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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1659810..1663968 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05790.1 vs.
Match: ARF12494.1 (hypothetical protein Klosneuvirus_6_56 [Klosneuvirus KNV1]) HSP 1 Score: 117.1 bits (292), Expect = 1.100e-22 Identity = 77/238 (32.35%), Postives = 121/238 (50.84%), Query Frame = 0
Query: 94 SKSMVPSNTTVVVIYPEVIRGALEIGDIHVRWILAAVGINVAENITDSWNRDDLVFNYATSTGNNIPVSNVLQVVDTPTDGDETDISDEDFNNRDRSGIAWMMRKGPKYHNEIEFIHDIPGYETTKFE-RGAVSSLRKFEYFVSYDPYTYWSWFAAMQGTVSIVYPLANVSKAQW--ALGTFVGSYLQDQNLTEIPGVAYGWEESEIEYARRTMHKLRSFLVNLRKWGAEVTVPRFTR 329
SKS + ++ +VIYPE+I+G VRW+L VGI+ + I +W +DDLVF+Y+T P + Q+ + + + + + RSG +M+RKG ++H I+ +H K + + EYF YDPY+++ AA+ G + I+YPL N +K W G F Q NL+ G+AYG E EIEYA+ T+H + +G E T+ +F +
Sbjct: 73 SKSQIINDENTIVIYPEIIKGNPLNAKYVVRWLLCDVGIHTDKEIYKTWGKDDLVFHYSTFNMKYNP-EKITQLYTIWINPNVKNTNPTE----QRSGSCYMIRKGNQFHKTIKNMHPSDSILLDKNSLEDNIKIFNEKEYFYCYDPYSFYDSIAALCGCIPIIYPLENSNKLDWLKTKGLFQVYLNQRDNLS---GIAYGNEPIEIEYAKNTLHLASQEKQDALNFGLE-TIKKFVK 301
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05790.1 ID=NO03G05790.1|Name=NO03G05790.1|organism=Nannochloropsis oceanica|type=mRNA|length=3972bp
CGATGCCTTATAGCCGCCGACATGCCGGTTTTGAATTCCTTCCCACAATA
GTTTCATGGCCACGAGTTCCCTCTCTTGCCTCAGGGATCTCTTTCCCTTC
CCAAGCGCACACGTGTTTCACCCATGTGTCCATGCCACTGTATTGCCCCG
CCCTTATGCTGCTTGCTTTGACTAGCCAAGCAAGTGCTTCGACCCAGCAG
TCCTTCTCTCATCATCACCCAACGGCTCTCGCTTTCTCCCTTCTTCCGGC
CTGCACATCATAACCTCTATCTGCCCTCCCGACGACCATTGCCAACTCCG
AGCATGGATATAAATGCAGCAAATGCTAGGGTCCCACCCTGTTGCCCTAC
ATCAAGATGCATGTAATGTGCTTTGCCCTCCTTTTGCCAGTGAGGTCATG
GCCCTGCCATCATCATCCCTGGATTTCCTACCACCCGTGCTCATGCCCTT
CTACACCACTCCCTCGTCTCTCGAGGAATGGGTGCGCCGTAGTCCTACCA
CCAACACCTGGGTCCGTTGGCCCCATGTCATGCCATGTCATGGCCCTGGT
TGTGTGCATCGGGCAGCCTCCTGCTGCATGGAAGGCATGGCCTAACCTTC
CCAGCCCTGCTGTTGCTTCCTTTTTTGCGTGCATTACAGCCGCACCCCGG
GGAGCCCTGGACCTACAAGCACGCACCTTACCACACGACTAGGGACCTTT
TGGGAATTTTCAGGGCGTCCAGGTGCGACAGGATGCACGTCTGCGAGAGC
ATAATTGCTGATTGTCCCCGTCCCTCTTTGTTTACCCCCCCTTCTTACCC
CGTGCTCCTACTTCTCTTATCCTCTGAGGGGCTGGGATGCATGATGAGCC
ATTCTTTCCGACCCTTTAGGTCACAGTCGAGAATGCTGGGGAGCTGGTCT
TGGTGTGAGATGCCATCTTGTGCGTGTCCTCGTGGCTCATGCTCCTTCCT
CCCCTGTCCACCGTGCTTTCCTCCCTCTTACTCGAGCTGCGTCACGACCT
TCCGCCACTCCGTGTGTGTATGATGTTGCTATTACCTGTACTACCTGTAC
TCCTTGGATTTCTATTACCATGACAGGAAAGCCAATTACGACAGTACGTC
CTTCCCCCGTCACTCATCCTCCCCACCTCCCTCCTTATCCCATCCTTTTT
GCTCCAGCGCTGTCATGCCGCAAATTTTCCGCTGCACTGACACCAACATC
CACGACGAATGCAAGATTTTCTCTGTCAACAAGCCTCAAAAAGACCGCCA
CCGCCAAAAGTCTTACTCGAACGAAGTGAACCTGACGGTAGACGGCAGGG
TCGTTGTCTTCAAATGCGACGACAACAGGAATTTTCCCTGCGCATGCGTC
ATGGTGTTACTGTGTCAGGTCGTGGATTATTCCGGAAGTTCTATACACGT
AGTGGATGACATTAGGTTTGTGCCGGCCCTGGTGCGGAGAGCCAATAAAC
GAGTGACTACGTAATATAGGCATTTATCCGAATTGTGTTTTGGACGTGTC
CGGGCTATTTTTTAATCGATCTGCTTACGAACTTTTTTCGAACCTTTCCG
TCCTTTCTCACCCTCACTCGATTCAAATTATCCATCCGCATGGCTTTAAA
AACCATATACAATGTAGAGTGCAGGAGGTTGGAAAAAAGCCGGTTCTTCT
TGAAGGGAAGCATTGCGTTTCCCAACGACTTGGTCCAATCCATGTCAGAA
GGTGGCAAGCACCGCAACAAAATGTCCGCATACGGCGTAATGGCCTGTCT
CGGAAAGACTACCTTAATCGACGAATACAATACGGCATACAGCCTATCTG
TATCGCCGCCTTTGGCTTCAAAGATGGACTCCATTTTCGCCCGAGCCGCT
TAGGGGAAGCTTTTTGGCGCCATCCTATTCGTCGGATTCAAGAAGAAGCA
AAGAATTAGGCCAAATGTCATTGTAAATCGATAATAAACAACATACACGG
ATGAAGGGGATCGTCCACACTCAGATCTGGCCACCATTTGTAAGATTCAC
AAGCTGCAGCAACCCACTCATATGACAGAACTACTATTGGTCAAGCCAGT
GTGTTGTGAGACTGACCGTAATAAATATTGTGTTTTTAAAGTTGGCATTA
TGGGCCTGACAATCAGCATCATTTTCCTGGGGGATGTTTGGCTGCTTCGT
TGAAGTAACCTCAGCCATGGGCCTCCAGTGCTATCATATAGGCTGTTTAA
AACCTTGTTCTTCATAAAGTATTTGCATGAGATTTGTGCTTTCATGTAAT
ACATTGTGTAGATGAGCCATCGGCATGATGAATGACGACACAAATCCCAT
TCTACGGCCGAAATGTCAAGATACACACTCCCTACCAACTCGGGCCTAAT
TTTGGCCGTGTCGCGCACTCGCAGCAACAATTGAATCTTATCCGTTGCTT
GGCTGTCGTGGGTTTCAAGCCCCTCGTCGATCACGGCATACCGGCAGGTT
GGTGGTAAAGTCTCTGCGATCCAAAGGATGTTCTCCTCCACACCACCGCG
TTATCGCTAGGAGCGCTGGGAGTGGGGTACATGTACTATCTGAACTATTT
TTTAAAAAGAGCGAACGATATTCCAAACTTCAAGATCGAGCTCTAGCACT
ACCCATCCAAGCTCACCTACACCGCTTGCTCCATTAAATCAGCACCCCTG
CATTCATCCCCCCCCAACCCTTCTCCAAGAAAGATTTTTCAACAGGCGAC
CAAGTGATTTTCAAGCGTTCGAACCATATGGGTCAAAAAATATTTTGGAT
CGCCAACGTCGTGGTTGTAGTAGGCCTCCTATGCATGACAGGATTCGGAT
TGGTATCGCTCAATAGTCGTACATTTTCCAATTCCTTCCCAATAAATCCT
AATATTTCTTCCGTTCCTGAGGATTATGGGCACCATCTCCATTTCATTGT
ACATACTGTAGGCGATTACGATCCAAACCGCGATTGTGGTGGATGCGCCG
TTCTCTGGGAGTTGTATTTCTCGCTAGTGGCACACGGGTTCTCAGCTGCG
AATAATTCAAAATCGATGGTTCCATCCAACACCACCGTCGTTGTGATATA
TCCGGAAGTAATTAGAGGCGCGTTAGAGATCGGTGATATTCATGTGCGCT
GGATTCTGGCTGCTGTTGGCATTAACGTCGCAGAGAATATCACGGACTCC
TGGAATCGCGACGATTTGGTATTCAACTATGCTACAAGCACTGGAAATAA
CATTCCTGTTTCCAACGTGCTACAAGTGGTCGACACTCCAACCGACGGGG
ACGAAACTGACATCTCGGATGAGGATTTTAATAACAGGGATCGGTCAGGA
ATAGCGTGGATGATGAGAAAAGGGCCCAAGTACCACAATGAAATTGAGTT
CATACACGATATACCCGGCTATGAGACGACTAAGTTCGAGAGAGGTGCTG
TTTCGAGTCTACGTAAGTTCGAATACTTCGTCTCATATGATCCATATACA
TACTGGTCTTGGTTTGCTGCCATGCAGGGTACAGTGTCGATTGTGTATCC
CCTTGCCAATGTATCAAAAGCGCAATGGGCGCTTGGTACTTTTGTAGGAT
CATACCTACAGGACCAAAATCTCACTGAAATCCCGGGCGTTGCCTATGGA
TGGGAGGAAAGCGAGATCGAGTATGCTCGGCGGACGATGCATAAGCTCAG
GTCCTTCTTAGTGAACCTTCGCAAATGGGGTGCTGAAGTCACCGTACCAA
GATTCACAAGGGATTGTTTCCGTTTCAAACAGGGAGAGAGGAAATTCTTT
GAAAGCGCATTGATTCTCGAAGATGTATATTCCCACTTATAGCTCTACGT
CGCTTTCTCGAGGTTTGATAACTCAAAGAGCATCACTACTACGGTCTCAC
GCCTTCCTATCGACGGCCTGTAGGTATTAGCGAGACTATAGCCACTTTCC
AGTGGGTGCTCTGATTGGCACTGAGAACTTGATAGAAAACGTGTGCTAAT
AAATATGGGCAGTGGTCTGAGG back to topprotein sequence of NO03G05790.1 >NO03G05790.1-protein ID=NO03G05790.1-protein|Name=NO03G05790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MGQKIFWIANVVVVVGLLCMTGFGLVSLNSRTFSNSFPINPNISSVPEDY
GHHLHFIVHTVGDYDPNRDCGGCAVLWELYFSLVAHGFSAANNSKSMVPS
NTTVVVIYPEVIRGALEIGDIHVRWILAAVGINVAENITDSWNRDDLVFN
YATSTGNNIPVSNVLQVVDTPTDGDETDISDEDFNNRDRSGIAWMMRKGP
KYHNEIEFIHDIPGYETTKFERGAVSSLRKFEYFVSYDPYTYWSWFAAMQ
GTVSIVYPLANVSKAQWALGTFVGSYLQDQNLTEIPGVAYGWEESEIEYA
RRTMHKLRSFLVNLRKWGAEVTVPRFTRDCFRFKQGERKFFESALILEDV
YSHL* back to topmRNA from alignment at chr3:1659810..1663968+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05790.1 ID=NO03G05790.1|Name=NO03G05790.1|organism=Nannochloropsis oceanica|type=mRNA|length=4159bp|location=Sequence derived from alignment at chr3:1659810..1663968+ (Nannochloropsis oceanica)
CGATGCCTTATAGCCGCCGACATGCCGGTTTTGAATTCCTTCCCACAATA
GTTTCATGGCCACGAGTTCCCTCTCTTGCCTCAGGGATCTCTTTCCCTTC
CCAAGCGCACACGTGTTTCACCCATGTGTCCATGCCACTGTATTGCCCCG
CCCTTATGCTGCTTGCTTTGACTAGCCAAGCAAGTGCTTCGACCCAGCAG
TCCTTCTCTCATCATCACCCAACGGCTCTCGCTTTCTCCCTTCTTCCGGC
CTGCACATCATAACCTCTATCTGCCCTCCCGACGACCATTGCCAACTCCG
AGCATGGATATAAATGCAGCAAATGCTAGGTACGTGGTACCATCTGGTGG
GAGCATGAGGAGGCCGTGCTCGAGCCCCTCTTTTCTAGACAATAATTGCC
CCCCGTCGTCCACATTATCGCCCCTCACATACCGCGGCTGTCCAAGGGTC
CCACCCTGTTGCCCTACATCAAGATGCATGTAATGTGCTTTGCCCTCCTT
TTGCCAGTGAGGTCATGGCCCTGCCATCATCATCCCTGGATTTCCTACCA
CCCGTGCTCATGCCCTTCTACACCACTCCCTCGTCTCTCGAGGAATGGGT
GCGCCGTAGTCCTACCACCAACACCTGGGTCCGTTGGCCCCATGTCATGC
CATGTCATGGCCCTGGTTGTGTGCATCGGGCAGCCTCCTGCTGCATGGAA
GGCATGGCCTAACCTTCCCAGCCCTGCTGTTGCTTCCTTTTTTGCGTGCA
TTACAGCCGCACCCCGGGGAGCCCTGGACCTACAAGCACGCACCTTACCA
CACGACTAGGGACCTTTTGGGAATTTTCAGGGCGTCCAGGTGCGACAGGA
TGCACGTCTGCGAGAGCATAATTGCTGATTGTCCCCGTCCCTCTTTGTTT
ACCCCCCCTTCTTACCCCGTGCTCCTACTTCTCTTATCCTCTGAGGGGCT
GGGATGCATGATGAGCCATTCTTTCCGACCCTTTAGGTCACAGTCGAGAA
TGCTGGGGAGCTGGTCTTGGTGTGAGATGCCATCTTGTGCGTGTCCTCGT
GGCTCATGCTCCTTCCTCCCCTGTCCACCGTGCTTTCCTCCCTCTTACTC
GAGCTGCGTCACGACCTTCCGCCACTCCGTGTGTGTATGATGTTGCTATT
ACCTGTACTACCTGTACTCCTTGGATTTCTATTACCATGACAGGAAAGCC
AATTACGACAGTACGTCCTTCCCCCGTCACTCATCCTCCCCACCTCCCTC
CTTATCCCATCCTTTTTGCTCCAGCGCTGTCATGCCGCAAATTTTCCGCT
GCACTGACACCAACATCCACGACGAATGCAAGATTTTCTCTGTCAACAAG
CCTCAAAAAGACCGCCACCGCCAAAAGTCTTACTCGAACGAAGTGAACCT
GACGGTAGACGGCAGGGTCGTTGTCTTCAAATGCGACGACAACAGGAATT
TTCCCTGCGCATGCGTCATGGTGTTACTGTGTCAGGTCGTGGATTATTCC
GGAAGTTCTATACACGTAGTGGATGACATTAGGTTTGTGCCGGCCCTGGT
GCGGAGAGCCAATAAACGAGTGACTACGTAATATAGGCATTTATCCGAAT
TGTGTTTTGGACGTGTCCGGGCTATTTTTTAATCGATCTGCTTACGAACT
TTTTTCGAACCTTTCCGTCCTTTCTCACCCTCACTCGATTCAAATTATCC
ATCCGCATGGCTTTAAAAACCATATACAATGTAGAGTGCAGGAGGTTGGA
AAAAAGCCGGTTCTTCTTGAAGGGAAGCATTGCGTTTCCCAACGACTTGG
TCCAATCCATGTCAGAAGGTGGCAAGCACCGCAACAAAATGTCCGCATAC
GGCGTAATGGCCTGTCTCGGAAAGACTACCTTAATCGACGAATACAATAC
GGCATACAGCCTATCTGTATCGCCGCCTTTGGCTTCAAAGATGGACTCCA
TTTTCGCCCGAGCCGCTTAGGGGAAGCTTTTTGGCGCCATCCTATTCGTC
GGATTCAAGAAGAAGCAAAGAATTAGGCCAAATGTCATTGTAAATCGATA
ATAAACAACATACACGGATGAAGGGGATCGTCCACACTCAGATCTGGCCA
CCATTTGTAAGATTCACAAGCTGCAGCAACCCACTCATATGACAGAACTA
CTATTGGTCAAGCCAGTGTGTTGTGAGACTGACCGTAATAAATATTGTGT
TTTTAAAGTTGGCATTATGGGCCTGACAATCAGCATCATTTTCCTGGGGG
ATGTTTGGCTGCTTCGTTGAAGTAACCTCAGCCATGGGCCTCCAGTGCTA
TCATATAGGCTGTTTAAAACCTTGTTCTTCATAAAGTATTTGCATGAGAT
TTGTGCTTTCATGTAATACATTGTGTAGATGAGCCATCGGCATGATGAAT
GACGACACAAATCCCATTCTACGGCCGAAATGTCAAGATACACACTCCCT
ACCAACTCGGGCCTAATTTTGGCCGTGTCGCGCACTCGCAGCAACAATTG
AATCTTATCCGTTGCTTGGCTGTCGTGGGTTTCAAGCCCCTCGTCGATCA
CGGCATACCGGCAGGTTGGTGGTAAAGTCTCTGCGATCCAAAGGATGTTC
TCCTCCACACCACCGCGTTATCGCTAGGAGCGCTGGGAGTGGGGTACATG
TACTATCTGAACTATTTTTTAAAAAGAGCGAACGATATTCCAAACTTCAA
GATCGAGCTCTAGCACTACCCATCCAAGCTCACCTACACCGCTTGCTCCA
TTAAATCAGCACCCCTGCATTCATCCCCCCCCAACCCTTCTCCAAGAAAG
ATTTTTCAACAGGCGACCAAGTGATTTTCAAGCGTTCGAACCATATGGGT
CAAAAAATATTTTGGATCGCCAACGTCGTGGTTGTAGTAGGCCTCCTATG
CATGACAGGTGCGCCCTGAAATGCACGAGATTCTCAAAGATCTTGTCAGC
TCACCACCCCATCCATATGCTTTAACAGGATTCGGATTGGTATCGCTCAA
TAGTCGTACATTTTCCAATTCCTTCCCAATAAATCCTAATATTTCTTCCG
TTCCTGAGGATTATGGGCACCATCTCCATTTCATTGTACATACTGTAGGC
GATTACGATCCAAACCGCGATTGTGGTGGATGCGCCGTTCTCTGGGAGTT
GTATTTCTCGCTAGTGGCACACGGGTTCTCAGCTGCGAATAATTCAAAAT
CGATGGTTCCATCCAACACCACCGTCGTTGTGATATATCCGGAAGTAATT
AGAGGCGCGTTAGAGATCGGTGATATTCATGTGCGCTGGATTCTGGCTGC
TGTTGGCATTAACGTCGCAGAGAATATCACGGACTCCTGGAATCGCGACG
ATTTGGTATTCAACTATGCTACAAGCACTGGAAATAACATTCCTGTTTCC
AACGTGCTACAAGTGGTCGACACTCCAACCGACGGGGACGAAACTGACAT
CTCGGATGAGGATTTTAATAACAGGGATCGGTCAGGAATAGCGTGGATGA
TGAGAAAAGGGCCCAAGTACCACAATGAAATTGAGTTCATACACGATATA
CCCGGCTATGAGACGACTAAGTTCGAGAGAGGTGCTGTTTCGAGTCTACG
TAAGTTCGAATACTTCGTCTCATATGATCCATATACATACTGGTCTTGGT
TTGCTGCCATGCAGGGTACAGTGTCGATTGTGTATCCCCTTGCCAATGTA
TCAAAAGCGCAATGGGCGCTTGGTACTTTTGTAGGATCATACCTACAGGA
CCAAAATCTCACTGAAATCCCGGGCGTTGCCTATGGATGGGAGGAAAGCG
AGATCGAGTATGCTCGGCGGACGATGCATAAGCTCAGGTCCTTCTTAGTG
AACCTTCGCAAATGGGGTGCTGAAGTCACCGTACCAAGATTCACAAGGGA
TTGTTTCCGTTTCAAACAGGGAGAGAGGAAATTCTTTGAAAGCGCATTGA
TTCTCGAAGATGTATATTCCCACTTATAGCTCTACGTCGCTTTCTCGAGG
TTTGATAACTCAAAGAGCATCACTACTACGGTCTCACGCCTTCCTATCGA
CGGCCTGTAGGTATTAGCGAGACTATAGCCACTTTCCAGTGGGTGCTCTG
ATTGGCACTGAGAACTTGATAGAAAACGTGTGCTAATAAATATGGGCAGT
GGTCTGAGG back to topCoding sequence (CDS) from alignment at chr3:1659810..1663968+ >NO03G05790.1 ID=NO03G05790.1|Name=NO03G05790.1|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr3:1659810..1663968+ (Nannochloropsis oceanica)
ATGGGTCAAAAAATATTTTGGATCGCCAACGTCGTGGTTGTAGTAGGCCT
CCTATGCATGACAGGATTCGGATTGGTATCGCTCAATAGTCGTACATTTT
CCAATTCCTTCCCAATAAATCCTAATATTTCTTCCGTTCCTGAGGATTAT
GGGCACCATCTCCATTTCATTGTACATACTGTAGGCGATTACGATCCAAA
CCGCGATTGTGGTGGATGCGCCGTTCTCTGGGAGTTGTATTTCTCGCTAG
TGGCACACGGGTTCTCAGCTGCGAATAATTCAAAATCGATGGTTCCATCC
AACACCACCGTCGTTGTGATATATCCGGAAGTAATTAGAGGCGCGTTAGA
GATCGGTGATATTCATGTGCGCTGGATTCTGGCTGCTGTTGGCATTAACG
TCGCAGAGAATATCACGGACTCCTGGAATCGCGACGATTTGGTATTCAAC
TATGCTACAAGCACTGGAAATAACATTCCTGTTTCCAACGTGCTACAAGT
GGTCGACACTCCAACCGACGGGGACGAAACTGACATCTCGGATGAGGATT
TTAATAACAGGGATCGGTCAGGAATAGCGTGGATGATGAGAAAAGGGCCC
AAGTACCACAATGAAATTGAGTTCATACACGATATACCCGGCTATGAGAC
GACTAAGTTCGAGAGAGGTGCTGTTTCGAGTCTACGTAAGTTCGAATACT
TCGTCTCATATGATCCATATACATACTGGTCTTGGTTTGCTGCCATGCAG
GGTACAGTGTCGATTGTGTATCCCCTTGCCAATGTATCAAAAGCGCAATG
GGCGCTTGGTACTTTTGTAGGATCATACCTACAGGACCAAAATCTCACTG
AAATCCCGGGCGTTGCCTATGGATGGGAGGAAAGCGAGATCGAGTATGCT
CGGCGGACGATGCATAAGCTCAGGTCCTTCTTAGTGAACCTTCGCAAATG
GGGTGCTGAAGTCACCGTACCAAGATTCACAAGGGATTGTTTCCGTTTCA
AACAGGGAGAGAGGAAATTCTTTGAAAGCGCATTGATTCTCGAAGATGTA
TATTCCCACTTATAG back to top
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