NO04G00910.1, NO04G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00910.1
Unique NameNO04G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1995
Alignment locationchr4:297931..300050 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:297931..300050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00910.1 vs.
Match: EWM28467.1 (cryptochrome chloroplastic mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 871.3 bits (2250), Expect = 1.900e-249
Identity = 428/619 (69.14%), Postives = 496/619 (80.13%), Query Frame = 0 
Query:    1 MFGLPFRSAALATVVCFILHSATASAAARPSTRLSPAFGRALFSLSRVSSVPAQRRQQRGHSLSKHYTHSPISSATMSAAASST----AASAPSATKCGLVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQGNLVVKIGKPEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKVTDGKSKLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKF--GGGGGVKGGGGREEADKAG 614
            MF L  RSAAL T+VC IL  A A      ++ ++ AF R   +    +S   Q           H+ H  +  A +++  + T     +S  S  KCGLVWYKC+DLRTLDHEPLSLAHAEN++V HLFCFDPRWFG+AGGPSAPGTLKTG LRARFLLEAV+DLK RL GN++VK+GKPE EVPRLAKAL    VYAHREVTSEE+ VVKGV+EGL K T+GKS+ RE WG YLYHI+D+PF ++KQ+MP +FTQFRKAVESK+R+RKY P P +LKP P      +  E   NA+ SP+TL+ALGFT EEDL PV+ Y  D RV+P++VLMFKGGETAGLARL+EY W+KDLL+ YKETRNGMLGPDYSSKFSPWLATGSISPRV+FAEI KYERERVENDSTYWL FELI RDFFR+S ISFGN FFKLGGPQ NP+KYPWKRDGAL++AWKEG TGYPLVDANMRELK TGFMSNRGRQ+VASF+TRDMGL+WRLGAYWFEE LLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQG TYDP+A Y+KHWCPEL+ +PAD+L+NP R D  VRA++ V E+VYPR +VPLKF  GGGGG+KG GG+  + + G
Sbjct:    1 MFPLLPRSAALTTLVCHILVRARAGFPHSSASTVT-AFVRPFLTPILATSGTGQ-----------HWLHRAVPRAAVASTVTMTNGEGTSSDTSVKKCGLVWYKCTDLRTLDHEPLSLAHAENSHVAHLFCFDPRWFGDAGGPSAPGTLKTGPLRARFLLEAVEDLKTRLGGNMIVKLGKPETEVPRLAKALKVDFVYAHREVTSEEVAVVKGVKEGLSKATEGKSQFRELWGNYLYHIDDVPFQNLKQDMPSIFTQFRKAVESKARVRKYLPKPPSLKPAPPR----STVEENTNALLSPLTLEALGFTREEDLGPVLSYASDTRVDPSSVLMFKGGETAGLARLQEYFWDKDLLQKYKETRNGMLGPDYSSKFSPWLATGSISPRVIFAEIRKYERERVENDSTYWLFFELIWRDFFRFSAISFGNAFFKLGGPQGNPRKYPWKRDGALYHAWKEGLTGYPLVDANMRELKTTGFMSNRGRQLVASFLTRDMGLEWRLGAYWFEEVLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGATYDPEARYIKHWCPELRHIPADILLNPARFDGPVRAKFAVGEEVYPRQIVPLKFGGGGGGGIKGSGGKSGSKRGG 603
The following BLAST results are available for this feature:
BLAST of NO04G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28467.11.900e-24969.14cryptochrome chloroplastic mitochondrial-like prot... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00910NO04G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00910.1NO04G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00910.1.cds1NO04G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00910.1.cds2NO04G00910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00910.1 ID=NO04G00910.1|Name=NO04G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1995bp
AACAACTGCAGACCCGCTTTGTGTATGTTTGGGCTGCCCTTTCGCTCGGC
AGCTCTCGCAACCGTGGTTTGCTTTATCCTCCACAGCGCCACCGCATCAG
CAGCCGCTCGGCCAAGTACAAGGCTCTCTCCTGCCTTCGGGCGTGCGCTG
TTCTCATTATCCAGAGTCTCATCTGTCCCAGCCCAGCGACGTCAGCAACG
AGGGCATTCCCTAAGCAAGCACTACACGCACAGCCCCATCAGCAGCGCCA
CAATGTCTGCTGCTGCCTCCTCCACCGCAGCATCAGCCCCAAGCGCGACA
AAGTGCGGCCTCGTTTGGTACAAATGTTCGGACCTTCGTACACTCGATCA
CGAGCCTCTGTCCTTGGCCCACGCTGAAAACAACAATGTCTGTCATCTTT
TCTGCTTCGACCCCCGCTGGTTCGGGGAGGCCGGTGGGCCGTCCGCACCC
GGCACGCTCAAGACAGGCGCTTTGCGCGCACGCTTTCTGCTCGAAGCTGT
ACAGGATTTGAAAATCCGATTGCAAGGCAATCTTGTCGTTAAAATAGGTA
AGCCCGAGATGGAAGTCCCCCGGTTGGCCAAGGCTTTGGGGGCGACGACA
GTGTACGCCCACCGCGAGGTAACGTCCGAGGAGCTCACCGTGGTAAAAGG
AGTGCAGGAGGGCCTGCGAAAGGTGACAGACGGGAAAAGCAAGCTTCGGG
AAGCCTGGGGTGGTTACCTCTATCATATCAATGATTTGCCGTTCGATGAC
GTGAAGCAAAACATGCCGGATGTCTTTACTCAGTTCCGCAAGGCTGTCGA
ATCCAAGTCCCGCATCCGCAAATATTTCCCCGTCCCGTCTGCGCTCAAGC
CTCCGCCCTCCGCCTTATCAGGTGCTGCAGCCGAAGAGTCGGCCGTGAAT
GCCATGCCTTCTCCCGTGACATTGCAGGCGTTGGGCTTCACGACCGAGGA
GGACTTAGAGCCGGTGGTGGGGTACGGGAGGGATGCGAGGGTGAACCCCG
CGGCTGTCTTGATGTTCAAGGGGGGGGAGACGGCGGGCTTGGCCAGATTG
AGGGAATACTTGTGGGAGAAGGACCTGCTCAAAAGTTACAAGGAGACCCG
CAACGGCATGCTTGGTCCCGACTACAGCAGCAAATTCAGCCCCTGGCTTG
CCACTGGCAGCATCTCTCCTCGTGTGGTCTTTGCCGAGATCACCAAATAT
GAGAGAGAGAGGGTGGAGAACGACAGCACCTACTGGTTAGTGTTCGAGCT
GATCCGGCGTGACTTCTTTCGGTATTCAGGCATCTCGTTCGGTAATGATT
TCTTTAAATTGGGCGGGCCGCAGAAGAACCCGAAGAAGTACCCATGGAAG
AGGGATGGGGCATTGTTCTACGCCTGGAAAGAGGGTAGGACGGGGTATCC
CCTGGTGGACGCTAACATGAGAGAGTTGAAAGCAACAGGGTTCATGTCTA
ACCGCGGACGGCAGATAGTGGCATCTTTTATGACGAGGGACATGGGCTTG
GATTGGCGTTTGGGCGCGTATTGGTTTGAGGAGTGTTTGTTGGATTATGA
CCCGTGTTCGAATTATGGGAATTGGTGCTATGCCGCGGGCGTGGGGAGCG
ACCCCAGGGAGGACCGGTACTTTTCCCTGCCGAAACAGGGCGGGACTTAT
GATCCTGACGCGGTGTATATGAAGCATTGGTGCCCTGAATTGAAGGATCT
GCCGGCGGATGTGCTGATTAACCCTGGGAGACTTGATGCGGTTGTACGGG
CGAGGTATGGCGTGGATGAGGACGTTTACCCGAGACCTGTCGTGCCGCTG
AAGTTTGGGGGAGGAGGAGGCGTGAAGGGAGGGGGGGGAAGGGAGGAAGC
GGACAAGGCAGGGGAGGAGGAGGCGGAGGAGGAGGTAAAGGACGGGCGCC
GTTCAAGGGACCCCGGCGACCGGCCAATCGGTTGCAGAACGATTACTTTT
AATTTTACGAGGCTGATCCGGGCTGAGGGAGGGAAGTGGAAGTAG
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protein sequence of NO04G00910.1

>NO04G00910.1-protein ID=NO04G00910.1-protein|Name=NO04G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp
MFGLPFRSAALATVVCFILHSATASAAARPSTRLSPAFGRALFSLSRVSS
VPAQRRQQRGHSLSKHYTHSPISSATMSAAASSTAASAPSATKCGLVWYK
CSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGAL
RARFLLEAVQDLKIRLQGNLVVKIGKPEMEVPRLAKALGATTVYAHREVT
SEELTVVKGVQEGLRKVTDGKSKLREAWGGYLYHINDLPFDDVKQNMPDV
FTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTL
QALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKD
LLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVEND
STYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYA
WKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYW
FEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMK
HWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKFGGGGGV
KGGGGREEADKAGEEEAEEEVKDGRRSRDPGDRPIGCRTITFNFTRLIRA
EGGKWK*
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mRNA from alignment at chr4:297931..300050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00910.1 ID=NO04G00910.1|Name=NO04G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp|location=Sequence derived from alignment at chr4:297931..300050+ (Nannochloropsis oceanica)
AACAACTGCAGACCCGCTTTGTGTATGTTTGGGCTGCCCTTTCGCTCGGC
AGCTCTCGCAACCGTGGTTTGCTTTATCCTCCACAGCGCCACCGCATCAG
CAGCCGCTCGGCCAAGTACAAGGCTCTCTCCTGCCTTCGGGCGTGCGCTG
TTCTCATTATCCAGAGTCTCATCTGTCCCAGCCCAGCGACGTCAGCAACG
AGGGCATTCCCTAAGCAAGCACTACACGCACAGCCCCATCAGCAGCGCCA
CAATGTCTGCTGCTGCCTCCTCCACCGCAGCATCAGCCCCAAGCGCGACA
AAGTGCGGCCTCGTTTGGTACAAATGTTCGGACCTTCGTACACTCGATCA
CGAGCCTCTGTCCTTGGCCCACGCTGAAAACAACAATGTCTGTCATCTTT
TCTGCTTCGACCCCCGCTGGTTCGGGGAGGCCGGTGGGCCGTCCGCACCC
GGCACGCTCAAGACAGGCGCTTTGCGCGCACGCTTTCTGCTCGAAGCTGT
ACAGGATTTGAAAATCCGATTGCAAGGCAATCTTGTCGTTAAAATAGGTA
AGCCCGAGATGGAAGTCCCCCGGTTGGCCAAGGCTTTGGGGGCGACGACA
GTGTACGCCCACCGCGAGGTAACGTCCGAGGAGCTCACCGTGGTAAAAGG
AGTGCAGGAGGGCCTGCGAAAGGTGACAGACGGGAAAAGCAAGCTTCGGG
AAGCCTGGGGTGGTTACCTCTATCATATCAATGATTTGCCGTTCGATGAC
GTGAAGCAAAACATGCCGGATGTCTTTACTCAGTTCCGCAAGGCTGTCGA
ATCCAAGTCCCGCATCCGCAAATATTTCCCCGTCCCGTCTGCGCTCAAGC
CTCCGCCCTCCGCCTTATCAGGTGCTGCAGCCGAAGAGTCGGCCGTGAAT
GCCATGCCTTCTCCCGTGACATTGCAGGCGTTGGGCTTCACGACCGAGGA
GGACTTAGAGCCGGTGGTGGGGTACGGGAGGGATGCGAGGGTGAACCCCG
CGGCTGTCTTGATGTTCAAGGGGGGGGAGACGGCGGGCTTGGCCAGATTG
AGGGAATACTTGTGGGAGAAGGACCTGGTAAGTATAAGATGATGAAGACG
AAGGATTTGTCGTATGTCCTAGTTTGAGTATTCGACGGGGAGAGATTTTC
CTTCACGAATTGTCTTCCCTTCCCTCCTTCCCTCCCCTTCCTCGTTCTCT
AGCTCAAAAGTTACAAGGAGACCCGCAACGGCATGCTTGGTCCCGACTAC
AGCAGCAAATTCAGCCCCTGGCTTGCCACTGGCAGCATCTCTCCTCGTGT
GGTCTTTGCCGAGATCACCAAATATGAGAGAGAGAGGGTGGAGAACGACA
GCACCTACTGGTTAGTGTTCGAGCTGATCCGGCGTGACTTCTTTCGGTAT
TCAGGCATCTCGTTCGGTAATGATTTCTTTAAATTGGGCGGGCCGCAGAA
GAACCCGAAGAAGTACCCATGGAAGAGGGATGGGGCATTGTTCTACGCCT
GGAAAGAGGGTAGGACGGGGTATCCCCTGGTGGACGCTAACATGAGAGAG
TTGAAAGCAACAGGGTTCATGTCTAACCGCGGACGGCAGATAGTGGCATC
TTTTATGACGAGGGACATGGGCTTGGATTGGCGTTTGGGCGCGTATTGGT
TTGAGGAGTGTTTGTTGGATTATGACCCGTGTTCGAATTATGGGAATTGG
TGCTATGCCGCGGGCGTGGGGAGCGACCCCAGGGAGGACCGGTACTTTTC
CCTGCCGAAACAGGGCGGGACTTATGATCCTGACGCGGTGTATATGAAGC
ATTGGTGCCCTGAATTGAAGGATCTGCCGGCGGATGTGCTGATTAACCCT
GGGAGACTTGATGCGGTTGTACGGGCGAGGTATGGCGTGGATGAGGACGT
TTACCCGAGACCTGTCGTGCCGCTGAAGTTTGGGGGAGGAGGAGGCGTGA
AGGGAGGGGGGGGAAGGGAGGAAGCGGACAAGGCAGGGGAGGAGGAGGCG
GAGGAGGAGGTAAAGGACGGGCGCCGTTCAAGGGACCCCGGCGACCGGCC
AATCGGTTGCAGAACGATTACTTTTAATTTTACGAGGCTGATCCGGGCTG
AGGGAGGGAAGTGGAAGTAG
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Coding sequence (CDS) from alignment at chr4:297931..300050+

>NO04G00910.1 ID=NO04G00910.1|Name=NO04G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=1971bp|location=Sequence derived from alignment at chr4:297931..300050+ (Nannochloropsis oceanica)
ATGTTTGGGCTGCCCTTTCGCTCGGCAGCTCTCGCAACCGTGGTTTGCTT
TATCCTCCACAGCGCCACCGCATCAGCAGCCGCTCGGCCAAGTACAAGGC
TCTCTCCTGCCTTCGGGCGTGCGCTGTTCTCATTATCCAGAGTCTCATCT
GTCCCAGCCCAGCGACGTCAGCAACGAGGGCATTCCCTAAGCAAGCACTA
CACGCACAGCCCCATCAGCAGCGCCACAATGTCTGCTGCTGCCTCCTCCA
CCGCAGCATCAGCCCCAAGCGCGACAAAGTGCGGCCTCGTTTGGTACAAA
TGTTCGGACCTTCGTACACTCGATCACGAGCCTCTGTCCTTGGCCCACGC
TGAAAACAACAATGTCTGTCATCTTTTCTGCTTCGACCCCCGCTGGTTCG
GGGAGGCCGGTGGGCCGTCCGCACCCGGCACGCTCAAGACAGGCGCTTTG
CGCGCACGCTTTCTGCTCGAAGCTGTACAGGATTTGAAAATCCGATTGCA
AGGCAATCTTGTCGTTAAAATAGGTAAGCCCGAGATGGAAGTCCCCCGGT
TGGCCAAGGCTTTGGGGGCGACGACAGTGTACGCCCACCGCGAGGTAACG
TCCGAGGAGCTCACCGTGGTAAAAGGAGTGCAGGAGGGCCTGCGAAAGGT
GACAGACGGGAAAAGCAAGCTTCGGGAAGCCTGGGGTGGTTACCTCTATC
ATATCAATGATTTGCCGTTCGATGACGTGAAGCAAAACATGCCGGATGTC
TTTACTCAGTTCCGCAAGGCTGTCGAATCCAAGTCCCGCATCCGCAAATA
TTTCCCCGTCCCGTCTGCGCTCAAGCCTCCGCCCTCCGCCTTATCAGGTG
CTGCAGCCGAAGAGTCGGCCGTGAATGCCATGCCTTCTCCCGTGACATTG
CAGGCGTTGGGCTTCACGACCGAGGAGGACTTAGAGCCGGTGGTGGGGTA
CGGGAGGGATGCGAGGGTGAACCCCGCGGCTGTCTTGATGTTCAAGGGGG
GGGAGACGGCGGGCTTGGCCAGATTGAGGGAATACTTGTGGGAGAAGGAC
CTGCTCAAAAGTTACAAGGAGACCCGCAACGGCATGCTTGGTCCCGACTA
CAGCAGCAAATTCAGCCCCTGGCTTGCCACTGGCAGCATCTCTCCTCGTG
TGGTCTTTGCCGAGATCACCAAATATGAGAGAGAGAGGGTGGAGAACGAC
AGCACCTACTGGTTAGTGTTCGAGCTGATCCGGCGTGACTTCTTTCGGTA
TTCAGGCATCTCGTTCGGTAATGATTTCTTTAAATTGGGCGGGCCGCAGA
AGAACCCGAAGAAGTACCCATGGAAGAGGGATGGGGCATTGTTCTACGCC
TGGAAAGAGGGTAGGACGGGGTATCCCCTGGTGGACGCTAACATGAGAGA
GTTGAAAGCAACAGGGTTCATGTCTAACCGCGGACGGCAGATAGTGGCAT
CTTTTATGACGAGGGACATGGGCTTGGATTGGCGTTTGGGCGCGTATTGG
TTTGAGGAGTGTTTGTTGGATTATGACCCGTGTTCGAATTATGGGAATTG
GTGCTATGCCGCGGGCGTGGGGAGCGACCCCAGGGAGGACCGGTACTTTT
CCCTGCCGAAACAGGGCGGGACTTATGATCCTGACGCGGTGTATATGAAG
CATTGGTGCCCTGAATTGAAGGATCTGCCGGCGGATGTGCTGATTAACCC
TGGGAGACTTGATGCGGTTGTACGGGCGAGGTATGGCGTGGATGAGGACG
TTTACCCGAGACCTGTCGTGCCGCTGAAGTTTGGGGGAGGAGGAGGCGTG
AAGGGAGGGGGGGGAAGGGAGGAAGCGGACAAGGCAGGGGAGGAGGAGGC
GGAGGAGGAGGTAAAGGACGGGCGCCGTTCAAGGGACCCCGGCGACCGGC
CAATCGGTTGCAGAACGATTACTTTTAATTTTACGAGGCTGATCCGGGCT
GAGGGAGGGAAGTGGAAGTAG
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Synonyms
Publications