NO04G00890.1, NO04G00890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00890.1
Unique NameNO04G00890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length723
Alignment locationchr4:292058..292780 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:292058..292780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00890.1 vs.
Match: EWM28470.1 (transmembrane emp24 domain-containing protein 10 [Nannochloropsis gaditana])

HSP 1 Score: 288.1 bits (736), Expect = 2.500e-74
Identity = 155/239 (64.85%), Postives = 191/239 (79.92%), Query Frame = 0 
Query:    5 NQQEPTSVPPHGACSSTTPPT---TIITPERRRAPLSFPFLLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRVQENVRATVSNPDGQSVWDSYITAQTQNVPVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            ++Q+P+S P H  C  ++P     T ++  RR  P S P LL+ S  L L   ++AIQLD++P++TRC++D+YAP+EDSTIK+RAVGRVQ+ +R  VS PD +  WD Y+TA+ ++V + AD FGLY+ICF NGG  VQRVEVGLLD+AV L    ++AKTKEHL+PLQLLFRRAELTVAGVSKELDSVRQREA LRETS+STN RIQWFSIFSIVILLAVS+WQVTFLKSFFR+KKLL
Sbjct:    4 SEQQPSSTP-HTNCFPSSPKQHAHTTLSGRRRMLPFSAP-LLLFSCQLALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQL-HNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239
The following BLAST results are available for this feature:
BLAST of NO04G00890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28470.12.500e-7464.85transmembrane emp24 domain-containing protein 10 [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00890NO04G00890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00890.1NO04G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00890.1.cds1NO04G00890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00890.1 ID=NO04G00890.1|Name=NO04G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
ATGGCGCCATCTAACCAACAAGAACCCACGTCCGTGCCGCCACATGGTGC
CTGCTCCTCAACCACGCCTCCCACCACCATCATCACCCCAGAAAGAAGAC
GCGCCCCACTTTCATTTCCCTTCCTCCTCGTCGTCTCTCTGGCCCTCCTG
CTCCCTGGGCCTCTTCACGCTATTCAGTTGGATGTGGAGCCCTACAGCAC
TCGCTGCATCTCTGACGACTACGCACCCGACGAGGACTCAACCATCAAGT
TGCGGGCAGTTGGTCGCGTCCAAGAAAACGTCCGGGCCACGGTCTCCAAT
CCTGACGGCCAGTCCGTGTGGGATAGCTACATCACCGCTCAAACGCAAAA
TGTGCCCGTGTCCGCAGATAATTTCGGTTTGTATCGCATTTGCTTCTCGA
ACGGCGGGTCAGCGGTGCAGCGGGTGGAGGTGGGGTTGTTGGACCGAGCG
GTGACGTTGGGCCAGAAATTCGATTCCGCCAAGACCAAAGAGCACCTGCG
GCCTTTGCAGCTCTTATTTCGCCGCGCGGAGTTGACTGTGGCGGGGGTTA
GCAAGGAATTGGACAGCGTCCGGCAAAGAGAGGCGGTGTTGCGGGAAACC
AGCGATTCGACGAATACCCGCATTCAGTGGTTTTCCATTTTTTCGATAGT
TATTCTATTGGCCGTGAGCTTATGGCAGGTGACTTTCCTCAAGTCCTTCT
TTCGCTCTAAGAAGCTTTTGTAG
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protein sequence of NO04G00890.1

>NO04G00890.1-protein ID=NO04G00890.1-protein|Name=NO04G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MAPSNQQEPTSVPPHGACSSTTPPTTIITPERRRAPLSFPFLLVVSLALL
LPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRVQENVRATVSN
PDGQSVWDSYITAQTQNVPVSADNFGLYRICFSNGGSAVQRVEVGLLDRA
VTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRET
SDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL*
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mRNA from alignment at chr4:292058..292780+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00890.1 ID=NO04G00890.1|Name=NO04G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=723bp|location=Sequence derived from alignment at chr4:292058..292780+ (Nannochloropsis oceanica)
ATGGCGCCATCTAACCAACAAGAACCCACGTCCGTGCCGCCACATGGTGC
CTGCTCCTCAACCACGCCTCCCACCACCATCATCACCCCAGAAAGAAGAC
GCGCCCCACTTTCATTTCCCTTCCTCCTCGTCGTCTCTCTGGCCCTCCTG
CTCCCTGGGCCTCTTCACGCTATTCAGTTGGATGTGGAGCCCTACAGCAC
TCGCTGCATCTCTGACGACTACGCACCCGACGAGGACTCAACCATCAAGT
TGCGGGCAGTTGGTCGCGTCCAAGAAAACGTCCGGGCCACGGTCTCCAAT
CCTGACGGCCAGTCCGTGTGGGATAGCTACATCACCGCTCAAACGCAAAA
TGTGCCCGTGTCCGCAGATAATTTCGGTTTGTATCGCATTTGCTTCTCGA
ACGGCGGGTCAGCGGTGCAGCGGGTGGAGGTGGGGTTGTTGGACCGAGCG
GTGACGTTGGGCCAGAAATTCGATTCCGCCAAGACCAAAGAGCACCTGCG
GCCTTTGCAGCTCTTATTTCGCCGCGCGGAGTTGACTGTGGCGGGGGTTA
GCAAGGAATTGGACAGCGTCCGGCAAAGAGAGGCGGTGTTGCGGGAAACC
AGCGATTCGACGAATACCCGCATTCAGTGGTTTTCCATTTTTTCGATAGT
TATTCTATTGGCCGTGAGCTTATGGCAGGTGACTTTCCTCAAGTCCTTCT
TTCGCTCTAAGAAGCTTTTGTAG
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Coding sequence (CDS) from alignment at chr4:292058..292780+

>NO04G00890.1 ID=NO04G00890.1|Name=NO04G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr4:292058..292780+ (Nannochloropsis oceanica)
ATGGCGCCATCTAACCAACAAGAACCCACGTCCGTGCCGCCACATGGTGC
CTGCTCCTCAACCACGCCTCCCACCACCATCATCACCCCAGAAAGAAGAC
GCGCCCCACTTTCATTTCCCTTCCTCCTCGTCGTCTCTCTGGCCCTCCTG
CTCCCTGGGCCTCTTCACGCTATTCAGTTGGATGTGGAGCCCTACAGCAC
TCGCTGCATCTCTGACGACTACGCACCCGACGAGGACTCAACCATCAAGT
TGCGGGCAGTTGGTCGCGTCCAAGAAAACGTCCGGGCCACGGTCTCCAAT
CCTGACGGCCAGTCCGTGTGGGATAGCTACATCACCGCTCAAACGCAAAA
TGTGCCCGTGTCCGCAGATAATTTCGGTTTGTATCGCATTTGCTTCTCGA
ACGGCGGGTCAGCGGTGCAGCGGGTGGAGGTGGGGTTGTTGGACCGAGCG
GTGACGTTGGGCCAGAAATTCGATTCCGCCAAGACCAAAGAGCACCTGCG
GCCTTTGCAGCTCTTATTTCGCCGCGCGGAGTTGACTGTGGCGGGGGTTA
GCAAGGAATTGGACAGCGTCCGGCAAAGAGAGGCGGTGTTGCGGGAAACC
AGCGATTCGACGAATACCCGCATTCAGTGGTTTTCCATTTTTTCGATAGT
TATTCTATTGGCCGTGAGCTTATGGCAGGTGACTTTCCTCAAGTCCTTCT
TTCGCTCTAAGAAGCTTTTGTAG
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Synonyms
Publications