NO04G01190.1, NO04G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01190.1
Unique NameNO04G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr4:375463..376536 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:375463..376536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01190.1 vs.
Match: EWM28521.1 (xpa-binding protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 491.5 bits (1264), Expect = 2.200e-135
Identity = 261/329 (79.33%), Postives = 286/329 (86.93%), Query Frame = 0 
Query:   29 PAFRKKPIVLLFMGMAGSGKTTLVQRLNLHLNANGTKSYYVNLDPAVKSVPFAANIDIRDTVNYKEVMNQYELGPNGAIMTSLNLFATRFDQVLTILEKRAPELEYVLVDTPGQIEVFTWSASGAIITEALATSFPTILIYIVDTPRTASPTTFMSNMLYACSILYKTRLPIVLTFNKIDILSHAFAQEWMGDFEKFQEGLDRQGDDMGYSSTLIRSMSLVLDEFYKTLRNVGVSAASGEGVSDFFEAVDEAAREFEREYLPDLVERKEKREGEQEEMKNREMERLMKDLKVEGGGGGGRGGGGEERGGGIEDGGGGGREGGEQIRVEK 358
            P FRKKPIVLLFMGMAGSGKTTLVQRLNL LN+ GTKSYYVNLDPAVKSVPFAANIDIRDTVNYKEVM QYELGPNGAIMTSLNLFATRFDQVL+ILEKRAP+LEYVLVDTPGQIEVFTWSASGAIITEALA+SFPT+L+Y+VDTPRT+SPTTFMSNMLYACSILYKTRLPIVLTFNK DILSH FA +WM DFEKFQEGLDRQG+DMGY STLIRSMSLVLDEFYKTLR VGVSAASG+G+  FF AVDEAA EF R+YLPD++ RK +   E++  + +EM RLMKDL++EG  G G GG GE          GG  EGG+Q+  +K
Sbjct:   57 PPFRKKPIVLLFMGMAGSGKTTLVQRLNLELNSQGTKSYYVNLDPAVKSVPFAANIDIRDTVNYKEVMKQYELGPNGAIMTSLNLFATRFDQVLSILEKRAPDLEYVLVDTPGQIEVFTWSASGAIITEALASSFPTLLVYVVDTPRTSSPTTFMSNMLYACSILYKTRLPIVLTFNKTDILSHTFAVDWMEDFEKFQEGLDRQGEDMGYMSTLIRSMSLVLDEFYKTLRKVGVSAASGDGIDVFFRAVDEAAEEFARDYLPDMLARKAESVREEDGRRGKEMARLMKDLRMEGERGEGGGGEGE----------GGEGEGGKQVEGKK 375
The following BLAST results are available for this feature:
BLAST of NO04G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28521.12.200e-13579.33xpa-binding protein 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01190NO04G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01190.1NO04G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01190.1.cds1NO04G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01190.1 ID=NO04G01190.1|Name=NO04G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ATGAGCAGCACCGATCAGGTATCACCACCACTGCACGTACCGATATCAGT
GTCAGTGCCAGGGAACGACACAGCATCCACCCTGCCCGCCTTCCGCAAGA
AACCCATCGTCCTCCTCTTCATGGGCATGGCGGGCAGCGGCAAGACAACC
CTGGTCCAGCGCCTCAATCTGCATCTCAACGCCAATGGTACCAAAAGCTA
CTATGTGAACCTCGATCCGGCCGTCAAGTCCGTCCCGTTCGCAGCCAATA
TCGACATCCGTGACACGGTCAACTACAAGGAAGTGATGAACCAGTACGAA
CTCGGGCCTAATGGAGCCATCATGACATCCCTCAACCTCTTCGCCACCCG
CTTTGATCAAGTGCTTACTATCCTGGAAAAACGAGCTCCTGAATTGGAAT
ATGTCCTCGTGGACACCCCCGGGCAAATCGAGGTTTTCACTTGGTCAGCC
TCCGGTGCAATCATTACTGAGGCACTCGCTACTTCCTTCCCAACCATCTT
AATTTACATTGTTGATACGCCTCGCACAGCCTCCCCGACCACCTTTATGA
GTAACATGCTCTATGCCTGTTCTATCTTGTATAAGACGCGGTTGCCGATT
GTGTTGACTTTCAATAAGATCGATATTCTGTCACATGCCTTCGCACAGGA
ATGGATGGGAGATTTTGAGAAATTTCAGGAGGGCTTGGATAGGCAAGGGG
ATGACATGGGGTACTCGAGCACGTTGATTCGGTCCATGTCATTAGTGTTA
GATGAATTCTATAAGACACTCAGGAATGTGGGCGTGTCGGCAGCGAGTGG
AGAGGGTGTGAGTGATTTTTTCGAGGCCGTGGATGAGGCGGCGAGGGAGT
TTGAGAGGGAATATTTGCCTGACTTGGTTGAGAGGAAGGAGAAGAGGGAA
GGGGAACAGGAGGAGATGAAAAACAGGGAGATGGAACGATTGATGAAGGA
CTTGAAGGTGGAGGGTGGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAG
AACGGGGGGGGGGGATAGAGGACGGAGGGGGGGGGGGAAGGGAAGGAGGG
GAGCAGATAAGGGTAGAGAAATGA
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protein sequence of NO04G01190.1

>NO04G01190.1-protein ID=NO04G01190.1-protein|Name=NO04G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSSTDQVSPPLHVPISVSVPGNDTASTLPAFRKKPIVLLFMGMAGSGKTT
LVQRLNLHLNANGTKSYYVNLDPAVKSVPFAANIDIRDTVNYKEVMNQYE
LGPNGAIMTSLNLFATRFDQVLTILEKRAPELEYVLVDTPGQIEVFTWSA
SGAIITEALATSFPTILIYIVDTPRTASPTTFMSNMLYACSILYKTRLPI
VLTFNKIDILSHAFAQEWMGDFEKFQEGLDRQGDDMGYSSTLIRSMSLVL
DEFYKTLRNVGVSAASGEGVSDFFEAVDEAAREFEREYLPDLVERKEKRE
GEQEEMKNREMERLMKDLKVEGGGGGGRGGGGEERGGGIEDGGGGGREGG
EQIRVEK*
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mRNA from alignment at chr4:375463..376536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01190.1 ID=NO04G01190.1|Name=NO04G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at chr4:375463..376536+ (Nannochloropsis oceanica)
ATGAGCAGCACCGATCAGGTATCACCACCACTGCACGTACCGATATCAGT
GTCAGTGCCAGGGAACGACACAGCATCCACCCTGCCCGCCTTCCGCAAGA
AACCCATCGTCCTCCTCTTCATGGGCATGGCGGGCAGCGGCAAGACAACC
CTGGTCCAGCGCCTCAATCTGCATCTCAACGCCAATGGTACCAAAAGCTA
CTATGTGAACCTCGATCCGGCCGTCAAGTCCGTCCCGTTCGCAGCCAATA
TCGACATCCGTGACACGGTCAACTACAAGGAAGTGATGAACCAGTACGAA
CTCGGGCCTAATGGAGCCATCATGACATCCCTCAACCTCTTCGCCACCCG
CTTTGATCAAGTGCTTACTATCCTGGAAAAACGAGCTCCTGAATTGGAAT
ATGTCCTCGTGGACACCCCCGGGCAAATCGAGGTTTTCACTTGGTCAGCC
TCCGGTGCAATCATTACTGAGGCACTCGCTACTTCCTTCCCAACCATCTT
AATTTACATTGTTGATACGCCTCGCACAGCCTCCCCGACCACCTTTATGA
GTAACATGCTCTATGCCTGTTCTATCTTGTATAAGACGCGGTTGCCGATT
GTGTTGACTTTCAATAAGATCGATATTCTGTCACATGCCTTCGCACAGGA
ATGGATGGGAGATTTTGAGAAATTTCAGGAGGGCTTGGATAGGCAAGGGG
ATGACATGGGGTACTCGAGCACGTTGATTCGGTCCATGTCATTAGTGTTA
GATGAATTCTATAAGACACTCAGGAATGTGGGCGTGTCGGCAGCGAGTGG
AGAGGGTGTGAGTGATTTTTTCGAGGCCGTGGATGAGGCGGCGAGGGAGT
TTGAGAGGGAATATTTGCCTGACTTGGTTGAGAGGAAGGAGAAGAGGGAA
GGGGAACAGGAGGAGATGAAAAACAGGGAGATGGAACGATTGATGAAGGA
CTTGAAGGTGGAGGGTGGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAG
AACGGGGGGGGGGGATAGAGGACGGAGGGGGGGGGGGAAGGGAAGGAGGG
GAGCAGATAAGGGTAGAGAAATGA
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Coding sequence (CDS) from alignment at chr4:375463..376536+

>NO04G01190.1 ID=NO04G01190.1|Name=NO04G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr4:375463..376536+ (Nannochloropsis oceanica)
ATGAGCAGCACCGATCAGGTATCACCACCACTGCACGTACCGATATCAGT
GTCAGTGCCAGGGAACGACACAGCATCCACCCTGCCCGCCTTCCGCAAGA
AACCCATCGTCCTCCTCTTCATGGGCATGGCGGGCAGCGGCAAGACAACC
CTGGTCCAGCGCCTCAATCTGCATCTCAACGCCAATGGTACCAAAAGCTA
CTATGTGAACCTCGATCCGGCCGTCAAGTCCGTCCCGTTCGCAGCCAATA
TCGACATCCGTGACACGGTCAACTACAAGGAAGTGATGAACCAGTACGAA
CTCGGGCCTAATGGAGCCATCATGACATCCCTCAACCTCTTCGCCACCCG
CTTTGATCAAGTGCTTACTATCCTGGAAAAACGAGCTCCTGAATTGGAAT
ATGTCCTCGTGGACACCCCCGGGCAAATCGAGGTTTTCACTTGGTCAGCC
TCCGGTGCAATCATTACTGAGGCACTCGCTACTTCCTTCCCAACCATCTT
AATTTACATTGTTGATACGCCTCGCACAGCCTCCCCGACCACCTTTATGA
GTAACATGCTCTATGCCTGTTCTATCTTGTATAAGACGCGGTTGCCGATT
GTGTTGACTTTCAATAAGATCGATATTCTGTCACATGCCTTCGCACAGGA
ATGGATGGGAGATTTTGAGAAATTTCAGGAGGGCTTGGATAGGCAAGGGG
ATGACATGGGGTACTCGAGCACGTTGATTCGGTCCATGTCATTAGTGTTA
GATGAATTCTATAAGACACTCAGGAATGTGGGCGTGTCGGCAGCGAGTGG
AGAGGGTGTGAGTGATTTTTTCGAGGCCGTGGATGAGGCGGCGAGGGAGT
TTGAGAGGGAATATTTGCCTGACTTGGTTGAGAGGAAGGAGAAGAGGGAA
GGGGAACAGGAGGAGATGAAAAACAGGGAGATGGAACGATTGATGAAGGA
CTTGAAGGTGGAGGGTGGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAG
AACGGGGGGGGGGGATAGAGGACGGAGGGGGGGGGGGAAGGGAAGGAGGG
GAGCAGATAAGGGTAGAGAAATGA
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Synonyms
Publications