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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:116765..119151 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G00260.2 vs.
Match: EWM28430.1 (Yippee-like protein [Nannochloropsis gaditana]) HSP 1 Score: 128.6 bits (322), Expect = 2.800e-26 Identity = 102/240 (42.50%), Postives = 129/240 (53.75%), Query Frame = 0
Query: 22 QSHQEGDSDSDEEVEHLQEEEENDE----EEGEGPVVPWWAQQLPQAPAEEGGRSDQQ-----------QHQQQQQQQRQHESGRCEGSVTYLLRQLFFPLLRPLSAALKKAQGHAVGQQHQQQQQQQHPHHHGERSEDGSYTRQEQQQKKKNKKDEDEGRMVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQY 247
Q Q+ +EE E +EEEE D EE E +VPWWA Q EEG RSD + ++++ + E GR G P +R GH VG + + P DG+ Q Q+ +KK K+E+ R+ L GP VY+C CR HLATDMEVVSRAF GRGGRAFLLD VVN+S GPSE+R+LMTGLH+VSD+ CA C TV+GW+Y
Sbjct: 80 QQQQQQQQQYEEEEEEEEEEEEGDGSEEGEEEEAGMVPWWAVQQQHRNLEEG-RSDNRYGELREHEYASDEEEEEDEDEVGEEGRGGG-----------PFVR--------RTGH-VGFASVSRSHRSFPG-------DGTARTQSQRTRKKKAKEEEGWRV--LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKY 289
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G00260.2 ID=NO04G00260.2|Name=NO04G00260.2|organism=Nannochloropsis oceanica|type=mRNA|length=2088bp ACTGTAGCGGGAGTGTCGCTGTTACAACAAGCGCCGCATAAGAAGTGGGA GACGCAAAAGAGCTGAGATATGGCCACGACGGTGATGCCTTCAACGCCTT TCTTCGTTCACCCTCCTGCTCATCCTCCTGTGCAGAGCCACCAGGAGGGC GATAGCGATAGCGACGAAGAGGTTGAGCACTTGCAGGAGGAGGAGGAAAA TGATGAGGAAGAGGGAGAGGGCCCGGTGGTACCTTGGTGGGCGCAGCAGC TCCCGCAAGCTCCCGCGGAAGAAGGTGGGAGGTCAGATCAGCAGCAGCAC CAACAGCAACAGCAGCAGCAACGGCAGCACGAAAGTGGTCGTTGCGAGGG GTCCGTGACATACCTTCTCCGTCAGCTCTTTTTCCCGCTCCTGAGGCCTC TGTCCGCGGCATTAAAAAAGGCGCAAGGGCATGCAGTAGGGCAACAGCAC CAACAGCAGCAGCAGCAGCAGCACCCCCATCACCATGGAGAACGGTCGGA AGATGGATCGTATACGAGACAAGAGCAGCAACAGAAAAAGAAGAACAAGA AGGACGAGGACGAGGGTAGGATGGTGCACCTGGACGGGCCTTCGGTTTAT TCCTGTTGCATGTGTCGCACGCATTTGGCCACGGATATGGAGGTGGTTTC AAGGGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCCTCGACAAAGTCG TCAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTTATGACGGGCCTC CACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACACAGTGCTGGGGTG GCAATATGTACGTAGGGAGAGGGAGGGAGGGAGGAAGGGGTCAGGGAGGG AGGAATGGAAAGAAGGATGAAAGACGGAGAACAAGGGAATCTCGACGAAT GGGAGAAAGGGAGGGAGAGAGAGAGGGAACGGCATCGGACTCACGTCGTA TTGTTTTCATTACGCATGCATGCAGGACAAGGCATTTGAGCCCAGTCAGA AGTACAAGGAGGGGAAATTCGTCCTGGAGATGGTGCACGTGCGCTTGGAG GAGGAAGAGGAGGAAGAGGAGGCGGAATGGTGAAAGAGGGAGGGAGGGAG AAGGGGAGGGAGAGTGTGAATACGAAGGAGATGTGAGTAGATATCAAGGA GGTGTGAAGCAAGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGA GGGAGGGATAGTGGCGGTGTACAGATAGACGTCATTTATGGGTTCAAACA ATAGAAAGAAAATGTAGAGAGTGCACGAGAAAAAGGAGAAGAAGCGTAAG AAAGAGAGCAGAGAAGGAGGGGACAATTAAGAGAGGGGAAGAAGAAGACG AAAAAGACGAAGAACAAGAAGAAGAAGGAGGAGTAGAAGAAGACAAAGAG AGAGCGAAAGAGAGAGAGAGAGGATGATGGATATAGCTAGGGGAGAAGAC GGTTTGCCATCACGCCACTGACAAACACTCATGGTTCGGTGAAAAACAAC AAGGAGAGATAGAAATTGACGGCGATGTAGCAGAAGAAGGAAGGAAGCAA GTGTGTGTATATATGTGAGGGTCATCTCGGCGGGAGTCCATGCGAGATCG TGCAAATGTCCGAGGAAATCGACAAAGGACAAAGAGGGGCTTGGAGCGAA GGAGGAGGGAGAGTAATATCAGCAGGTCTCATGTCGTGTGAGGTTTCCCA CCCTCTGTTTGCATTATCGTCGCTCTGCCTGTCGTTGCGGTTGTTGTTGT CGTCGGGGTGATGAAAAAGAGCGAGAGAGAACGCGCATGAGCGTTGATGA AATAGTGTTGATGTATTTCATAGTGTGGATGTAATGCGCCCATGCCCCGT GTAGAGAGGAAGGATAAGAAGAACAGGAAGAAGACGACGACGACGACGAA GAAACAGACGAATGAGAAGATGAAGACGACGACGACGAAGAAGAATAAGT AGAAGAAGAAGACGAAGAAAAGAATAGAGGAAGGAAACGGGGAGTGGGAT GATTGAGCAGAGGAAGAGAAGAAATCCCGCCTTGATACAAATCCCTAAAA CCAAAACACACAAAAGATGGAACGAATCAAAACAGCCT back to topprotein sequence of NO04G00260.2 >NO04G00260.2-protein ID=NO04G00260.2-protein|Name=NO04G00260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp MATTVMPSTPFFVHPPAHPPVQSHQEGDSDSDEEVEHLQEEEENDEEEGE GPVVPWWAQQLPQAPAEEGGRSDQQQHQQQQQQQRQHESGRCEGSVTYLL RQLFFPLLRPLSAALKKAQGHAVGQQHQQQQQQQHPHHHGERSEDGSYTR QEQQQKKKNKKDEDEGRMVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGR GGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRRE REGGRKGSGREEWKEG* back to topmRNA from alignment at chr4:116765..119151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G00260.2 ID=NO04G00260.2|Name=NO04G00260.2|organism=Nannochloropsis oceanica|type=mRNA|length=2387bp|location=Sequence derived from alignment at chr4:116765..119151- (Nannochloropsis oceanica) ACTGTAGCGGGAGTGTCGCTGTTACAACAAGCGCCGCATAAGAAGTGGGA
GACGCAAAAGAGCTGAGATATGGCCACGACGGTGATGCCTTCAACGCCTT
TCTTCGTTCACCCTCCTGCTCATCCTCCTGTGCAGAGCCACCAGGAGGGC
GATAGCGATAGCGACGAAGAGGTTGAGCACTTGCAGGAGGAGGAGGAAAA
TGATGAGGAAGAGGGAGAGGGCCCGGTGGTACCTTGGTGGGCGCAGCAGC
TCCCGCAAGCTCCCGCGGAAGAAGGTGGGAGGTCAGATCAGCAGCAGCAC
CAACAGCAACAGCAGCAGCAACGGCAGCACGAAAGTGGTCGTTGCGAGGG
GTCCGTGACATACCTTCTCCGTCAGCTCTTTTTCCCGCTCCTGAGGCCTC
TGTCCGCGGCATTAAAAAAGGCGCAAGGGCATGCAGTAGGGCAACAGCAC
CAACAGCAGCAGCAGCAGCAGCACCCCCATCACCATGGAGAACGGTCGGA
AGATGGATCGTATACGAGACAAGAGCAGCAACAGAAAAAGAAGAACAAGA
AGGACGAGGACGAGGGTAGGATGGTGCACCTGGACGGGCCTTCGGTTTAT
TCCTGTTGCATGTGTCGCACGCATTTGGCCACGGATATGGAGGTGGTTTC
AAGGGTGAGGAAGACGGGAGGGTGGCAAGGCGGCGGGGGGGGAGGGAGGG
GGGATAGTCGAAGGGGATGAAGGGGAATGTTGGGAACACTAGATGCATGT
ATCACACACAGACATAACTCGTCCCCTCTCCCGCCTTAACACCTCACACA
TACATATATAGGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCCTCGAC
AAAGTGTGAGTACCTCCTCATCCCTCCCTCCCTCTCTTTCCCTCCCACCC
ATTTTTCCCTTTCGCCCGCCAACTACTTATGCTCGACGGCCTTGCGATTC
CCTCCCTCCCTCCCTCCCTCTCTCCCTTCCTCCCCTTCCTCACCCAGCGT
CAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTTATGACGGGCCTCC
ACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACACAGTGCTGGGGTGG
CAATATGTACGTAGGGAGAGGGAGGGAGGGAGGAAGGGGTCAGGGAGGGA
GGAATGGAAAGAAGGATGAAAGACGGAGAACAAGGGAATCTCGACGAATG
GGAGAAAGGGAGGGAGAGAGAGAGGGAACGGCATCGGACTCACGTCGTAT
TGTTTTCATTACGCATGCATGCAGGACAAGGCATTTGAGCCCAGTCAGAA
GTACAAGGAGGGGAAATTCGTCCTGGAGATGGTGCACGTGCGCTTGGAGG
AGGAAGAGGAGGAAGAGGAGGCGGAATGGTGAAAGAGGGAGGGAGGGAGA
AGGGGAGGGAGAGTGTGAATACGAAGGAGATGTGAGTAGATATCAAGGAG
GTGTGAAGCAAGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAG
GGAGGGATAGTGGCGGTGTACAGATAGACGTCATTTATGGGTTCAAACAA
TAGAAAGAAAATGTAGAGAGTGCACGAGAAAAAGGAGAAGAAGCGTAAGA
AAGAGAGCAGAGAAGGAGGGGACAATTAAGAGAGGGGAAGAAGAAGACGA
AAAAGACGAAGAACAAGAAGAAGAAGGAGGAGTAGAAGAAGACAAAGAGA
GAGCGAAAGAGAGAGAGAGAGGATGATGGATATAGCTAGGGGAGAAGACG
GTTTGCCATCACGCCACTGACAAACACTCATGGTTCGGTGAAAAACAACA
AGGAGAGATAGAAATTGACGGCGATGTAGCAGAAGAAGGAAGGAAGCAAG
TGTGTGTATATATGTGAGGGTCATCTCGGCGGGAGTCCATGCGAGATCGT
GCAAATGTCCGAGGAAATCGACAAAGGACAAAGAGGGGCTTGGAGCGAAG
GAGGAGGGAGAGTAATATCAGCAGGTCTCATGTCGTGTGAGGTTTCCCAC
CCTCTGTTTGCATTATCGTCGCTCTGCCTGTCGTTGCGGTTGTTGTTGTC
GTCGGGGTGATGAAAAAGAGCGAGAGAGAACGCGCATGAGCGTTGATGAA
ATAGTGTTGATGTATTTCATAGTGTGGATGTAATGCGCCCATGCCCCGTG
TAGAGAGGAAGGATAAGAAGAACAGGAAGAAGACGACGACGACGACGAAG
AAACAGACGAATGAGAAGATGAAGACGACGACGACGAAGAAGAATAAGTA
GAAGAAGAAGACGAAGAAAAGAATAGAGGAAGGAAACGGGGAGTGGGATG
ATTGAGCAGAGGAAGAGAAGAAATCCCGCCTTGATACAAATCCCTAAAAC
CAAAACACACAAAAGATGGAACGAATCAAAACAGCCT back to topCoding sequence (CDS) from alignment at chr4:116765..119151- >NO04G00260.2 ID=NO04G00260.2|Name=NO04G00260.2|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr4:116765..119151- (Nannochloropsis oceanica) ATGGCCACGACGGTGATGCCTTCAACGCCTTTCTTCGTTCACCCTCCTGC TCATCCTCCTGTGCAGAGCCACCAGGAGGGCGATAGCGATAGCGACGAAG AGGTTGAGCACTTGCAGGAGGAGGAGGAAAATGATGAGGAAGAGGGAGAG GGCCCGGTGGTACCTTGGTGGGCGCAGCAGCTCCCGCAAGCTCCCGCGGA AGAAGGTGGGAGGTCAGATCAGCAGCAGCACCAACAGCAACAGCAGCAGC AACGGCAGCACGAAAGTGGTCGTTGCGAGGGGTCCGTGACATACCTTCTC CGTCAGCTCTTTTTCCCGCTCCTGAGGCCTCTGTCCGCGGCATTAAAAAA GGCGCAAGGGCATGCAGTAGGGCAACAGCACCAACAGCAGCAGCAGCAGC AGCACCCCCATCACCATGGAGAACGGTCGGAAGATGGATCGTATACGAGA CAAGAGCAGCAACAGAAAAAGAAGAACAAGAAGGACGAGGACGAGGGTAG GATGGTGCACCTGGACGGGCCTTCGGTTTATTCCTGTTGCATGTGTCGCA CGCATTTGGCCACGGATATGGAGGTGGTTTCAAGGGCCTTCCACGGACGG GGTGGACGTGCCTTTCTCCTCGACAAAGTCGTCAACATATCACCTGGTCC CTCGGAGCAGCGCATGCTTATGACGGGCCTCCACTCCGTGTCCGATTTGA GGTGTGCCACATGTCACACAGTGCTGGGGTGGCAATATGTACGTAGGGAG AGGGAGGGAGGGAGGAAGGGGTCAGGGAGGGAGGAATGGAAAGAAGGATG A back to top
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