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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:406825..409231 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01310.1 vs.
Match: EWM28544.1 (leukotriene a4 hydrolase [Nannochloropsis gaditana]) HSP 1 Score: 1053.9 bits (2724), Expect = 2.200e-304 Identity = 525/709 (74.05%), Postives = 598/709 (84.34%), Query Frame = 0
Query: 13 ASDPSSSSSLSATTIDSSRAANQKDKNTLSNYQAVKTQHLKLQLNVDFGRYVLDGWAEHTMVVLQSGAPSSRAIFDTSSGLRVHKAEVNGVEAAFTFGAPHAVFGTPLEVSLAAAGVLHKGNTLIVRIYYTTTPTASACQWLPPAQTAGKKHPYLFTQSQAIHARSIFPCQDAPAVKMTYSARVRVPQWATALMSALRSEEKEFVDGAGCRTYVWEQPVSMPSYLVALAVGDLQSRDISPRCRVWAEPSVVEAARYEFDQTEEFLQHAEALTCDYVWTRYDILCLPPSFPYGGMENPCLTFATPTLLAGDRSLADVIAHEIAHSWTGNLVTNTTWEHFYLNEGWTMWLQRKIMARIHGDPMIFELDAEWLGWPHLEESVAAFKDQMELTALVPDLTGVDPDDAFSSIPYEKGFSLLVRLERIVGTVEFERFAKHYIHTFQYKTVTSAEFKQTLLDFFKQDPRLVSLPWDEIFYEPGLPPKPVYETERLAGPSLALADAWF--EGGREGGKEGGGVFARWTTLQKQIFLERLLGRMEKEGRMMGVPVLEAMDREYQLSSSKNAEIRFRWTVLCLRAGAKFVVGNALDFVTSQGRMKFTRPLYKELYKSKMASSLALEIFKKNAMFYHPICRKMVAADLGLRLASDGTLEEGP---MEGGKKRG----VKDVKWGWGEGCPLSQEAMLLVGVGLGAAMLAGLFVLLRQKRK 713
A++P+S+S S + + RA+N+KD NTLSNY+A+K+QHL+L NVDF R VL+GWAEHTMVVL+ GAP+SRAIFDTSSGL VHK EVNG+EA+F G H VFGTP++VSL G+L KG+ ++VR+YY T PTASACQWLPPAQTAG+K PYLFTQSQAIHARSIFPCQD PAVKMTYSARVRVP WATALMSALR E+KEF++G G R YVW+QPV +PSYLVALAVG+L SRDISPRCRVWAEPSVVEAAR+EF QTEEFLQHAEALT +Y W RYD+LCLPPSFPYGGMENPCLTFATPTLLAGDRSLADV+AHEIAHSWTGNLVTNTTWEHFYLNEGWTMWLQRKIMARIHGDP+ F LDAEWLGWPHLEES+AAFKD LTALVPDL VDPDDAFSS+PYEKGF+LL+RLERIVGT FE+FAKHYI ++YKTVTSA+FK TLL+ F+QDPRLV LPWDEIFY PGLP KP Y+T RL+ PSLALADAW+ +GG E E F W+TLQKQIFLE LL R E EG + VPVLEAMDREY+L+SSKNAEIRFRWT+LCLRAGAKF+V NALDFVTSQGRMKFTRPLYKELYKSKMAS++ALE FKKNAMFYHPICRKMVA DLGL LA DG+LEEGP ++GG G + K W L +EA++++G+G+ A ++ G ++R KRK
Sbjct: 17 ANEPASASLHSPAPV-TDRASNEKDLNTLSNYEAIKSQHLRLHWNVDFERNVLEGWAEHTMVVLEPGAPASRAIFDTSSGLSVHKVEVNGLEASFHKGVSHPVFGTPVKVSLTTVGLLSKGDEVVVRLYYVTAPTASACQWLPPAQTAGQKFPYLFTQSQAIHARSIFPCQDTPAVKMTYSARVRVPHWATALMSALRLEDKEFMEGDGHRMYVWDQPVPIPSYLVALAVGELDSRDISPRCRVWAEPSVVEAARFEFGQTEEFLQHAEALTFEYAWKRYDLLCLPPSFPYGGMENPCLTFATPTLLAGDRSLADVVAHEIAHSWTGNLVTNTTWEHFYLNEGWTMWLQRKIMARIHGDPLFFYLDAEWLGWPHLEESIAAFKDHPGLTALVPDLKDVDPDDAFSSVPYEKGFTLLLRLERIVGTPAFEKFAKHYIRLYKYKTVTSAQFKSTLLEHFEQDPRLVCLPWDEIFYAPGLPLKPAYDTARLSSPSLALADAWYKNKGGLEA--EAHKEFMAWSTLQKQIFLESLLKRTEAEG-PIPVPVLEAMDREYRLTSSKNAEIRFRWTMLCLRAGAKFIVANALDFVTSQGRMKFTRPLYKELYKSKMASAVALETFKKNAMFYHPICRKMVATDLGLCLAPDGSLEEGPTSRVKGGAWAGDLGARQKGKRTWLRVLRLPREAVIVLGLGVTAMLVVGAVTVVRHKRK 721
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01310.1 ID=NO04G01310.1|Name=NO04G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2273bp
ATGGCGAAAAATAAATCGTACGCAGCCGCCGTCTCAGCCTCCGACCCCTC
CTCGTCCTCCTCCCTCTCGGCCACTACTATCGACAGCAGTCGGGCTGCGA
ATCAGAAGGACAAAAACACTTTGAGCAACTACCAAGCCGTCAAGACCCAG
CACCTTAAATTGCAATTAAATGTGGACTTCGGGAGGTACGTCCTGGACGG
CTGGGCGGAGCACACGATGGTCGTTCTGCAGTCAGGTGCCCCCTCCAGCA
GGGCCATCTTCGACACGAGCTCCGGTCTCCGCGTGCATAAAGCCGAAGTT
AATGGCGTGGAAGCTGCCTTTACATTCGGTGCCCCCCATGCCGTGTTTGG
GACTCCGCTCGAGGTATCTCTCGCCGCTGCAGGTGTACTCCACAAAGGCA
ACACCTTGATAGTCCGCATCTACTATACCACCACACCCACCGCCTCAGCC
TGCCAATGGCTGCCCCCCGCCCAGACTGCCGGCAAGAAACACCCTTACCT
CTTCACTCAATCCCAAGCCATCCACGCCCGCTCCATCTTCCCCTGTCAAG
ACGCCCCAGCAGTCAAAATGACGTACTCGGCGCGGGTCCGCGTCCCTCAA
TGGGCGACTGCCTTGATGAGTGCCTTGCGCTCGGAAGAGAAGGAATTCGT
TGATGGGGCTGGATGCCGTACCTATGTGTGGGAGCAGCCCGTGTCGATGC
CTTCTTACCTGGTGGCACTAGCGGTGGGCGATCTGCAAAGTAGGGATATC
AGTCCTCGGTGCAGGGTATGGGCGGAGCCGAGCGTGGTGGAGGCGGCCAG
GTATGAATTTGATCAAACGGAGGAGTTTTTACAGCATGCCGAGGCGTTGA
CGTGTGATTATGTCTGGACGAGATATGACATACTTTGCCTTCCACCTAGC
TTCCCTTATGGGGGCATGGAGAATCCGTGTTTGACTTTTGCGACTCCCAC
GCTGCTGGCGGGGGATAGGAGTCTGGCTGATGTGATTGCGCATGAGATCG
CGCATTCGTGGACCGGGAATCTCGTGACCAACACGACGTGGGAGCATTTT
TATTTGAATGAGGGGTGGACGATGTGGTTGCAGCGGAAGATTATGGCCCG
GATCCACGGCGACCCGATGATTTTTGAGTTGGATGCGGAGTGGTTGGGCT
GGCCGCATTTGGAGGAGTCGGTGGCGGCGTTCAAGGATCAGATGGAACTA
ACAGCTTTGGTGCCAGATCTGACGGGTGTGGATCCCGATGACGCCTTTTC
AAGCATCCCCTATGAGAAAGGGTTCAGCCTGCTGGTACGGTTGGAACGGA
TCGTGGGAACCGTCGAGTTTGAAAGGTTCGCCAAGCATTACATCCACACC
TTTCAGTACAAAACGGTAACGTCCGCGGAGTTCAAGCAGACGTTGCTTGA
TTTTTTCAAACAGGATCCGCGCTTGGTCTCTTTGCCGTGGGATGAAATTT
TTTATGAGCCAGGGCTGCCTCCCAAGCCGGTGTATGAGACAGAAAGGCTG
GCTGGGCCGTCTCTGGCGCTGGCAGATGCGTGGTTTGAGGGAGGGAGGGA
GGGAGGGAAGGAGGGAGGGGGGGTGTTTGCAAGATGGACAACTTTGCAGA
AGCAGATATTTTTGGAGCGGCTGTTAGGGAGGATGGAAAAAGAAGGGAGG
ATGATGGGGGTGCCGGTGCTGGAAGCGATGGATCGAGAGTATCAGTTGAG
CAGTAGTAAGAATGCGGAGATTCGATTCCGATGGACCGTGTTGTGTCTGC
GGGCGGGCGCGAAATTTGTGGTTGGGAATGCTTTGGATTTTGTTACATCA
CAGGGGAGAATGAAATTTACGAGGCCGCTGTACAAGGAGTTATATAAGAG
CAAGATGGCCAGTTCCTTGGCTCTTGAGATATTTAAAAAAAACGCCATGT
TCTACCATCCCATCTGCCGTAAAATGGTGGCAGCTGACCTCGGCCTCCGC
CTTGCCTCCGACGGGACTCTGGAGGAGGGACCGATGGAGGGTGGGAAGAA
GAGAGGAGTGAAAGATGTGAAATGGGGGTGGGGGGAAGGATGCCCGTTGT
CGCAGGAGGCAATGTTGCTGGTGGGTGTGGGATTGGGGGCTGCGATGCTT
GCGGGCTTGTTTGTTTTGTTGCGGCAGAAGCGAAAATGAGCGTGAGTGTG
AATGTGTGAAGGATCAGAGATAATGTTTAAGAGGGAGAGCGAATTTCCAA
AAAAGCAGAGTGCCAAGAACTGAGAGAAATGAGGGGATGAGAAACTTTTG
CTTTTTGGGGGGGGGGGGAAGGG back to topprotein sequence of NO04G01310.1 >NO04G01310.1-protein ID=NO04G01310.1-protein|Name=NO04G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=713bp
MAKNKSYAAAVSASDPSSSSSLSATTIDSSRAANQKDKNTLSNYQAVKTQ
HLKLQLNVDFGRYVLDGWAEHTMVVLQSGAPSSRAIFDTSSGLRVHKAEV
NGVEAAFTFGAPHAVFGTPLEVSLAAAGVLHKGNTLIVRIYYTTTPTASA
CQWLPPAQTAGKKHPYLFTQSQAIHARSIFPCQDAPAVKMTYSARVRVPQ
WATALMSALRSEEKEFVDGAGCRTYVWEQPVSMPSYLVALAVGDLQSRDI
SPRCRVWAEPSVVEAARYEFDQTEEFLQHAEALTCDYVWTRYDILCLPPS
FPYGGMENPCLTFATPTLLAGDRSLADVIAHEIAHSWTGNLVTNTTWEHF
YLNEGWTMWLQRKIMARIHGDPMIFELDAEWLGWPHLEESVAAFKDQMEL
TALVPDLTGVDPDDAFSSIPYEKGFSLLVRLERIVGTVEFERFAKHYIHT
FQYKTVTSAEFKQTLLDFFKQDPRLVSLPWDEIFYEPGLPPKPVYETERL
AGPSLALADAWFEGGREGGKEGGGVFARWTTLQKQIFLERLLGRMEKEGR
MMGVPVLEAMDREYQLSSSKNAEIRFRWTVLCLRAGAKFVVGNALDFVTS
QGRMKFTRPLYKELYKSKMASSLALEIFKKNAMFYHPICRKMVAADLGLR
LASDGTLEEGPMEGGKKRGVKDVKWGWGEGCPLSQEAMLLVGVGLGAAML
AGLFVLLRQKRK* back to topmRNA from alignment at chr4:406825..409231- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01310.1 ID=NO04G01310.1|Name=NO04G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp|location=Sequence derived from alignment at chr4:406825..409231- (Nannochloropsis oceanica)
ATGGCGAAAAATAAATCGTACGCAGCCGCCGTCTCAGCCTCCGACCCCTC
CTCGTCCTCCTCCCTCTCGGCCACTACTATCGACAGCAGTCGGGCTGCGA
ATCAGAAGGACAAAAACACTTTGAGCAACTACCAAGCCGTCAAGACCCAG
CACCTTAAATTGCAATTAAATGTGGACTTCGGGAGGTACGTCCTGGACGG
CTGGGCGGAGCACACGATGGTCGTTCTGCAGTCAGGTGCCCCCTCCAGCA
GGGCCATCTTCGACACGAGCTCCGGTCTCCGCGTGCATAAAGCCGAAGTT
AATGGCGTGGAAGCTGCCTTTACATTCGGTGCCCCCCATGCCGTGTTTGG
GACTCCGCTCGAGGTATCTCTCGCCGCTGCAGGTGTACTCCACAAAGGCA
ACACCTTGATAGTCCGCATCTACTATACCACCACACCCACCGCCTCAGCC
TGCCAATGGCTGCCCCCCGCCCAGACTGCCGGCAAGAAACACCCTTACCT
CTTCACTCAATCCCAAGCCATCCACGCCCGCTCCATCTTCCCCTGTCAAG
ACGCCCCAGCAGTCAAAATGACGTACTCGGCGCGGGTCCGCGTCCCTCAA
TGGGCGACTGCCTTGATGAGTGCCTTGCGCTCGGAAGAGAAGGAATTCGT
TGATGGGGCTGGATGCCGTACCTATGTGTGGGAGCAGCCCGTGTCGATGC
CTTCTTACCTGGTGGCACTAGCGGTGGGCGATCTGCAAAGTAGGGATATC
AGTCCTCGGTGCAGGGTATGGGCGGAGCCGAGCGTGGTGGAGGCGGCCAG
GTATGAATTTGATCAAACGGAGGAGTTTTTACAGCATGCCGAGGCGTTGA
CGTGTGATTATGTCTGGACGAGATATGACATACTTTGCCTTCCACCTAGC
TTCCCTTATGGGGGCATGGAGAATCCGTGTTTGACTTTTGCGACTCCCAC
GCTGCTGGCGGGGGATAGGAGTCTGGCTGATGTGATTGCGCATGAGATCG
CGCATTCGTGGACCGGGAATCTCGTGACCAACACGACGTGGGAGCATTTT
TATTTGAATGAGGGGTGGACGATGTGGTTGCAGCGGAAGATTATGGCCCG
GATCCACGGCGACCCGATGATTTTTGAGTTGGATGCGGAGTGGTTGGGCT
GGCCGCATTTGGAGGAGTCGGTGGCGGCGTTCAAGGATCAGATGGAACTA
ACAGCTTTGGTGCCAGATCTGACGGGTGTGGATCCCGATGACGCCTTTTC
AAGCATCCCCTATGAGAAAGGGTTCAGCCTGCTGGTACGGTTGGAACGGA
TCGTGGGAACCGTCGAGTTTGAAAGGTTCGCCAAGCATTACATCCACACC
TTTCAGTACAAAACGGTAACGTCCGCGGAGTTCAAGCAGACGTTGCTTGA
TTTTTTCAAACAGGATCCGCGCTTGGTCTCTTTGCCGTGGGATGAAATTT
TTTATGAGCCAGGGCTGCCTCCCAAGCCGGTGTATGAGACAGAAAGGCTG
GCTGGGCCGTCTCTGGCGCTGGCAGATGCGTGGTTTGAGGGAGGGAGGGA
GGGAGGGAAGGAGGGAGGGGGGGTGTTTGCAAGATGGACAACTTTGCAGA
AGCAGATATTTTTGGAGCGGCTGTTAGGGAGGATGGAAAAAGAAGGGAGG
ATGATGGGGGTGCCGGTGCTGGAAGCGATGGATCGAGAGTATCAGTTGAG
CAGTAGTAAGAATGCGGAGATTCGATTCCGATGGACCGTGTTGTGTCTGC
GGGCGGGCGCGAAATTTGTGGTTGGGAATGCTTTGGATTTTGTTACATCA
CAGGGGAGAATGAAATTTACGAGGCCGCTGTACAAGGAGTTATATAAGGT
GAGGATTAAGAGGGAGAAAGAGAGAGAGAGGGAGGGAAGGAGGGAAGGCG
GTTGTTCTTGATTTGTTTTTTCTGTACATCATCCTGTCCACTCATTTGTC
TTCCTCCCATCCCTTTACGTACGTACACACAGAGCAAGATGGCCAGTTCC
TTGGCTCTTGAGATATTTAAAAAAAACGCCATGTTCTACCATCCCATCTG
CCGTAAAATGGTGGCAGCTGACCTCGGCCTCCGCCTTGCCTCCGACGGGA
CTCTGGAGGAGGGACCGATGGAGGGTGGGAAGAAGAGAGGAGTGAAAGAT
GTGAAATGGGGGTGGGGGGAAGGATGCCCGTTGTCGCAGGAGGCAATGTT
GCTGGTGGGTGTGGGATTGGGGGCTGCGATGCTTGCGGGCTTGTTTGTTT
TGTTGCGGCAGAAGCGAAAATGAGCGTGAGTGTGAATGTGTGAAGGATCA
GAGATAATGTTTAAGAGGGAGAGCGAATTTCCAAAAAAGCAGAGTGCCAA
GAACTGAGAGAAATGAGGGGATGAGAAACTTTTGCTTTTTGGGGGGGGGG
GGAAGGG back to topCoding sequence (CDS) from alignment at chr4:406825..409231- >NO04G01310.1 ID=NO04G01310.1|Name=NO04G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=2139bp|location=Sequence derived from alignment at chr4:406825..409231- (Nannochloropsis oceanica)
ATGGCGAAAAATAAATCGTACGCAGCCGCCGTCTCAGCCTCCGACCCCTC
CTCGTCCTCCTCCCTCTCGGCCACTACTATCGACAGCAGTCGGGCTGCGA
ATCAGAAGGACAAAAACACTTTGAGCAACTACCAAGCCGTCAAGACCCAG
CACCTTAAATTGCAATTAAATGTGGACTTCGGGAGGTACGTCCTGGACGG
CTGGGCGGAGCACACGATGGTCGTTCTGCAGTCAGGTGCCCCCTCCAGCA
GGGCCATCTTCGACACGAGCTCCGGTCTCCGCGTGCATAAAGCCGAAGTT
AATGGCGTGGAAGCTGCCTTTACATTCGGTGCCCCCCATGCCGTGTTTGG
GACTCCGCTCGAGGTATCTCTCGCCGCTGCAGGTGTACTCCACAAAGGCA
ACACCTTGATAGTCCGCATCTACTATACCACCACACCCACCGCCTCAGCC
TGCCAATGGCTGCCCCCCGCCCAGACTGCCGGCAAGAAACACCCTTACCT
CTTCACTCAATCCCAAGCCATCCACGCCCGCTCCATCTTCCCCTGTCAAG
ACGCCCCAGCAGTCAAAATGACGTACTCGGCGCGGGTCCGCGTCCCTCAA
TGGGCGACTGCCTTGATGAGTGCCTTGCGCTCGGAAGAGAAGGAATTCGT
TGATGGGGCTGGATGCCGTACCTATGTGTGGGAGCAGCCCGTGTCGATGC
CTTCTTACCTGGTGGCACTAGCGGTGGGCGATCTGCAAAGTAGGGATATC
AGTCCTCGGTGCAGGGTATGGGCGGAGCCGAGCGTGGTGGAGGCGGCCAG
GTATGAATTTGATCAAACGGAGGAGTTTTTACAGCATGCCGAGGCGTTGA
CGTGTGATTATGTCTGGACGAGATATGACATACTTTGCCTTCCACCTAGC
TTCCCTTATGGGGGCATGGAGAATCCGTGTTTGACTTTTGCGACTCCCAC
GCTGCTGGCGGGGGATAGGAGTCTGGCTGATGTGATTGCGCATGAGATCG
CGCATTCGTGGACCGGGAATCTCGTGACCAACACGACGTGGGAGCATTTT
TATTTGAATGAGGGGTGGACGATGTGGTTGCAGCGGAAGATTATGGCCCG
GATCCACGGCGACCCGATGATTTTTGAGTTGGATGCGGAGTGGTTGGGCT
GGCCGCATTTGGAGGAGTCGGTGGCGGCGTTCAAGGATCAGATGGAACTA
ACAGCTTTGGTGCCAGATCTGACGGGTGTGGATCCCGATGACGCCTTTTC
AAGCATCCCCTATGAGAAAGGGTTCAGCCTGCTGGTACGGTTGGAACGGA
TCGTGGGAACCGTCGAGTTTGAAAGGTTCGCCAAGCATTACATCCACACC
TTTCAGTACAAAACGGTAACGTCCGCGGAGTTCAAGCAGACGTTGCTTGA
TTTTTTCAAACAGGATCCGCGCTTGGTCTCTTTGCCGTGGGATGAAATTT
TTTATGAGCCAGGGCTGCCTCCCAAGCCGGTGTATGAGACAGAAAGGCTG
GCTGGGCCGTCTCTGGCGCTGGCAGATGCGTGGTTTGAGGGAGGGAGGGA
GGGAGGGAAGGAGGGAGGGGGGGTGTTTGCAAGATGGACAACTTTGCAGA
AGCAGATATTTTTGGAGCGGCTGTTAGGGAGGATGGAAAAAGAAGGGAGG
ATGATGGGGGTGCCGGTGCTGGAAGCGATGGATCGAGAGTATCAGTTGAG
CAGTAGTAAGAATGCGGAGATTCGATTCCGATGGACCGTGTTGTGTCTGC
GGGCGGGCGCGAAATTTGTGGTTGGGAATGCTTTGGATTTTGTTACATCA
CAGGGGAGAATGAAATTTACGAGGCCGCTGTACAAGGAGTTATATAAGAG
CAAGATGGCCAGTTCCTTGGCTCTTGAGATATTTAAAAAAAACGCCATGT
TCTACCATCCCATCTGCCGTAAAATGGTGGCAGCTGACCTCGGCCTCCGC
CTTGCCTCCGACGGGACTCTGGAGGAGGGACCGATGGAGGGTGGGAAGAA
GAGAGGAGTGAAAGATGTGAAATGGGGGTGGGGGGAAGGATGCCCGTTGT
CGCAGGAGGCAATGTTGCTGGTGGGTGTGGGATTGGGGGCTGCGATGCTT
GCGGGCTTGTTTGTTTTGTTGCGGCAGAAGCGAAAATGA back to top
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