NO04G01070.1, NO04G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01070.1
Unique NameNO04G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2310
Alignment locationchr4:340171..342597 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:340171..342597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01070.1 vs.
Match: EWM28519.1 (apoptosis inducing factor [Nannochloropsis gaditana])

HSP 1 Score: 1001.9 bits (2589), Expect = 8.100e-289
Identity = 521/583 (89.37%), Postives = 535/583 (91.77%), Query Frame = 0 
Query:    1 MLRVLFPRQTAASSQTV-----RLVLAASLSSSSSVSSSRPSQAARPRRSVSSRWSTG--ARSALAATGALVTAGMAVALCETEEINDERSL--TGAVEGVPIKADLTNQEYKLARQNTTRKVKNHYQYVIMGAGTTAYAAIETIFNRQPQADILLISNEAALPQPDVFRHHALSAPLLHSYNEWRRHTTSKLESEPDAISSAPITLLLNNEKSLQLDVDKQRILLQDGSYITYDRCLIATAGKDRGLWAVDRRKISYSLRDRINTCSTIYDFEQLDSLHNIMANKHVSVVGGGFLGTELALALAVRGRETGMTVSQIYAEKGPLCRYIPNYLGMHVQRLLHGAGVRYVNERLVTDVKDGGEDAPGALRISLMGWNKESIYTDYAVLAPTHVEPCVEVAVKSGLELDGSTNGIAVNQQLEAVGNVFVAGGVASYYDAALGRRRVEMFDHSINSGILAGKNMTADEQRPKRRYTHQPMYRSLLKDIDVVCDVVGEIDSKMHTVGIWVNNPVETEDEAETYQRGIIYYLRENRIRGIMLWNASDYLERAREVINAQPNIHNVDMLKRQIALAPDAWLRVLETSAD 575
            MLR +FPR    S  T      R VL ASLSS+SS    RP Q   P  S  SRW T   A + L A  AL  A  AVA CETEEINDER++  TGAVEGVPIKADLTNQEYKLARQNTTRKVKNHYQYVIMGAGTTAYAAIETIFNRQPQADILLISNEAALPQPDVFRHHALSAPLLHSYNEWRRHTTSKLESEPDAISSAPITLLLNNEKSLQLDVDKQRILLQDGSYITYDRCLIATAGKDRGLWAVDRRKISYSLRDRINTCSTIYDFEQLDSLHNIMANKHVSVVGGGFLGTELALALAVRGRETGMTVSQIYAEKGPLCRYIPNYLGMHVQRLLHGAGVRYVNERLVTDVKDGG+DAPGALRISLMGWNKE+IYTDYAVLAPTHVEPCV+VAVKSGLELD +TNGIAVNQQLEAVGNVFVAGGVASYYDAALGRRRVEMFDHSINSGILAGKNMTADE+RPKRRYTHQPMYRSLLKDIDVVCDVVGEIDSKMHTVGIWVNNPVETEDE ETYQRGIIYY+RENRIRGIMLWNASDYLERAREV+NAQ NI NV MLKRQIALAPDAWLRV+ET+AD
Sbjct:   41 MLRAIFPRALLISPLTASVRLSRQVLVASLSSASS----RPGQGQLPPSS--SRWLTAKQATTVLTAVTALSAAAAAVAWCETEEINDERAMPVTGAVEGVPIKADLTNQEYKLARQNTTRKVKNHYQYVIMGAGTTAYAAIETIFNRQPQADILLISNEAALPQPDVFRHHALSAPLLHSYNEWRRHTTSKLESEPDAISSAPITLLLNNEKSLQLDVDKQRILLQDGSYITYDRCLIATAGKDRGLWAVDRRKISYSLRDRINTCSTIYDFEQLDSLHNIMANKHVSVVGGGFLGTELALALAVRGRETGMTVSQIYAEKGPLCRYIPNYLGMHVQRLLHGAGVRYVNERLVTDVKDGGDDAPGALRISLMGWNKENIYTDYAVLAPTHVEPCVDVAVKSGLELDANTNGIAVNQQLEAVGNVFVAGGVASYYDAALGRRRVEMFDHSINSGILAGKNMTADERRPKRRYTHQPMYRSLLKDIDVVCDVVGEIDSKMHTVGIWVNNPVETEDETETYQRGIIYYMRENRIRGIMLWNASDYLERAREVLNAQTNIANVAMLKRQIALAPDAWLRVMETAAD 617
The following BLAST results are available for this feature:
BLAST of NO04G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28519.18.100e-28989.37apoptosis inducing factor [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01070NO04G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01070.1NO04G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01070.1.cds1NO04G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01070.1.cds2NO04G01070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01070.1 ID=NO04G01070.1|Name=NO04G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2310bp
AAACACTCACAGGGTCGTCAACAAGCACCTCGTCGCACAACACACATGCT
CCGCGTGCTTTTCCCTCGGCAGACAGCAGCGTCGTCGCAGACGGTGCGCC
TGGTGCTTGCCGCGTCCTTGTCCTCGTCCTCGTCTGTGTCATCTTCAAGG
CCAAGTCAAGCGGCCCGTCCCCGCCGTTCTGTTAGTTCCCGCTGGTCCAC
AGGTGCCAGGTCCGCGTTGGCTGCAACGGGTGCGTTAGTGACGGCAGGGA
TGGCCGTGGCATTGTGCGAGACCGAGGAGATCAATGACGAAAGGTCCTTG
ACGGGGGCCGTTGAGGGCGTGCCAATCAAAGCTGACCTGACCAACCAAGA
ATACAAACTCGCCCGGCAAAACACAACGCGCAAGGTCAAGAATCACTACC
AGTACGTGATTATGGGGGCGGGAACGACGGCATATGCAGCCATCGAGACC
ATTTTTAACCGCCAGCCCCAAGCTGATATTTTGCTAATTTCCAACGAGGC
CGCCTTGCCCCAACCGGACGTCTTCCGGCATCACGCCCTCTCCGCGCCGC
TCCTTCACTCCTACAACGAATGGCGCCGTCACACTACCTCCAAGCTCGAG
TCGGAACCCGACGCCATATCTTCTGCTCCCATAACTTTGCTGCTCAACAA
CGAAAAAAGCCTGCAGCTGGACGTAGACAAGCAACGCATCCTCCTGCAAG
ATGGCTCATACATCACCTACGACCGCTGCCTCATCGCCACCGCTGGCAAG
GACCGAGGTCTCTGGGCGGTGGATCGTCGTAAGATCTCCTATTCTTTGCG
TGATCGAATCAATACCTGCAGTACCATCTACGATTTCGAGCAGCTGGACA
GTCTCCATAATATTATGGCGAACAAGCACGTGTCTGTTGTGGGAGGCGGG
TTTCTGGGCACGGAGCTGGCGTTGGCTTTGGCAGTGCGGGGGCGGGAAAC
AGGGATGACGGTCTCTCAGATCTATGCGGAGAAGGGGCCCTTGTGTCGAT
ACATTCCAAATTATTTAGGGATGCACGTGCAACGGCTTTTGCATGGCGCG
GGAGTAAGATATGTGAATGAACGGTTGGTCACGGATGTGAAGGATGGGGG
TGAGGATGCCCCCGGGGCGCTGAGGATCTCGTTGATGGGCTGGAATAAGG
AGAGTATATACACGGATTACGCGGTATTGGCGCCGACGCACGTGGAGCCA
TGCGTGGAGGTGGCCGTGAAGAGTGGGCTGGAGCTGGACGGTTCGACCAA
CGGGATCGCGGTGAATCAGCAATTGGAGGCTGTGGGTAATGTGTTCGTTG
CAGGGGGGGTGGCCAGTTACTACGATGCGGCGTTGGGGAGGCGGAGGGTC
GAGATGTTTGACCACTCGATCAACAGTGGGATTTTGGCGGGAAAGAATAT
GACAGCGGATGAGCAGCGGCCAAAGAGACGGTATACGCATCAGCCGATGT
ACCGGAGTTTATTGAAGGATATTGACGTGGTTTGTGATGTGGTTGGCGAA
ATCGACTCGAAGATGCACACGGTGGGGATATGGGTGAATAACCCGGTGGA
GACGGAGGATGAGGCGGAGACGTACCAGCGCGGCATCATTTATTACTTGC
GCGAGAATCGCATCCGAGGCATCATGCTCTGGAACGCCAGTGATTACTTA
GAACGCGCTCGGGAGGTAATCAATGCTCAGCCCAACATCCATAACGTGGA
TATGTTGAAGAGGCAGATTGCCTTGGCCCCCGATGCCTGGCTGCGAGTGC
TGGAGACATCGGCCGATTAGAAGAAGGAGGGAGGGAGGGAGGGAGCGAGG
GAGAGTTGCCTTTGGAAGTGAAAGCACAATGCTCGTTCTTGGGAAAGAAA
GATGGGGTGAAGGATGGAGGGGGGGGTAGGGAGGGAGGGTAGGAGCATTA
CTATTTTGTGCATACGAATAGACGCGACAAGCACTTTTGTCCTTCCTTTT
TCCGCCCTCAGGCGTGAGCGAGGGATGAAAAGGGTTGAAGCGTGTCTCTG
TCGCACTTCAAGCAGCAGCAGCAGCAGCAGTTGAAGCTTTGGTAGGATAA
TGATCTTTTTCCTTGAGATGGAGAGAGAGGCCGACGAGTGAGATGCCCTC
AAGAAGTATAAGGGCGTTGGCTTCAGCAGCAGCAGCAGCAGCAGCAGCAA
GGCAGGGAATTAAATGCGTTAAAAGACAGAGAAACCCAGAGAGCAGTGCT
CTCATAATTTAACAACAGGCAAAGCAAGAGGAGACAGCGCGAGAGGCGAC
ACAGAAGAAAAGAAACAAGAATAACAACCTCATGTAATCATCACCACACA
GACGACCACC
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protein sequence of NO04G01070.1

>NO04G01070.1-protein ID=NO04G01070.1-protein|Name=NO04G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=575bp
MLRVLFPRQTAASSQTVRLVLAASLSSSSSVSSSRPSQAARPRRSVSSRW
STGARSALAATGALVTAGMAVALCETEEINDERSLTGAVEGVPIKADLTN
QEYKLARQNTTRKVKNHYQYVIMGAGTTAYAAIETIFNRQPQADILLISN
EAALPQPDVFRHHALSAPLLHSYNEWRRHTTSKLESEPDAISSAPITLLL
NNEKSLQLDVDKQRILLQDGSYITYDRCLIATAGKDRGLWAVDRRKISYS
LRDRINTCSTIYDFEQLDSLHNIMANKHVSVVGGGFLGTELALALAVRGR
ETGMTVSQIYAEKGPLCRYIPNYLGMHVQRLLHGAGVRYVNERLVTDVKD
GGEDAPGALRISLMGWNKESIYTDYAVLAPTHVEPCVEVAVKSGLELDGS
TNGIAVNQQLEAVGNVFVAGGVASYYDAALGRRRVEMFDHSINSGILAGK
NMTADEQRPKRRYTHQPMYRSLLKDIDVVCDVVGEIDSKMHTVGIWVNNP
VETEDEAETYQRGIIYYLRENRIRGIMLWNASDYLERAREVINAQPNIHN
VDMLKRQIALAPDAWLRVLETSAD*
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mRNA from alignment at chr4:340171..342597+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01070.1 ID=NO04G01070.1|Name=NO04G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2427bp|location=Sequence derived from alignment at chr4:340171..342597+ (Nannochloropsis oceanica)
AAACACTCACAGGGTCGTCAACAAGCACCTCGTCGCACAACACACATGCT
CCGCGTGCTTTTCCCTCGGCAGACAGCAGCGTCGTCGCAGACGGTGCGCC
TGGTGCTTGCCGCGTCCTTGTCCTCGTCCTCGTCTGTGTCATCTTCAAGG
CCAAGTCAAGCGGCCCGTCCCCGCCGTTCTGTTAGTTCCCGCTGGTCCAC
AGGTGCCAGGTCCGCGTTGGCTGCAACGGGTGCGTTAGTGACGGCAGGGA
TGGCCGTGGCATTGTGCGAGACCGAGGAGATCAATGACGAAAGGTCCTTG
ACGGGGGCCGTTGAGGGCGTGCCAATCAAAGCTGACCTGACCAACCAAGA
ATACAAACTCGCCCGGCAAAACACAACGCGCAAGGTCAAGAATCACTACC
AGTACGTGATTATGGGGGCGGGAACGACGGCATATGCAGCCATCGAGACC
ATTTTTAACCGCCAGCCCCAAGCTGATATTTTGCTAATTTCCAACGAGGC
CGCCTTGCCCCAACCGGACGTCTTCCGGCATCACGCCCTCTCCGCGCCGC
TCCTTCACTCCTACAACGAATGGCGCCGTCACACTACCTCCAAGCTCGAG
TCGGAACCCGACGCCATATCTTCTGCTCCCATAACTTTGCTGCTCAACAA
CGAAAAAAGCCTGCAGCTGGACGTAGACAAGCAACGCATCCTCCTGCAAG
ATGGCTCATACATCACCTACGACCGCTGCCTCATCGCCACCGCTGGCAAG
GACCGAGGTCTCTGGGCGGTGGATCGTCGTAAGATCTCCTATTCTTTGCG
TGATCGAATCAATACCTGCAGTACCATCTACGATTTCGAGCAGCTGGACA
GTCTCCATAATATTATGGCGAACAAGCACGTGTCTGTTGTGGGAGGCGGG
TTTCTGGGCACGGAGCTGGCGTTGGCTTTGGCAGTGCGGGGGCGGGAAAC
AGGGATGACGGTCTCTCAGATCTATGCGGAGAAGGGGCCCTTGTGTCGAT
ACATTCCAAATTATTTAGGGATGCACGTGCAACGGCTTTTGCATGGCGCG
GGAGTAAGATATGTGAATGAACGGTTGGTCACGGATGTGAAGGATGGGGG
TGAGGATGCCCCCGGGGCGCTGAGGATCTCGTTGATGGGCTGGAATAAGG
AGAGTATATACACGGATTACGCGGTATTGGCGCCGACGCACGTGGAGCCA
TGCGTGGAGGTGGCCGTGAAGAGTGGGCTGGAGCTGGACGGTTCGACCAA
CGGGATCGCGGTGAATCAGCAATTGGAGGCTGTGGGTAATGTGTTCGTTG
CAGGGGGGGTGGCCAGTTACTACGATGCGGCGTTGGGGAGGCGGAGGGTC
GAGATGTTTGACCACTCGATCAACAGTGGGATTTTGGCGGGAAAGAATAT
GACAGCGGATGAGCAGCGGCCAAAGAGACGGTATACGCATCAGCCGATGT
ACCGGAGTTTATTGAAGGATATTGACGTGGTTTGTGATGTGGTTGGCGAA
ATCGACTCGAAGATGCACACGGTGGGGATATGGGTGAATAACCCGGTGGA
GACGGAGGATGAGGCGGAGACGTACCAGCGCGGCATCATTTATTACTTGC
GCGAGAATCGGTGAGCAGGAGTAGGTCGGCCTTCATGCCTTGCACAAGAC
ATTTGTAACTCACTTTCCCTACCTCTCACCCTCCCTCCCTCCCTCCCCCC
GTCCCCCCTCCCTTCCTCTCTCCCCAGCATCCGAGGCATCATGCTCTGGA
ACGCCAGTGATTACTTAGAACGCGCTCGGGAGGTAATCAATGCTCAGCCC
AACATCCATAACGTGGATATGTTGAAGAGGCAGATTGCCTTGGCCCCCGA
TGCCTGGCTGCGAGTGCTGGAGACATCGGCCGATTAGAAGAAGGAGGGAG
GGAGGGAGGGAGCGAGGGAGAGTTGCCTTTGGAAGTGAAAGCACAATGCT
CGTTCTTGGGAAAGAAAGATGGGGTGAAGGATGGAGGGGGGGGTAGGGAG
GGAGGGTAGGAGCATTACTATTTTGTGCATACGAATAGACGCGACAAGCA
CTTTTGTCCTTCCTTTTTCCGCCCTCAGGCGTGAGCGAGGGATGAAAAGG
GTTGAAGCGTGTCTCTGTCGCACTTCAAGCAGCAGCAGCAGCAGCAGTTG
AAGCTTTGGTAGGATAATGATCTTTTTCCTTGAGATGGAGAGAGAGGCCG
ACGAGTGAGATGCCCTCAAGAAGTATAAGGGCGTTGGCTTCAGCAGCAGC
AGCAGCAGCAGCAGCAAGGCAGGGAATTAAATGCGTTAAAAGACAGAGAA
ACCCAGAGAGCAGTGCTCTCATAATTTAACAACAGGCAAAGCAAGAGGAG
ACAGCGCGAGAGGCGACACAGAAGAAAAGAAACAAGAATAACAACCTCAT
GTAATCATCACCACACAGACGACCACC
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Coding sequence (CDS) from alignment at chr4:340171..342597+

>NO04G01070.1 ID=NO04G01070.1|Name=NO04G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=1725bp|location=Sequence derived from alignment at chr4:340171..342597+ (Nannochloropsis oceanica)
ATGCTCCGCGTGCTTTTCCCTCGGCAGACAGCAGCGTCGTCGCAGACGGT
GCGCCTGGTGCTTGCCGCGTCCTTGTCCTCGTCCTCGTCTGTGTCATCTT
CAAGGCCAAGTCAAGCGGCCCGTCCCCGCCGTTCTGTTAGTTCCCGCTGG
TCCACAGGTGCCAGGTCCGCGTTGGCTGCAACGGGTGCGTTAGTGACGGC
AGGGATGGCCGTGGCATTGTGCGAGACCGAGGAGATCAATGACGAAAGGT
CCTTGACGGGGGCCGTTGAGGGCGTGCCAATCAAAGCTGACCTGACCAAC
CAAGAATACAAACTCGCCCGGCAAAACACAACGCGCAAGGTCAAGAATCA
CTACCAGTACGTGATTATGGGGGCGGGAACGACGGCATATGCAGCCATCG
AGACCATTTTTAACCGCCAGCCCCAAGCTGATATTTTGCTAATTTCCAAC
GAGGCCGCCTTGCCCCAACCGGACGTCTTCCGGCATCACGCCCTCTCCGC
GCCGCTCCTTCACTCCTACAACGAATGGCGCCGTCACACTACCTCCAAGC
TCGAGTCGGAACCCGACGCCATATCTTCTGCTCCCATAACTTTGCTGCTC
AACAACGAAAAAAGCCTGCAGCTGGACGTAGACAAGCAACGCATCCTCCT
GCAAGATGGCTCATACATCACCTACGACCGCTGCCTCATCGCCACCGCTG
GCAAGGACCGAGGTCTCTGGGCGGTGGATCGTCGTAAGATCTCCTATTCT
TTGCGTGATCGAATCAATACCTGCAGTACCATCTACGATTTCGAGCAGCT
GGACAGTCTCCATAATATTATGGCGAACAAGCACGTGTCTGTTGTGGGAG
GCGGGTTTCTGGGCACGGAGCTGGCGTTGGCTTTGGCAGTGCGGGGGCGG
GAAACAGGGATGACGGTCTCTCAGATCTATGCGGAGAAGGGGCCCTTGTG
TCGATACATTCCAAATTATTTAGGGATGCACGTGCAACGGCTTTTGCATG
GCGCGGGAGTAAGATATGTGAATGAACGGTTGGTCACGGATGTGAAGGAT
GGGGGTGAGGATGCCCCCGGGGCGCTGAGGATCTCGTTGATGGGCTGGAA
TAAGGAGAGTATATACACGGATTACGCGGTATTGGCGCCGACGCACGTGG
AGCCATGCGTGGAGGTGGCCGTGAAGAGTGGGCTGGAGCTGGACGGTTCG
ACCAACGGGATCGCGGTGAATCAGCAATTGGAGGCTGTGGGTAATGTGTT
CGTTGCAGGGGGGGTGGCCAGTTACTACGATGCGGCGTTGGGGAGGCGGA
GGGTCGAGATGTTTGACCACTCGATCAACAGTGGGATTTTGGCGGGAAAG
AATATGACAGCGGATGAGCAGCGGCCAAAGAGACGGTATACGCATCAGCC
GATGTACCGGAGTTTATTGAAGGATATTGACGTGGTTTGTGATGTGGTTG
GCGAAATCGACTCGAAGATGCACACGGTGGGGATATGGGTGAATAACCCG
GTGGAGACGGAGGATGAGGCGGAGACGTACCAGCGCGGCATCATTTATTA
CTTGCGCGAGAATCGCATCCGAGGCATCATGCTCTGGAACGCCAGTGATT
ACTTAGAACGCGCTCGGGAGGTAATCAATGCTCAGCCCAACATCCATAAC
GTGGATATGTTGAAGAGGCAGATTGCCTTGGCCCCCGATGCCTGGCTGCG
AGTGCTGGAGACATCGGCCGATTAG
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Synonyms
Publications