NO04G00670.1, NO04G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00670.1
Unique NameNO04G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1602
Alignment locationchr4:236137..238111 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:236137..238111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00670.1 vs.
Match: EWM28483.1 (nad-dependent epimerase dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 587.8 bits (1514), Expect = 2.400e-164
Identity = 283/363 (77.96%), Postives = 323/363 (88.98%), Query Frame = 0 
Query:   19 TTSTFIPTNAQTSGVIVTVTGAAGYLGEHLVKTFLEAGYTVRGTLRDPSKQEKVEVLKALPGAAERLTLHAADLLVPGSFDAVVEGATYVIHSASPVALEVVDDPQETLIRPAVQGTENVLDSVQKSTTVKRVVLTGSFRAVFGLGDEHPKGYVYTEKDWNVKSSLENNQGYALSKLLAEKAAWAVVEHVKPTTWDMVVLNPGLIFGPLLSRHHEEAFSIQFFKQLVTGELPPVKLPWAVVDVRDVAKAHVRACQHTPAVGRYLLTSATFSLREILDCVRDKIWRPLLRISVPKAALWLGFYTGMVGKKLSKDDIIHNVGYRILFDSSKARRELMPEGFVEPRETFREMYTSLQDHKILGTFN 382
            T + F PTN  TSG+IVTVTGA GYLGEHLVKTFLEAGYTVRGT+RD    E+++ LK+LPGA ERL+L AA+LLVPGSFD  +EGATYV+HSASPVALEVV DP+ TLIRPAV+GT+NVL SV KST+V+RVVLTGSFR++FGLGDEHPKGYVYTE+DWN KSSL+NNQGYALSK LAE+AAWA VE V PT+WDMVVLNPGLIFGPLLSR+H +AFS+QFFKQLVTGELPPVKLPWAVVDVRDVA  HVRA QH PA GRYL+TS T+SLRE+LDCVRDKIWRPLLR+SVPK  LW+GFYTG VGK+L+K+DI HNVG+RILFDSSK R+EL+PEGF  PR+TFR+MY SLQ+HKI+G FN
Sbjct:    8 TGTKFTPTNPDTSGIIVTVTGAVGYLGEHLVKTFLEAGYTVRGTVRDVDDIERLQCLKSLPGATERLSLFAANLLVPGSFDKAIEGATYVLHSASPVALEVVADPEGTLIRPAVEGTKNVLTSVHKSTSVRRVVLTGSFRSIFGLGDEHPKGYVYTEEDWNDKSSLDNNQGYALSKTLAERAAWAFVERVAPTSWDMVVLNPGLIFGPLLSRYHPDAFSVQFFKQLVTGELPPVKLPWAVVDVRDVAIVHVRAFQHAPARGRYLVTSGTYSLREMLDCVRDKIWRPLLRVSVPKPLLWIGFYTGFVGKRLAKEDIKHNVGFRILFDSSKVRKELLPEGFRAPRQTFRDMYESLQEHKIIGHFN 370
The following BLAST results are available for this feature:
BLAST of NO04G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28483.12.400e-16477.96nad-dependent epimerase dehydratase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00670NO04G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00670.1NO04G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00670.1.cds1NO04G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00670.1.cds2NO04G00670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00670.1.cds3NO04G00670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00670.1 ID=NO04G00670.1|Name=NO04G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp
CAACAGTTGCCAACAGCTGTTCCAAAGTACTGTTGAGTTCCACCGGGAGC
ACTTTCCCACATCATTTTACCATCTAGCACTTTGTCCTCGGCTCCTCTTT
TCGTTCTCATAGGTAATCAGAGACATTCAACTTGATTGCTTACCATCAAC
CTCCGTCTATAGCCCCACAAGCCGCACAAAGCCATGGTCGCGCCTCCTCC
CAGTACCAGCGAAACCAGAAGTACCAGCAGCAACATCACTACTTCGACAT
TCATTCCTACAAATGCTCAGACCAGCGGTGTGATTGTCACTGTCACAGGC
GCGGCAGGTTATCTGGGAGAGCACTTGGTCAAGACTTTTCTCGAGGCAGG
TTACACGGTCCGCGGCACATTGCGTGATCCCAGCAAGCAAGAGAAGGTCG
AGGTCTTGAAGGCCCTTCCCGGTGCCGCCGAGCGCCTGACTCTCCACGCC
GCCGATCTTCTCGTCCCCGGTTCGTTCGATGCAGTGGTGGAAGGGGCGAC
GTATGTGATCCATAGCGCATCGCCTGTCGCTCTGGAGGTGGTGGATGACC
CTCAGGAGACGCTGATCCGCCCCGCCGTACAAGGCACCGAGAACGTGCTG
GATTCTGTCCAAAAGTCTACCACTGTCAAGCGCGTTGTCCTGACTGGTTC
CTTTCGCGCCGTCTTCGGTCTTGGAGATGAACACCCCAAGGGCTATGTGT
ACACCGAGAAAGACTGGAACGTCAAGTCTTCCTTGGAGAACAACCAAGGG
TACGCCCTCAGCAAGCTGCTTGCTGAGAAAGCCGCCTGGGCGGTAGTCGA
GCATGTGAAGCCCACCACGTGGGACATGGTCGTCCTAAATCCAGGATTGA
TTTTCGGGCCGTTGCTATCCAGGCACCACGAGGAGGCGTTTTCCATTCAG
TTTTTCAAGCAGCTAGTGACCGGCGAGCTGCCCCCAGTCAAGCTCCCCTG
GGCTGTGGTCGACGTCCGCGACGTGGCCAAAGCCCACGTCCGCGCCTGCC
AACATACGCCTGCCGTCGGCCGCTACCTCTTAACGAGCGCCACATTCAGC
CTTCGTGAGATTCTGGATTGCGTGCGTGATAAAATTTGGCGACCATTGTT
GCGCATCTCCGTCCCCAAAGCAGCGTTGTGGCTCGGGTTTTACACGGGAA
TGGTCGGCAAGAAGTTGTCGAAGGACGATATCATCCATAACGTGGGGTAT
CGCATCTTGTTTGATAGCAGCAAGGCGCGGCGGGAGTTGATGCCGGAAGG
GTTTGTGGAGCCGAGGGAAACATTTAGGGAGATGTACACCAGTTTGCAGG
ATCACAAGATTTTGGGGACATTTAATTAGCTAGTATGGTGATCGGATGGG
TGTGAAAAGCAAGGTGGATTTTGTGTAAGTGGTAATGTTGCAGGAATCTA
TAAATGGGTATTGGCAGAGGCTCGGTAACAGCGGCGCAGCAAAAAAAACT
AAGAGGATTGTGCGGTGAAAAGAGAGAAAAGAGTAACCCTTTTGAGAGAG
TGTGCGTGGCGGTCTATTTGTGTGGAAGTAGACGGTGGAAGTCGGGAGAG
GGGCCTGGTGAGAAGAGCACCAGGGGGGCGATGAAGAAATGTGTGCGTGA
AC
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protein sequence of NO04G00670.1

>NO04G00670.1-protein ID=NO04G00670.1-protein|Name=NO04G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MVAPPPSTSETRSTSSNITTSTFIPTNAQTSGVIVTVTGAAGYLGEHLVK
TFLEAGYTVRGTLRDPSKQEKVEVLKALPGAAERLTLHAADLLVPGSFDA
VVEGATYVIHSASPVALEVVDDPQETLIRPAVQGTENVLDSVQKSTTVKR
VVLTGSFRAVFGLGDEHPKGYVYTEKDWNVKSSLENNQGYALSKLLAEKA
AWAVVEHVKPTTWDMVVLNPGLIFGPLLSRHHEEAFSIQFFKQLVTGELP
PVKLPWAVVDVRDVAKAHVRACQHTPAVGRYLLTSATFSLREILDCVRDK
IWRPLLRISVPKAALWLGFYTGMVGKKLSKDDIIHNVGYRILFDSSKARR
ELMPEGFVEPRETFREMYTSLQDHKILGTFN*
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mRNA from alignment at chr4:236137..238111+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00670.1 ID=NO04G00670.1|Name=NO04G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp|location=Sequence derived from alignment at chr4:236137..238111+ (Nannochloropsis oceanica)
CAACAGTTGCCAACAGCTGTTCCAAAGTACTGTTGAGTTCCACCGGGAGC
ACTTTCCCACATCATTTTACCATCTAGCACTTTGTCCTCGGCTCCTCTTT
TCGTTCTCATAGGTAATCAGAGACATTCAACTTGATTGCTTACCATCAAC
CTCCGTCTATAGCCCCACAAGCCGCACAAAGCCATGGTCGCGCCTCCTCC
CAGTACCAGCGAAACCAGAAGTACCAGCAGCAACATCACTACTTCGACAT
TCATTCCTACAAATGCTCAGACCAGCGGTGTGATTGTCACTGTCACAGGC
GCGGCAGGTTATCTGGGAGAGCACTTGGTCAAGACTTTTCTCGAGGCAGG
TTACACGGTCCGCGGCACATTGCGTGATCCCAGCAAGCAAGAGAAGGTCG
AGGTCTTGAAGGCCCTTCCCGGTGCCGCCGAGCGCCTGACTCTCCACGCC
GCCGATCTTCTCGTCCCCGGTTCGTTCGATGCAGTGGTGGAAGGGGCGAC
GTATGTGATCCATAGCGCATCGCCTGTCGCTCTGGAGGTGGTGGATGACC
CTCAGGAGACGCTGATCCGCCCCGCCGTACAAGGCACCGAGAACGTGCTG
GATTCTGTCCAAAAGTCTACCACTGTCAAGCGCGTTGTCCTGACTGGTTC
CTTTCGCGCCGTCTTCGGTCTTGGAGATGAACACCCCAAGGGCTATGTGT
ACACCGGTAAGTTATTCATATTTGGTTTGTCTCCATGCATTTTCATCTCT
ATTCCGTCCGTATTTTGTGCTCCCCGTCTGGAATATCACGGTGATGCTGC
TCCTGAAAGACATATTATGACATCCATGCCTCAGTCCCTACTCGAAATGA
GATCACCCCCTTAAAAACACTTTCTCTCTTCCCCCCATCCCCCTCCCTGC
AGAGAAAGACTGGAACGTCAAGTCTTCCTTGGAGAACAACCAAGGGTACG
CCCTCAGCAAGCTGCTTGCTGAGAAAGCCGCCTGGGCGGTAGTCGAGCAT
GTGAAGCCCACCACGTGGGACATGGTCGTCCTAAATCCAGGATTGATTTT
CGGGCCGTTGCTATCCAGGCACCACGAGGAGGCGTTTTCCATTCAGTTTT
TCAAGCAGGTAGGGATCGATATGAATTTTGGGGGTGGATAAGCGGAGGGT
ATCACCTTCACTTTTCGTCGTTTATCACATCTACGTTTATGGCGGGGTTT
TGTTTTTTACCTGAGCGTGCCTTTCTTCTCATTTCTTTTTTGCCTACGCT
TTTCCTCCCTCTTTTCCCCCCCATCCCACCCCCAGCTAGTGACCGGCGAG
CTGCCCCCAGTCAAGCTCCCCTGGGCTGTGGTCGACGTCCGCGACGTGGC
CAAAGCCCACGTCCGCGCCTGCCAACATACGCCTGCCGTCGGCCGCTACC
TCTTAACGAGCGCCACATTCAGCCTTCGTGAGATTCTGGATTGCGTGCGT
GATAAAATTTGGCGACCATTGTTGCGCATCTCCGTCCCCAAAGCAGCGTT
GTGGCTCGGGTTTTACACGGGAATGGTCGGCAAGAAGTTGTCGAAGGACG
ATATCATCCATAACGTGGGGTATCGCATCTTGTTTGATAGCAGCAAGGCG
CGGCGGGAGTTGATGCCGGAAGGGTTTGTGGAGCCGAGGGAAACATTTAG
GGAGATGTACACCAGTTTGCAGGATCACAAGATTTTGGGGACATTTAATT
AGCTAGTATGGTGATCGGATGGGTGTGAAAAGCAAGGTGGATTTTGTGTA
AGTGGTAATGTTGCAGGAATCTATAAATGGGTATTGGCAGAGGCTCGGTA
ACAGCGGCGCAGCAAAAAAAACTAAGAGGATTGTGCGGTGAAAAGAGAGA
AAAGAGTAACCCTTTTGAGAGAGTGTGCGTGGCGGTCTATTTGTGTGGAA
GTAGACGGTGGAAGTCGGGAGAGGGGCCTGGTGAGAAGAGCACCAGGGGG
GCGATGAAGAAATGTGTGCGTGAAC
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Coding sequence (CDS) from alignment at chr4:236137..238111+

>NO04G00670.1 ID=NO04G00670.1|Name=NO04G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr4:236137..238111+ (Nannochloropsis oceanica)
ATGGTCGCGCCTCCTCCCAGTACCAGCGAAACCAGAAGTACCAGCAGCAA
CATCACTACTTCGACATTCATTCCTACAAATGCTCAGACCAGCGGTGTGA
TTGTCACTGTCACAGGCGCGGCAGGTTATCTGGGAGAGCACTTGGTCAAG
ACTTTTCTCGAGGCAGGTTACACGGTCCGCGGCACATTGCGTGATCCCAG
CAAGCAAGAGAAGGTCGAGGTCTTGAAGGCCCTTCCCGGTGCCGCCGAGC
GCCTGACTCTCCACGCCGCCGATCTTCTCGTCCCCGGTTCGTTCGATGCA
GTGGTGGAAGGGGCGACGTATGTGATCCATAGCGCATCGCCTGTCGCTCT
GGAGGTGGTGGATGACCCTCAGGAGACGCTGATCCGCCCCGCCGTACAAG
GCACCGAGAACGTGCTGGATTCTGTCCAAAAGTCTACCACTGTCAAGCGC
GTTGTCCTGACTGGTTCCTTTCGCGCCGTCTTCGGTCTTGGAGATGAACA
CCCCAAGGGCTATGTGTACACCGAGAAAGACTGGAACGTCAAGTCTTCCT
TGGAGAACAACCAAGGGTACGCCCTCAGCAAGCTGCTTGCTGAGAAAGCC
GCCTGGGCGGTAGTCGAGCATGTGAAGCCCACCACGTGGGACATGGTCGT
CCTAAATCCAGGATTGATTTTCGGGCCGTTGCTATCCAGGCACCACGAGG
AGGCGTTTTCCATTCAGTTTTTCAAGCAGCTAGTGACCGGCGAGCTGCCC
CCAGTCAAGCTCCCCTGGGCTGTGGTCGACGTCCGCGACGTGGCCAAAGC
CCACGTCCGCGCCTGCCAACATACGCCTGCCGTCGGCCGCTACCTCTTAA
CGAGCGCCACATTCAGCCTTCGTGAGATTCTGGATTGCGTGCGTGATAAA
ATTTGGCGACCATTGTTGCGCATCTCCGTCCCCAAAGCAGCGTTGTGGCT
CGGGTTTTACACGGGAATGGTCGGCAAGAAGTTGTCGAAGGACGATATCA
TCCATAACGTGGGGTATCGCATCTTGTTTGATAGCAGCAAGGCGCGGCGG
GAGTTGATGCCGGAAGGGTTTGTGGAGCCGAGGGAAACATTTAGGGAGAT
GTACACCAGTTTGCAGGATCACAAGATTTTGGGGACATTTAATTAG
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Synonyms
Publications