV TRVLRITSKQA+VE++A+G + LRQTCQGIIKKEDV +H+IDR+EI +CFRPGD+VRARVVSLGDSRQYYL TAESELGV YA+SQT + EGG EG G
Sbjct:    1 MDTVPSAISPSDSIAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGG 187
The following BLAST results are available for this feature:
BLAST of NO04G01510.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28534.13.200e-6165.783 -5 exoribonuclease csl4 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01510NO04G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01510.3NO04G01510.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01510.3.cds1NO04G01510.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01510.3.cds2NO04G01510.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01510.3.cds3NO04G01510.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01510.3 ID=NO04G01510.3|Name=NO04G01510.3|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp
GAGTTGAGTAAATGCTAGGGACTGTAAGAGGTGGGTGGGGTTTGGTTTGG
GTCGTGTAGAAGGGTGGCTGGGTTCCTTGAGAAGAGAGAGCGGTACTGGA
AAGAGAGACACGCTCTGGGCGGCCATAGCTACGGATCAAGTAACAAAGTA
TGTTTCTGGGCTTAAATAGACTTGGTTGGGACAGGCAATTGGCTGTAGAC
TTCCGGGGGGTACTTTACACACACAAAAAAAGGTACAGGTCAACCCATGT
GCCCACCCCCCCTCCTTTCCACCGTATGCCTCTGTTCTACATACCTCAAA
GCCTGCTGTCAAGGCATAGGAATCGCGCTGGAAAATGCGGCGCAACAGTG
TCAGTGGACTAGCTAGTTCGTCTTCCTCCCCGTCCTCCATGTCCCGCGTC
CCATCCTCGTTCATGACCCACATGCGTCCTTGCGGTATAGGAGGGGCTGA
AGGAAAGGGAGGGGAGGTCGACGACATCGTCAGAGAGAGAGAGAGAGAGC
CGGAAGCAGAAGCGAGAGCAGCAATCTCAAGCTTGCTTGTCTGTCCCTGT
GATTCGGGAATGAAGGATGAAGGAAGAACTGCGTGAGACGGACTCGACGT
ACGTCGTTCGAGAGGAGGGCACGTCAAATGTAAGCAATTGACCTCCTGCC
CATTCCTTGCCTTTTGTCCTGCCTCTAACCCCACACCACACCCACCACGT
CAACCAGCACAGGCTATGGATTCAGTTGCAGTACAGGATAACCAATCTGA
CAGCCTGGCTGTCCCAGGGGACCGCATTGGTCGCCTCTCGTCCCATCGAG
CGGGCCCAGGCACATATGCTATGGGTAGCCACATCTATGCAAGCTCTCTA
GGTCGCGTCCAAACTGTCCAATCCGACGACCCTGCCGCACTCCCCATCCT
CCAAGTCCTCAATATCACGAAGATTGGTGGCCACAGTAGTGGGGGAACAG
ACGTAGTGCTGGAAGTGGGACATGTCGTCCTCACGCGGGTCCTTCGCATC
ACAAGTAAGCAAGCCCACGTTGAAGTAATTGCGATGGGTCGCATCACCCT
GCGACAAACCTGTCAAGGTATTATAAAAAAGGAAGACGTCCGAGAACACG
AAATCGATCGCGTAGAGATCCACAAGTGCTTTCGACCTGGGGATTTAGTG
AGGGCAAGGGTGGTGTCACTAGGAGACAGCAGGCAGTACTATCTTAGCAC
GGCGGAGAGCGAGTTAGGTGTCACGTATGCGAAAAGTCAGACGCATGTTG
GGGAGGGAGGGGGGGAGGGGGAGGGAGCGTGATGGTGCCGGTGAGTTGGG
AGAAGATGGTGGATCCAATAACTAAAGTGACTGAGGACAGGAAGGTCGCC
AAGCCGGTATCGATTGAGAAGAAGGAGGAGGGGGAGGAAGAGATGACGAC
CGGTTGAGGTGGAGAGAGGAGGAAGGAAAGGTAGATTGTACAAAGTGGGG
ACATGAGTGGGGCGTGTTTGGATGACGGCGGATTGGAGGAAAATAAAACG
ACATGTAATTCGTATAAGAGAAGCGAGATTCGAATAAGGATGAAAATGAG
AAAATGGATGGAGGACAGGC
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protein sequence of NO04G01510.3

>NO04G01510.3-protein ID=NO04G01510.3-protein|Name=NO04G01510.3|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MDSVAVQDNQSDSLAVPGDRIGRLSSHRAGPGTYAMGSHIYASSLGRVQT
VQSDDPAALPILQVLNITKIGGHSSGGTDVVLEVGHVVLTRVLRITSKQA
HVEVIAMGRITLRQTCQGIIKKEDVREHEIDRVEIHKCFRPGDLVRARVV
SLGDSRQYYLSTAESELGVTYAKSQTHVGEGGGEGEGA*
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mRNA from alignment at chr4:467960..469868+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01510.3 ID=NO04G01510.3|Name=NO04G01510.3|organism=Nannochloropsis oceanica|type=mRNA|length=1909bp|location=Sequence derived from alignment at chr4:467960..469868+ (Nannochloropsis oceanica)
GAGTTGAGTAAATGCTAGGGACTGTAAGAGGTGGGTGGGGTTTGGTTTGG
GTCGTGTAGAAGGGTGGCTGGGTTCCTTGAGAAGAGAGAGCGGTACTGGA
AAGAGAGACACGCTCTGGGCGGCCATAGCTACGGATCAAGTAACAAAGTA
TGTTTCTGGGCTTAAATAGACTTGGTTGGGACAGGCAATTGGCTGTAGAC
TTCCGGGGGGTACTTTACACACACAAAAAAAGGTACAGGTCAACCCATGT
GCCCACCCCCCCTCCTTTCCACCGTATGCCTCTGTTCTACATACCTCAAA
GCCTGCTGTCAAGGCATAGGAATCGCGCTGGAAAATGCGGCGCAACAGTG
TCAGTGGACTAGCTAGTTCGTCTTCCTCCCCGTCCTCCATGTCCCGCGTC
CCATCCTCGTTCATGACCCACATGCGTCCTTGCGGTATAGGAGGGGCTGA
AGGAAAGGGAGGGGAGGTCGACGACATCGTCAGAGAGAGAGAGAGAGAGC
CGGAAGCAGAAGCGAGAGCAGCAATCTCAAGCTTGCTTGTCTGTCCCTGT
GATTCGGGAATGAAGGATGAAGGAAGAACTGCGTGAGACGGACTCGACGT
ACGTCGTTCGAGAGGAGGGCACGTCAAATGTAAGCAATTGACCTCCTGCC
CATTCCTTGCCTTTTGTCCTGCCTCTAACCCCACACCACACCCACCACGT
CAACCAGCACAGGCTATGGATTCAGTTGCAGTACAGGATAACCAATCTGA
CAGCCTGGCTGTCCCAGGGGACCGCATTGGTCGCCTCTCGTCCCATCGAG
CGGGCCCAGGTACGTCGACGGCGTCGTGCGGTAGGAGGTAGAGCTACCTG
GGCAGTGCTTTTCGAGAGCAGGGCACACAAATATGCCGCTGTACGAGCTG
CAAGATTAAGATTCAAGTAATTCGTAACCGTATGCATTCATGGGAAGGCA
GTGAGGACGCTTTCTCCAATGGCGTCTCTCGCCCGTAATCCACGACTCCC
CGTCTCCACCTCCACCCCACCACCAAACGACAGGCACATATGCTATGGGT
AGCCACATCTATGCAAGCTCTCTAGGTCGCGTCCAAGTATGTAGAATGTA
TTCGAAATGGAATCGCATGGTCCTTTTTTCTCCCAGTGCCTCCACTCACC
CAGCATGACAACCTCATCGCCTTCCATCCCTTCTCCCACCTTACCGCATA
GACTGTCCAATCCGACGACCCTGCCGCACTCCCCATCCTCCAAGTCCTCA
ATATCACGAAGATTGGTGGCCACAGTAGTGGGGGAACAGACGTAGTGCTG
GAAGTGGGACATGTCGTCCTCACGCGGGTCCTTCGCATCACAAGTAAGCA
AGCCCACGTTGAAGTAATTGCGATGGGTCGCATCACCCTGCGACAAACCT
GTCAAGGTATTATAAAAAAGGAAGACGTCCGAGAACACGAAATCGATCGC
GTAGAGATCCACAAGTGCTTTCGACCTGGGGATTTAGTGAGGGCAAGGGT
GGTGTCACTAGGAGACAGCAGGCAGTACTATCTTAGCACGGCGGAGAGCG
AGTTAGGTGTCACGTATGCGAAAAGTCAGACGCATGTTGGGGAGGGAGGG
GGGGAGGGGGAGGGAGCGTGATGGTGCCGGTGAGTTGGGAGAAGATGGTG
GATCCAATAACTAAAGTGACTGAGGACAGGAAGGTCGCCAAGCCGGTATC
GATTGAGAAGAAGGAGGAGGGGGAGGAAGAGATGACGACCGGTTGAGGTG
GAGAGAGGAGGAAGGAAAGGTAGATTGTACAAAGTGGGGACATGAGTGGG
GCGTGTTTGGATGACGGCGGATTGGAGGAAAATAAAACGACATGTAATTC
GTATAAGAGAAGCGAGATTCGAATAAGGATGAAAATGAGAAAATGGATGG
AGGACAGGC
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Coding sequence (CDS) from alignment at chr4:467960..469868+

>NO04G01510.3 ID=NO04G01510.3|Name=NO04G01510.3|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at chr4:467960..469868+ (Nannochloropsis oceanica)
ATGGATTCAGTTGCAGTACAGGATAACCAATCTGACAGCCTGGCTGTCCC
AGGGGACCGCATTGGTCGCCTCTCGTCCCATCGAGCGGGCCCAGGCACAT
ATGCTATGGGTAGCCACATCTATGCAAGCTCTCTAGGTCGCGTCCAAACT
GTCCAATCCGACGACCCTGCCGCACTCCCCATCCTCCAAGTCCTCAATAT
CACGAAGATTGGTGGCCACAGTAGTGGGGGAACAGACGTAGTGCTGGAAG
TGGGACATGTCGTCCTCACGCGGGTCCTTCGCATCACAAGTAAGCAAGCC
CACGTTGAAGTAATTGCGATGGGTCGCATCACCCTGCGACAAACCTGTCA
AGGTATTATAAAAAAGGAAGACGTCCGAGAACACGAAATCGATCGCGTAG
AGATCCACAAGTGCTTTCGACCTGGGGATTTAGTGAGGGCAAGGGTGGTG
TCACTAGGAGACAGCAGGCAGTACTATCTTAGCACGGCGGAGAGCGAGTT
AGGTGTCACGTATGCGAAAAGTCAGACGCATGTTGGGGAGGGAGGGGGGG
AGGGGGAGGGAGCGTGA
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Synonyms
Publications