NO04G00960.1, NO04G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00960.1
Unique NameNO04G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1005
Alignment locationchr4:308242..309246 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:308242..309246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00960.1 vs.
Match: EWM28460.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 323.9 bits (829), Expect = 5.700e-85
Identity = 193/337 (57.27%), Postives = 225/337 (66.77%), Query Frame = 0 
Query:    7 PPLPPPPFLSFSLPLFLLLQIILDAATAFLLP----LPTHPPRLRQPFPP------PYATTTSSPNNNNDDVSPCLPTSSSFTYSSSIPTRTRLCVRPANKADLRRVATMQVAEYGGDGILFFWHYLQELDRLQTSYWVEPVRHTMLVLVDDSSSSPSSLSPSSSSFPFSPLSVALRALDNFFLGDPRIVGFVDLDARERRVDKTTPDPYLSDLIVDASRRGQGLGKALMLEAEAEAERWGFPAVYLKVRKNNARGYGLYASLGYQVLWEWPGEGVWLMRKWVMDEGEEAREEAEKKEREDCQMMVGTVMMPCMNWV--EGEVKDVVEGRKEEGVKD 332
            PPL  P     ++ L L L    D A AF  P    LP+ P  + Q   P      P  T T+S NNN   +   + + S    S+    ++RL VRPANKADLRRVATMQV EYGG GIL+ WHYLQELDRLQTSYW++P  HTMLV VD   S+PS+         F P S   ++ D F+ GDPRIVGFVDLDAR+RRVDKTTP PYLSDLIV+ SRRGQGLG+ LM  AE EA RWG+PAVYLKVRK NARG+GLYASLGY+VLWEWPGE VW+MRKWV+D  EE R+EA KKERE  + MVG VMMP M W   EG  K+  E  KE G ++
Sbjct:   13 PPLTHP---LRAVLLLLFLHCRRDVALAFRFPGNPFLPSAPRSVPQGHSPRPRSLVPSCTATTSSNNNPHSLPDDVASPSVKPSSAPCLPQSRLSVRPANKADLRRVATMQVTEYGGQGILYLWHYLQELDRLQTSYWIDPFHHTMLVAVD---STPSA---------FRPFSRIFQSWDAFWGGDPRIVGFVDLDARDRRVDKTTPTPYLSDLIVEGSRRGQGLGRQLMEAAEDEARRWGYPAVYLKVRKCNARGFGLYASLGYEVLWEWPGERVWMMRKWVVD--EEDRKEAVKKEREGWEGMVGAVMMPFMTWAGEEGGGKEGGEEGKEVGTEN 332
The following BLAST results are available for this feature:
BLAST of NO04G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28460.15.700e-8557.27gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00960NO04G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00960.1NO04G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00960.1.cds1NO04G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00960.1 ID=NO04G00960.1|Name=NO04G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1005bp
ATGACGAAAAGGACACGGCCGCCACTACCTCCACCCCCTTTCCTGTCCTT
CTCCCTCCCCCTCTTCCTCCTCCTACAAATCATTTTAGACGCCGCCACCG
CCTTCCTCCTCCCTCTCCCCACCCACCCTCCCCGCCTACGACAGCCCTTC
CCGCCACCTTACGCCACCACTACCTCCTCGCCAAATAACAACAACGACGA
CGTCTCTCCCTGCCTCCCCACATCATCCTCCTTCACCTATTCCTCCTCCA
TTCCCACCCGCACCCGTCTCTGTGTCCGTCCCGCCAACAAGGCGGACCTA
CGGCGCGTGGCCACCATGCAAGTTGCCGAGTACGGCGGAGACGGTATTCT
TTTCTTCTGGCACTATTTACAAGAACTCGATCGGCTTCAAACTTCTTATT
GGGTCGAGCCCGTGCGACACACAATGCTTGTCCTTGTCGACGACTCCTCT
TCCTCCCCCTCCTCCCTCTCTCCCTCCTCCTCATCATTCCCCTTTTCCCC
CCTCTCTGTGGCCCTCCGTGCGCTCGACAACTTTTTCCTAGGCGACCCGC
GCATTGTGGGCTTCGTGGACTTGGATGCACGGGAGCGCCGCGTGGACAAA
ACCACCCCCGACCCCTACCTCTCCGATTTAATCGTTGACGCCTCTCGACG
CGGCCAAGGACTAGGGAAGGCCTTGATGCTCGAGGCAGAGGCGGAGGCGG
AGAGGTGGGGCTTTCCAGCAGTGTATTTAAAGGTCCGAAAAAATAACGCA
CGGGGATATGGGTTGTACGCGTCGCTGGGGTACCAGGTGCTGTGGGAGTG
GCCTGGGGAAGGGGTGTGGTTGATGAGGAAGTGGGTAATGGATGAGGGGG
AAGAAGCACGGGAGGAGGCGGAGAAGAAAGAGAGGGAGGACTGTCAGATG
ATGGTGGGGACAGTGATGATGCCATGTATGAATTGGGTGGAAGGGGAGGT
GAAAGACGTGGTGGAGGGAAGGAAAGAGGAGGGGGTGAAGGATGAGGGGG
AGTAG
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protein sequence of NO04G00960.1

>NO04G00960.1-protein ID=NO04G00960.1-protein|Name=NO04G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MTKRTRPPLPPPPFLSFSLPLFLLLQIILDAATAFLLPLPTHPPRLRQPF
PPPYATTTSSPNNNNDDVSPCLPTSSSFTYSSSIPTRTRLCVRPANKADL
RRVATMQVAEYGGDGILFFWHYLQELDRLQTSYWVEPVRHTMLVLVDDSS
SSPSSLSPSSSSFPFSPLSVALRALDNFFLGDPRIVGFVDLDARERRVDK
TTPDPYLSDLIVDASRRGQGLGKALMLEAEAEAERWGFPAVYLKVRKNNA
RGYGLYASLGYQVLWEWPGEGVWLMRKWVMDEGEEAREEAEKKEREDCQM
MVGTVMMPCMNWVEGEVKDVVEGRKEEGVKDEGE*
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mRNA from alignment at chr4:308242..309246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00960.1 ID=NO04G00960.1|Name=NO04G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1005bp|location=Sequence derived from alignment at chr4:308242..309246+ (Nannochloropsis oceanica)
ATGACGAAAAGGACACGGCCGCCACTACCTCCACCCCCTTTCCTGTCCTT
CTCCCTCCCCCTCTTCCTCCTCCTACAAATCATTTTAGACGCCGCCACCG
CCTTCCTCCTCCCTCTCCCCACCCACCCTCCCCGCCTACGACAGCCCTTC
CCGCCACCTTACGCCACCACTACCTCCTCGCCAAATAACAACAACGACGA
CGTCTCTCCCTGCCTCCCCACATCATCCTCCTTCACCTATTCCTCCTCCA
TTCCCACCCGCACCCGTCTCTGTGTCCGTCCCGCCAACAAGGCGGACCTA
CGGCGCGTGGCCACCATGCAAGTTGCCGAGTACGGCGGAGACGGTATTCT
TTTCTTCTGGCACTATTTACAAGAACTCGATCGGCTTCAAACTTCTTATT
GGGTCGAGCCCGTGCGACACACAATGCTTGTCCTTGTCGACGACTCCTCT
TCCTCCCCCTCCTCCCTCTCTCCCTCCTCCTCATCATTCCCCTTTTCCCC
CCTCTCTGTGGCCCTCCGTGCGCTCGACAACTTTTTCCTAGGCGACCCGC
GCATTGTGGGCTTCGTGGACTTGGATGCACGGGAGCGCCGCGTGGACAAA
ACCACCCCCGACCCCTACCTCTCCGATTTAATCGTTGACGCCTCTCGACG
CGGCCAAGGACTAGGGAAGGCCTTGATGCTCGAGGCAGAGGCGGAGGCGG
AGAGGTGGGGCTTTCCAGCAGTGTATTTAAAGGTCCGAAAAAATAACGCA
CGGGGATATGGGTTGTACGCGTCGCTGGGGTACCAGGTGCTGTGGGAGTG
GCCTGGGGAAGGGGTGTGGTTGATGAGGAAGTGGGTAATGGATGAGGGGG
AAGAAGCACGGGAGGAGGCGGAGAAGAAAGAGAGGGAGGACTGTCAGATG
ATGGTGGGGACAGTGATGATGCCATGTATGAATTGGGTGGAAGGGGAGGT
GAAAGACGTGGTGGAGGGAAGGAAAGAGGAGGGGGTGAAGGATGAGGGGG
AGTAG
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Coding sequence (CDS) from alignment at chr4:308242..309246+

>NO04G00960.1 ID=NO04G00960.1|Name=NO04G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr4:308242..309246+ (Nannochloropsis oceanica)
ATGACGAAAAGGACACGGCCGCCACTACCTCCACCCCCTTTCCTGTCCTT
CTCCCTCCCCCTCTTCCTCCTCCTACAAATCATTTTAGACGCCGCCACCG
CCTTCCTCCTCCCTCTCCCCACCCACCCTCCCCGCCTACGACAGCCCTTC
CCGCCACCTTACGCCACCACTACCTCCTCGCCAAATAACAACAACGACGA
CGTCTCTCCCTGCCTCCCCACATCATCCTCCTTCACCTATTCCTCCTCCA
TTCCCACCCGCACCCGTCTCTGTGTCCGTCCCGCCAACAAGGCGGACCTA
CGGCGCGTGGCCACCATGCAAGTTGCCGAGTACGGCGGAGACGGTATTCT
TTTCTTCTGGCACTATTTACAAGAACTCGATCGGCTTCAAACTTCTTATT
GGGTCGAGCCCGTGCGACACACAATGCTTGTCCTTGTCGACGACTCCTCT
TCCTCCCCCTCCTCCCTCTCTCCCTCCTCCTCATCATTCCCCTTTTCCCC
CCTCTCTGTGGCCCTCCGTGCGCTCGACAACTTTTTCCTAGGCGACCCGC
GCATTGTGGGCTTCGTGGACTTGGATGCACGGGAGCGCCGCGTGGACAAA
ACCACCCCCGACCCCTACCTCTCCGATTTAATCGTTGACGCCTCTCGACG
CGGCCAAGGACTAGGGAAGGCCTTGATGCTCGAGGCAGAGGCGGAGGCGG
AGAGGTGGGGCTTTCCAGCAGTGTATTTAAAGGTCCGAAAAAATAACGCA
CGGGGATATGGGTTGTACGCGTCGCTGGGGTACCAGGTGCTGTGGGAGTG
GCCTGGGGAAGGGGTGTGGTTGATGAGGAAGTGGGTAATGGATGAGGGGG
AAGAAGCACGGGAGGAGGCGGAGAAGAAAGAGAGGGAGGACTGTCAGATG
ATGGTGGGGACAGTGATGATGCCATGTATGAATTGGGTGGAAGGGGAGGT
GAAAGACGTGGTGGAGGGAAGGAAAGAGGAGGGGGTGAAGGATGAGGGGG
AGTAG
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Synonyms
Publications