NO04G00800.1, NO04G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00800.1
Unique NameNO04G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length741
Alignment locationchr4:272299..273343 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:272299..273343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00800.1 vs.
Match: XP_005854745.1 (hypothetical protein NGA_0409900 [Nannochloropsis gaditana CCMP526]; EKU21616.1 hypothetical protein NGA_0409900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 167.5 bits (423), Expect = 2.600e-38
Identity = 81/121 (66.94%), Postives = 99/121 (81.82%), Query Frame = 0 
Query:    1 MSSTVQDSPPASSASTNSSPEPSFLSKLSNTIETAPCFRVPLMWGIACGLAAGLHKFRVHRASPQAIMNACDFAVLGMGVSTSLGWWMCMRNRRQEEEEIGKMMAVQGFKPMTELEKEEQK 122
            M+     SP     S  SSP  SF+S+L+ +IE APCFRVPLMWGIACG+AAGLHKFRVHRASPQA++NACDFAVLGMG+STSLGWW+CMR +R+EEEE+  +MA QGFKPM ELE++ ++
Sbjct:    1 MAQVPATSPSPDGPSPPSSP--SFVSRLTASIEAAPCFRVPLMWGIACGIAAGLHKFRVHRASPQAVLNACDFAVLGMGISTSLGWWVCMRRQRKEEEELKLIMAAQGFKPMAELEEKAER 119
The following BLAST results are available for this feature:
BLAST of NO04G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854745.12.600e-3866.94hypothetical protein NGA_0409900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00800NO04G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00800.1NO04G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00800.1.cds1NO04G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00800.1.cds2NO04G00800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00800.1 ID=NO04G00800.1|Name=NO04G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
ATAGACACAGGGAATAAAACAACAGCAGCGCCAACAGCAGCGTCAAGACT
ACAATGTCTAGCACGGTTCAGGACTCCCCGCCCGCCTCATCCGCCTCCAC
GAACTCCTCCCCCGAACCCTCCTTTCTCTCCAAGCTCTCCAACACCATCG
AGACGGCGCCTTGCTTCCGGGTCCCGCTCATGTGGGGTATTGCATGTGGC
CTGGCCGCAGGTCTGCACAAGTTTCGCGTTCATCGGGCGTCGCCACAGGC
CATTATGAACGCCTGTGACTTTGCAGTGTTGGGCATGGGGGTCTCCACCT
CCTTGGGTTGGTGGATGTGCATGCGAAATCGGCGGCAGGAAGAGGAGGAA
ATCGGCAAGATGATGGCCGTGCAAGGATTCAAGCCCATGACTGAGTTGGA
AAAAGAAGAACAAAAGTCAAAAAAGTGATTGTGAAGGGAGTATGTGGGAA
CATGAGACGTAGACGCATTTGCTTGTAGATATTGGAGAGAAATTAATCCA
GTACGGCGTGATTGCCGCTCACAATTGGTTTGCGAGTAGGGATGGATGGA
CGGTGAGGGGGAGGGAGGGAAGGATTCAGTGATTTGTAAATGAGACGAAA
AGAGCTCTGTCGATGAGGGATGTCTTTTGGAAAATCATCAAGGGAAGAGT
AGTGGCCGCCAGGTGAGGGACTGAAATAATGTATGTCGATAAGAAATTGT
ATTTTTTTTAAATTAACGAAGACACCAAATCCAAACCGGGT
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protein sequence of NO04G00800.1

>NO04G00800.1-protein ID=NO04G00800.1-protein|Name=NO04G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSSTVQDSPPASSASTNSSPEPSFLSKLSNTIETAPCFRVPLMWGIACGL
AAGLHKFRVHRASPQAIMNACDFAVLGMGVSTSLGWWMCMRNRRQEEEEI
GKMMAVQGFKPMTELEKEEQKSKK*
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mRNA from alignment at chr4:272299..273343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00800.1 ID=NO04G00800.1|Name=NO04G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp|location=Sequence derived from alignment at chr4:272299..273343- (Nannochloropsis oceanica)
ATAGACACAGGGAATAAAACAACAGCAGCGCCAACAGCAGCGTCAAGACT
ACAATGTCTAGCACGGTTCAGGACTCCCCGCCCGCCTCATCCGCCTCCAC
GAACTCCTCCCCCGAACCCTCCTTTCTCTCCAAGCTCTCCAACACCATCG
AGACGGCGCCTTGCTTCCGGGTCCCGCTCATGTGGGGTATTGCATGTGGC
CTGGCCGCAGGTCTGCACAAGTTTCGCGTTCATCGGGCGTCGCCACGTAC
GTTTTGGTCGGGGGTGAAAGTGGAGTAGCGGTTGGGTAGGGAGGGGTCAT
CGAACAAAGTGAGGCGAGACCTCAGCTGCTCGAGGCCATGGCTCTCCTCC
AAAAAAAAACACCCCATTGTCATGTTTATTGTCCAGCAGTTGTGTTATTC
TCTTCCTTGGAAAGACCGGGACAGACGCCGGCCAAGCCGAAGGCTGTTGA
TTTAATCTACTCAACCCTCACTCCACACCCTCCCGCTTCCATCTCAAATA
CCCCTCACTCACCCGATCACCCTCAACTACCCACGTCCCCAAACTACCAG
AGGCCATTATGAACGCCTGTGACTTTGCAGTGTTGGGCATGGGGGTCTCC
ACCTCCTTGGGTTGGTGGATGTGCATGCGAAATCGGCGGCAGGAAGAGGA
GGAAATCGGCAAGATGATGGCCGTGCAAGGATTCAAGCCCATGACTGAGT
TGGAAAAAGAAGAACAAAAGTCAAAAAAGTGATTGTGAAGGGAGTATGTG
GGAACATGAGACGTAGACGCATTTGCTTGTAGATATTGGAGAGAAATTAA
TCCAGTACGGCGTGATTGCCGCTCACAATTGGTTTGCGAGTAGGGATGGA
TGGACGGTGAGGGGGAGGGAGGGAAGGATTCAGTGATTTGTAAATGAGAC
GAAAAGAGCTCTGTCGATGAGGGATGTCTTTTGGAAAATCATCAAGGGAA
GAGTAGTGGCCGCCAGGTGAGGGACTGAAATAATGTATGTCGATAAGAAA
TTGTATTTTTTTTAAATTAACGAAGACACCAAATCCAAACCGGGT
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Coding sequence (CDS) from alignment at chr4:272299..273343-

>NO04G00800.1 ID=NO04G00800.1|Name=NO04G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr4:272299..273343- (Nannochloropsis oceanica)
ATGTCTAGCACGGTTCAGGACTCCCCGCCCGCCTCATCCGCCTCCACGAA
CTCCTCCCCCGAACCCTCCTTTCTCTCCAAGCTCTCCAACACCATCGAGA
CGGCGCCTTGCTTCCGGGTCCCGCTCATGTGGGGTATTGCATGTGGCCTG
GCCGCAGGTCTGCACAAGTTTCGCGTTCATCGGGCGTCGCCACAGGCCAT
TATGAACGCCTGTGACTTTGCAGTGTTGGGCATGGGGGTCTCCACCTCCT
TGGGTTGGTGGATGTGCATGCGAAATCGGCGGCAGGAAGAGGAGGAAATC
GGCAAGATGATGGCCGTGCAAGGATTCAAGCCCATGACTGAGTTGGAAAA
AGAAGAACAAAAGTCAAAAAAGTGA
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Synonyms
Publications