NO04G00920.1, NO04G00920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00920.1
Unique NameNO04G00920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length798
Alignment locationchr4:300510..301621 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:300510..301621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00920.1 vs.
Match: EWM28473.1 (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 362.5 bits (929), Expect = 1.200e-96
Identity = 184/267 (68.91%), Postives = 221/267 (82.77%), Query Frame = 0 
Query:    5 DIETQQQQH---------EPSWMREEAAGEAVGASAQPHPSFAA-SNAYSQQHESTPLR-SAPSSVASSVGRPYKRAVMHRPYLHPRDIRRGFCLNVFIAINAVTVLSALSVAVAEILSIIYHDLSPQAVAIRVYGVIFAFGVIFTEMGWTQAIRDTWLLQNWVSRGAIYTFVGLLALEQEAERRAAVNLANLFIFFAGLGLVGLGILYFFMGILCLKGVRDRKAADYTICRSQAELEEALRRHGDTGKEDVETIPSSYQAGGGGGY 261
            D +T   QH         EPSWM E+AAGEA GA+AQP+PS AA S+ +  QHE+TPLR SAPSSVASS GRP K   M+RPYL  +DIRRG CL++F+AINAV VLSALSVAVAEILSI+YH LSP  +AIRVYG++F+ GV+FTE+GWTQA+RDTWLLQNW+SRGAIYTFVGLL+++QE E  A +N+ N+FI+ AGLGL+GLG+LYF MG+ CLKGVRDR+AADYTI +SQAELEEALRRHGD GK+D+E  PS+YQAGGGGG+
Sbjct:   16 DTDTNHYQHQQYHRGTNPEPSWMHEQAAGEAAGAAAQPYPSAAATSHTHQNQHETTPLRGSAPSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVGKDDLEDAPSTYQAGGGGGF 282
The following BLAST results are available for this feature:
BLAST of NO04G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28473.11.200e-9668.91Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00920NO04G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00920.1NO04G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00920.1.cds1NO04G00920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00920.1.cds2NO04G00920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00920.1.cds3NO04G00920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00920.1 ID=NO04G00920.1|Name=NO04G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
ATGCGCACGACTGACATAGAGACGCAACAACAGCAACACGAGCCGTCGTG
GATGCGGGAAGAGGCTGCTGGAGAAGCTGTCGGCGCCTCTGCTCAACCTC
ACCCGTCCTTTGCCGCCTCGAACGCCTACTCGCAGCAGCACGAGTCCACG
CCCTTGCGCAGTGCCCCTTCCTCCGTTGCGTCCTCGGTTGGGCGGCCTTA
CAAACGAGCTGTCATGCATCGTCCCTATCTTCACCCAAGAGACATCCGCC
GCGGCTTTTGCTTGAACGTTTTCATCGCCATAAACGCTGTAACTGTGCTA
AGCGCGCTCTCCGTAGCAGTAGCAGAAATTCTATCCATTATTTATCACGA
CCTTTCGCCGCAGGCAGTAGCCATTCGCGTTTATGGTGTCATTTTTGCAT
TTGGCGTAATTTTCACGGAGATGGGATGGACGCAGGCGATTCGAGACACG
TGGCTATTGCAGAACTGGGTTAGCCGTGGGGCAATCTACACCTTTGTCGG
CCTCCTGGCTCTAGAGCAGGAAGCCGAACGCAGGGCTGCCGTCAACTTGG
CCAATCTTTTTATTTTTTTCGCTGGTCTAGGCCTCGTGGGCCTCGGAATT
CTCTACTTTTTCATGGGCATCTTGTGTTTGAAAGGAGTGCGAGATCGAAA
GGCGGCAGACTATACCATTTGCCGCTCCCAGGCGGAGCTGGAGGAGGCGT
TAAGGAGGCATGGGGATACCGGGAAGGAGGATGTGGAGACGATTCCCTCG
TCTTACCAAGCGGGCGGTGGGGGAGGCTACACAAATGTGGTCATTTAG
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protein sequence of NO04G00920.1

>NO04G00920.1-protein ID=NO04G00920.1-protein|Name=NO04G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MRTTDIETQQQQHEPSWMREEAAGEAVGASAQPHPSFAASNAYSQQHEST
PLRSAPSSVASSVGRPYKRAVMHRPYLHPRDIRRGFCLNVFIAINAVTVL
SALSVAVAEILSIIYHDLSPQAVAIRVYGVIFAFGVIFTEMGWTQAIRDT
WLLQNWVSRGAIYTFVGLLALEQEAERRAAVNLANLFIFFAGLGLVGLGI
LYFFMGILCLKGVRDRKAADYTICRSQAELEEALRRHGDTGKEDVETIPS
SYQAGGGGGYTNVVI*
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mRNA from alignment at chr4:300510..301621+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00920.1 ID=NO04G00920.1|Name=NO04G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp|location=Sequence derived from alignment at chr4:300510..301621+ (Nannochloropsis oceanica)
ATGCGCACGACTGACATAGAGACGCAACAACAGCAACACGAGCCGTCGTG
GATGCGGGAAGAGGCTGCTGGAGAAGCTGTCGGCGCCTCTGCTCAACCTC
ACCCGTCCTTTGCCGCCTCGAACGCCTACTCGCAGCAGCACGAGTCCACG
CCCTTGCGCAGTGCCCCTTCCTCCGTTGCGTCCTCGGTTGGGCGGCCTTA
CAAACGAGCTGTCATGCATCGTCCCTATCTTCACCCAAGAGACATCCGCC
GCGGCTTTTGCTTGAACGTTTTCATCGCCATAAACGCTGTAACTGTGCTA
AGCGCGCTCTCCGTAGCAGTAGCAGAAATTCTATCCATTATTTATCACGA
CCTTTCGCCGCAGGCAGTAGCCATTCGCGTTTATGGTGTCATTTTTGCAT
TTGGCGTAATTTTCACGGAGATGGGATGGACGCAGGTTTGTGAATGGAAA
TGGAGGGAGGGAGGGATATTCCAAGTAGAGCAAGGACGTGAAAGGAAAGT
CATGGGAGAGAAAAACTGTACTTCATCGTAGATATCTTGCATTTAGCTTG
TCACTCATCGCATCTTTGCCTCCCTTGTCCTCCATGCACAGGCGATTCGA
GACACGTGGCTATTGCAGAACTGGGTTAGCCGTGGGGTAAGTTAATTTGT
ATATCTGACTGAGAGGAAACAGGATACACGTCGCGTAGAGATAGAGAGGC
CACTGTATATGTGCGATCGGAAAATATCATCCGCCATACTGCTTCACCGC
GTTCTTACATCGTTTTCTCCCTCCCTCCCCTGCCTCCCTGTCAGGCAATC
TACACCTTTGTCGGCCTCCTGGCTCTAGAGCAGGAAGCCGAACGCAGGGC
TGCCGTCAACTTGGCCAATCTTTTTATTTTTTTCGCTGGTCTAGGCCTCG
TGGGCCTCGGAATTCTCTACTTTTTCATGGGCATCTTGTGTTTGAAAGGA
GTGCGAGATCGAAAGGCGGCAGACTATACCATTTGCCGCTCCCAGGCGGA
GCTGGAGGAGGCGTTAAGGAGGCATGGGGATACCGGGAAGGAGGATGTGG
AGACGATTCCCTCGTCTTACCAAGCGGGCGGTGGGGGAGGCTACACAAAT
GTGGTCATTTAG
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Coding sequence (CDS) from alignment at chr4:300510..301621+

>NO04G00920.1 ID=NO04G00920.1|Name=NO04G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr4:300510..301621+ (Nannochloropsis oceanica)
ATGCGCACGACTGACATAGAGACGCAACAACAGCAACACGAGCCGTCGTG
GATGCGGGAAGAGGCTGCTGGAGAAGCTGTCGGCGCCTCTGCTCAACCTC
ACCCGTCCTTTGCCGCCTCGAACGCCTACTCGCAGCAGCACGAGTCCACG
CCCTTGCGCAGTGCCCCTTCCTCCGTTGCGTCCTCGGTTGGGCGGCCTTA
CAAACGAGCTGTCATGCATCGTCCCTATCTTCACCCAAGAGACATCCGCC
GCGGCTTTTGCTTGAACGTTTTCATCGCCATAAACGCTGTAACTGTGCTA
AGCGCGCTCTCCGTAGCAGTAGCAGAAATTCTATCCATTATTTATCACGA
CCTTTCGCCGCAGGCAGTAGCCATTCGCGTTTATGGTGTCATTTTTGCAT
TTGGCGTAATTTTCACGGAGATGGGATGGACGCAGGCGATTCGAGACACG
TGGCTATTGCAGAACTGGGTTAGCCGTGGGGCAATCTACACCTTTGTCGG
CCTCCTGGCTCTAGAGCAGGAAGCCGAACGCAGGGCTGCCGTCAACTTGG
CCAATCTTTTTATTTTTTTCGCTGGTCTAGGCCTCGTGGGCCTCGGAATT
CTCTACTTTTTCATGGGCATCTTGTGTTTGAAAGGAGTGCGAGATCGAAA
GGCGGCAGACTATACCATTTGCCGCTCCCAGGCGGAGCTGGAGGAGGCGT
TAAGGAGGCATGGGGATACCGGGAAGGAGGATGTGGAGACGATTCCCTCG
TCTTACCAAGCGGGCGGTGGGGGAGGCTACACAAATGTGGTCATTTAG
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Synonyms
Publications