NO04G00400.1, NO04G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00400.1
Unique NameNO04G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr4:162710..165286 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:162710..165286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00400.1 vs.
Match: XP_005854226.1 (hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526]; XP_005855066.1 hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526]; EKU21289.1 hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526]; EKU22133.1 hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 226.1 bits (575), Expect = 1.500e-55
Identity = 129/270 (47.78%), Postives = 173/270 (64.07%), Query Frame = 0 
Query:   26 RADSLFGKTRQQHQQGEAQAGETAAAPGRFTFERRRMTSEETAAAEASKVETGLDADINILKMIKAGTFDFFKDALPDMLD-------------TVTKEEAGLIFENFKFMKTTKAWKAFEATGNADDEEAVSAAMIKSVQEMGKVIIAARPITKDADSVTAVTDEFIQDLKDNDPSSAGLFDAVKSGDAMAIATLQQKFADKYLGGVDLDAFADNEWIERARAKFFANEDLLRLIDDNDVLDILRNPELKLHKASEMGSADPSRLLSSL 283
            +  SLF K  +QH Q   ++ +T+    + +  +RR +S+ +    A+K  T LD D ++++ IKAGTFDFF+D+LP ML+             TVTK EA  IFE F FMKTT  WK F  TG   DE+A +AAM+++V+EMG  +I AR ITKDAD+V    ++F+ DLK ND SS  L  + K G   AIATLQQKF D+YLGG+DL+ F   +W++RAR  FFA+E+LLR + D  VL  LRNP L+  K SE   ADP+R+LSSL
Sbjct:   26 QGSSLFDKIHEQHPQKGDKSSKTSR---KSSSGQRRASSQASTEEAATKSSTVLDPDFDMIRRIKAGTFDFFRDSLPGMLEYVGGDGSEKDWEETVTKREARQIFEQFPFMKTTNVWKRFIETGEVADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETF---QWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSL 289
The following BLAST results are available for this feature:
BLAST of NO04G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854226.11.500e-5547.78hypothetical protein NGA_0223401 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00400NO04G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00400.1NO04G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00400.1.cds1NO04G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00400.1.cds2NO04G00400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00400.1.cds3NO04G00400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00400.1.cds4NO04G00400.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00400.1.cds5NO04G00400.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00400.1.cds6NO04G00400.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00400.1.cds7NO04G00400.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00400.1 ID=NO04G00400.1|Name=NO04G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
TCCTTTCATTCTTCCACGCCCTAGGCGGCCGAAGCCTCTCTGGTCGATTG
CGTCTGTCTAAACACACACTCTCTCTCATCACAAAGTACCTTACAATCAT
TTGCGTCGGGCATGCTGCACAGCACGCCTATCAGCCATTGTTCGCTCCAC
CCCACAGTTTCAAATGCTCGCCTAACTCAACTTTTCCTCCACTAATACAA
ACATCGATTACCTACCCACAGCAGAGGGACGTCGCATCCCTGCCCAAACC
ATCATCACCTGCATACCATGTCACCACGTATCTCCGTTACCTTATTGGTT
CTCGCTGTGATCGCCCTGATCACGGTGCAAGCCAAGGACCGCCGCGCCGA
CTCGCTCTTTGGCAAGACCCGTCAACAACACCAACAAGGAGAAGCCCAAG
CAGGCGAGACCGCCGCGGCCCCAGGCAGATTCACATTTGAACGTCGTCGT
ATGACTTCCGAGGAGACGGCCGCGGCCGAGGCCAGCAAGGTGGAGACCGG
CCTAGACGCGGACATTAATATCCTTAAGATGATCAAGGCCGGCACCTTCG
ACTTCTTCAAGGACGCTCTCCCTGACATGCTTGACACCGTGACCAAAGAG
GAAGCCGGGCTCATCTTCGAGAACTTTAAGTTCATGAAGACGACCAAGGC
ATGGAAGGCCTTCGAGGCCACCGGCAACGCCGACGACGAGGAGGCGGTCT
CCGCAGCCATGATCAAGTCGGTGCAAGAGATGGGAAAGGTGATAATTGCC
GCTCGCCCTATCACCAAGGACGCCGACTCCGTCACGGCTGTCACGGATGA
GTTCATCCAGGATCTGAAGGACAACGACCCTTCATCCGCCGGCCTGTTTG
ACGCGGTCAAGAGCGGGGATGCCATGGCCATCGCTACGCTGCAGCAGAAG
TTTGCAGACAAGTATCTGGGTGGCGTCGATTTGGATGCGTTCGCGGACAA
CGAGTGGATCGAGCGGGCCCGAGCCAAGTTTTTCGCCAATGAGGACTTGC
TCCGCCTCATCGACGACAATGACGTTTTGGATATACTCAGAAACCCTGAG
CTCAAGCTTCACAAGGCCAGCGAGATGGGCAGCGCCGATCCCTCCCGATT
GTTGTCCTCCCTTATGAGCAGCCACGTGAACAACCACGGGAATGGGCAGG
AGGCTATGGCCGGTGGGATTTGAGGAGGATACCGAGGGAGGGAGGGAGGG
AGGGAGGGAGGG
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protein sequence of NO04G00400.1

>NO04G00400.1-protein ID=NO04G00400.1-protein|Name=NO04G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MSPRISVTLLVLAVIALITVQAKDRRADSLFGKTRQQHQQGEAQAGETAA
APGRFTFERRRMTSEETAAAEASKVETGLDADINILKMIKAGTFDFFKDA
LPDMLDTVTKEEAGLIFENFKFMKTTKAWKAFEATGNADDEEAVSAAMIK
SVQEMGKVIIAARPITKDADSVTAVTDEFIQDLKDNDPSSAGLFDAVKSG
DAMAIATLQQKFADKYLGGVDLDAFADNEWIERARAKFFANEDLLRLIDD
NDVLDILRNPELKLHKASEMGSADPSRLLSSLMSSHVNNHGNGQEAMAGG
I*
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mRNA from alignment at chr4:162710..165286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00400.1 ID=NO04G00400.1|Name=NO04G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2577bp|location=Sequence derived from alignment at chr4:162710..165286+ (Nannochloropsis oceanica)
TCCTTTCATTCTTCCACGCCCTAGGCGGCCGAAGCCTCTCTGGTCGATTG
CGTCTGTCTAAACACACACTCTCTCTCATCACAAAGTACCTTACAATCAT
TTGCGTCGGGCATGCTGCACAGCACGCCTATCAGCCATTGTTCGCTCCAC
CCCACAGTTTCAAATGCTCGCCTAACTCAACTTTTCCTCCACTAATACAA
ACATCGATTACCTACCCACAGCAGAGGGACGTCGCATCCCTGCCCAAACC
ATCATCACCTGCATACCATGTCACCACGTATCTCCGTTACCTTATTGGTT
CTCGCTGTGATCGCCCTGATCACGGTGCAAGCCAAGGACCGCCGCGCCGA
CTCGCTCTTTGGCAAGACCCGTCAACAACACCAACAAGGAGAAGCCCAAG
CAGGCGAGACCGCCGCGGCCCCAGGCAGATTCACATTTGAACGTCGTCGT
ATGACTTCCGAGGAGACGGCCGCGGCCGAGGCCAGCAAGGTGGAGACCGG
CCTAGACGCGGACATTAATATCCTTAAGTGAGTCCGGCGGAAGGGAGAGG
AGGGAGGGGGGATGGTTGAGAGATAGGGAGGGAGAAGAATGCATTGAGGA
TGACATGGGCGATCCCCTCCAAGAAATGAGAAAGGGAATCGTTTCGAGGA
AGGAGGCGTCCTCGTAGTGTAAAGGAATCTCACGCTCTTCGCACTGTCTG
TACGACCGACAGGATGATCAAGGCCGGCACCTTCGACTTCTTCAAGGACG
CTCTCCCTGACATGCTTGAGTAAGCCCCCGTAGAAAAAGAGGGAGGAAGA
GGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAG
AATGGCCAGGAGAAGGCCTGTGTGTTTGGTTTTATGCGCATCGATATCTC
CCTTCAGGGCACGATCACTTCACCCGTGTCGTGATACCTCGGGATGAGAG
ACCAAGGCCTTCTTCTCATCCTCCCTCCCTCCTTTCGTCCCTCCCCCTTT
CCCCTCAGCACCGTGACCAAAGAGGAAGCCGGGCTCATCTTCGAGAACTT
TAAGTTCATGAAGACGACCAAGGCATGGAAGGCCTTCGAGGCCACCGGCA
ACGCCGACGACGAGGAGGCGGTACGTCATTCGACTTGCCCCTTTTCCACC
ATGCATGCATGCCTTCCCTTCCTCCCTTCCTCCCTTCCTCAGTCGTGCTC
CTGTCCTTCCATACATGCCTTACCTTCCTCTCTCCTTCCCTTTTTTAATA
ATATTAATAATAATAATAATGTTGTCCTCCCGCGTTGCATTTACTGGCAT
GGGTAGCGTCAGCGATGACAATGATTATCCTGAAAAGCCGGGGATTTGCT
TAACCCCCCTCCCCCCTCCCCCCTCTCCCCTCCCCTTCCTTGCTTCCTGA
ATCGCTCCCTCCCTCCCGCCCTCCCTACAGGTCTCCGCAGCCATGATCAA
GTCGGTGCAAGAGATGGGAAAGGTGATAATTGCCGCTCGCCCTATCACCA
AGGACGCCGACTCCGTCACGGCTGTCACGGATGAGTTCATCCAGGATGTA
GGGAGGGAGGGAAGAAGGAAGGGAGGGGCGGAGCGAGGGGAAATGAGTGT
CCCTGCCTGAAATCAAAGGAGGTCTGCCGTTAGGCACATGCGTTTGAGGC
CCTCACTCGCCCGCCCGCCCTCCCTCCCTCCCTCCCTCGCAGCTGAAGGA
CAACGACCCTTCATCCGCCGGCCTGTTTGACGCGGTCAAGAGCGGGGATG
CCATGGCCATCGCTACGCTGCAGCAGAAGTTTGCAGACAAGTATCTGGGT
GGCGTCGATTTGGATGCGTTCGCGGTAGGAAGATTCGGGAGGGAAGATTC
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGCATGCCTCTCTCTGTG
CCAATGGCCCTCCCATGGCATTCCTCAGTGTCTGCCTGAGTAGCAAGGAT
ACCCTCCCATCCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAG
GACAACGAGTGGATCGAGCGGGCCCGAGCCAAGTTTTTCGCCAATGAGGA
CTTGCTCCGCCTCATCGACGACAATGACGTTTTGGATATACTCAGAAACC
CTGAGCTCAAGCTTCACAAGGCACGGCCGCCCTCCCTCCCTCCCTCCCTC
CCTCTCTCCTTCCGTTGTTCCACTTGGACGCTGACATCGTCATCATCGAT
CAAAAAGCCTGAGCTTAATCTCCACGACGTCAACCCTTCCTCCCTCCCTC
CCTCCCTCCCTTCATCATTTCTTCTCTTTCTTCCCCTTCTCTCTCTTTCG
CCCCTGAGGTTTCAGACCTTTTATTCTTTCTCACGCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTGTTCCCTCCTCCCCTTCCCTCC
CTCCTTACTCTTTCTCTCCCCTCCCTCCAGGCCAGCGAGATGGGCAGCGC
CGATCCCTCCCGATTGTTGTCCTCCCTTATGAGCAGCCACGTGAACAACC
ACGGGAATGGGCAGGAGGCTATGGCCGGTGGGATTTGAGGAGGATACCGA
GGGAGGGAGGGAGGGAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at chr4:162710..165286+

>NO04G00400.1 ID=NO04G00400.1|Name=NO04G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr4:162710..165286+ (Nannochloropsis oceanica)
ATGTCACCACGTATCTCCGTTACCTTATTGGTTCTCGCTGTGATCGCCCT
GATCACGGTGCAAGCCAAGGACCGCCGCGCCGACTCGCTCTTTGGCAAGA
CCCGTCAACAACACCAACAAGGAGAAGCCCAAGCAGGCGAGACCGCCGCG
GCCCCAGGCAGATTCACATTTGAACGTCGTCGTATGACTTCCGAGGAGAC
GGCCGCGGCCGAGGCCAGCAAGGTGGAGACCGGCCTAGACGCGGACATTA
ATATCCTTAAGATGATCAAGGCCGGCACCTTCGACTTCTTCAAGGACGCT
CTCCCTGACATGCTTGACACCGTGACCAAAGAGGAAGCCGGGCTCATCTT
CGAGAACTTTAAGTTCATGAAGACGACCAAGGCATGGAAGGCCTTCGAGG
CCACCGGCAACGCCGACGACGAGGAGGCGGTCTCCGCAGCCATGATCAAG
TCGGTGCAAGAGATGGGAAAGGTGATAATTGCCGCTCGCCCTATCACCAA
GGACGCCGACTCCGTCACGGCTGTCACGGATGAGTTCATCCAGGATCTGA
AGGACAACGACCCTTCATCCGCCGGCCTGTTTGACGCGGTCAAGAGCGGG
GATGCCATGGCCATCGCTACGCTGCAGCAGAAGTTTGCAGACAAGTATCT
GGGTGGCGTCGATTTGGATGCGTTCGCGGACAACGAGTGGATCGAGCGGG
CCCGAGCCAAGTTTTTCGCCAATGAGGACTTGCTCCGCCTCATCGACGAC
AATGACGTTTTGGATATACTCAGAAACCCTGAGCTCAAGCTTCACAAGGC
CAGCGAGATGGGCAGCGCCGATCCCTCCCGATTGTTGTCCTCCCTTATGA
GCAGCCACGTGAACAACCACGGGAATGGGCAGGAGGCTATGGCCGGTGGG
ATTTGA
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Synonyms
Publications