NO03G05720.1, NO03G05720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05720.1
Unique NameNO03G05720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr3:1643504..1644223 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1643504..1644223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05720.1 vs.
Match: EWM30049.1 (hypothetical protein Naga_100225g9 [Nannochloropsis gaditana])

HSP 1 Score: 113.6 bits (283), Expect = 5.900e-22
Identity = 81/175 (46.29%), Postives = 108/175 (61.71%), Query Frame = 0 
Query:    1 MFSTGSRRLIS---RLVLTGPTPAPPSTT--VKALSV-VSSR---LHSTAAEVPHPLSVIPTLASRSADAASKQEALTAWRTRGLIVDAGNNPHKLLGLLEKGPLDANNMVILVTRLAQACEGKEEVKAAVQADARFAQLVARVVGGVEGALEEKLSELQVLSLREGLRVLGVGG 167
            M S  SRR +    R +L       P+T+  +KA +   SSR   L +TA   P P  V  +L    A   +K++AL AWRTR +I +  ++P KLL LLE   +DA N+VILV+RLAQACEGK E   AVQ+D RFAQLV +V+GG  G + + +SELQ+ S+R  LR+LGV G
Sbjct:    1 MLSVISRRCLQTQKRFLLRSSASVHPTTSFSLKACATWPSSRRRPLSTTAEAPPPPFPVASSLRLHDA-TTTKEDALVAWRTRRVIAEVRHDPQKLLMLLEMEGMDAYNVVILVSRLAQACEGKMEATTAVQSDPRFAQLVEQVLGGKGGRVVKDMSELQMDSVRASLRLLGVEG 174
The following BLAST results are available for this feature:
BLAST of NO03G05720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30049.15.900e-2246.29hypothetical protein Naga_100225g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05720NO03G05720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05720.1NO03G05720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05720.1.cds1NO03G05720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05720.1.cds2NO03G05720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05720.1 ID=NO03G05720.1|Name=NO03G05720.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
ATGTTCTCCACCGGGAGTCGCCGCTTAATCAGCCGCCTTGTCCTCACGGG
TCCTACCCCCGCTCCTCCTTCCACCACTGTCAAGGCTCTTTCTGTCGTCT
CCTCCCGTCTTCATTCGACCGCCGCCGAAGTTCCCCATCCTCTTTCCGTA
ATCCCAACTCTTGCTTCGCGATCGGCCGATGCTGCGAGCAAGCAAGAGGC
TTTGACGGCATGGCGCACGCGCGGCCTGATTGTCGACGCTGGGAATAACC
CGCACAAGCTCTTGGGGCTTCTTGAAAAGGGCCCTCTGGACGCCAACAAC
ATGGTAATTCTCGTCACGCGCTTGGCCCAGGCCTGCGAGGGGAAGGAGGA
GGTCAAGGCCGCTGTTCAGGCGGACGCACGCTTTGCCCAGCTGGTGGCGC
GGGTGGTTGGGGGGGTGGAGGGAGCCTTGGAAGAGAAATTAAGCGAGTTA
CAGGTGTTGAGTCTTCGGGAGGGACTTCGTGTCTTGGGCGTCGGGGGCGT
TTGA
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protein sequence of NO03G05720.1

>NO03G05720.1-protein ID=NO03G05720.1-protein|Name=NO03G05720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MFSTGSRRLISRLVLTGPTPAPPSTTVKALSVVSSRLHSTAAEVPHPLSV
IPTLASRSADAASKQEALTAWRTRGLIVDAGNNPHKLLGLLEKGPLDANN
MVILVTRLAQACEGKEEVKAAVQADARFAQLVARVVGGVEGALEEKLSEL
QVLSLREGLRVLGVGGV*
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mRNA from alignment at chr3:1643504..1644223+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05720.1 ID=NO03G05720.1|Name=NO03G05720.1|organism=Nannochloropsis oceanica|type=mRNA|length=720bp|location=Sequence derived from alignment at chr3:1643504..1644223+ (Nannochloropsis oceanica)
ATGTTCTCCACCGGGAGTCGCCGCTTAATCAGCCGCCTTGTCCTCACGGG
TCCTACCCCCGCTCCTCCTTCCACCACTGTCAAGGGTAAGTACCAGTTTG
ACGAGGCAGGAGTGAAATAGTGAGGCTTGATGTGTGTATTCGGCGCGCGC
GATAGGCGTAAGGGAGAGACTCTTTGATGGTGAGGAGGAGGAGGAGGAGG
AGGAGGTGAGAGACGGGGAGGGGAGATTCTAAGGAGATTCGGGAATACAA
GCCGCATACACTCATGCGTCTCCCACGCTACCCGTCCTCTTCAACCCACA
GCTCTTTCTGTCGTCTCCTCCCGTCTTCATTCGACCGCCGCCGAAGTTCC
CCATCCTCTTTCCGTAATCCCAACTCTTGCTTCGCGATCGGCCGATGCTG
CGAGCAAGCAAGAGGCTTTGACGGCATGGCGCACGCGCGGCCTGATTGTC
GACGCTGGGAATAACCCGCACAAGCTCTTGGGGCTTCTTGAAAAGGGCCC
TCTGGACGCCAACAACATGGTAATTCTCGTCACGCGCTTGGCCCAGGCCT
GCGAGGGGAAGGAGGAGGTCAAGGCCGCTGTTCAGGCGGACGCACGCTTT
GCCCAGCTGGTGGCGCGGGTGGTTGGGGGGGTGGAGGGAGCCTTGGAAGA
GAAATTAAGCGAGTTACAGGTGTTGAGTCTTCGGGAGGGACTTCGTGTCT
TGGGCGTCGGGGGCGTTTGA
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Coding sequence (CDS) from alignment at chr3:1643504..1644223+

>NO03G05720.1 ID=NO03G05720.1|Name=NO03G05720.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr3:1643504..1644223+ (Nannochloropsis oceanica)
ATGTTCTCCACCGGGAGTCGCCGCTTAATCAGCCGCCTTGTCCTCACGGG
TCCTACCCCCGCTCCTCCTTCCACCACTGTCAAGGCTCTTTCTGTCGTCT
CCTCCCGTCTTCATTCGACCGCCGCCGAAGTTCCCCATCCTCTTTCCGTA
ATCCCAACTCTTGCTTCGCGATCGGCCGATGCTGCGAGCAAGCAAGAGGC
TTTGACGGCATGGCGCACGCGCGGCCTGATTGTCGACGCTGGGAATAACC
CGCACAAGCTCTTGGGGCTTCTTGAAAAGGGCCCTCTGGACGCCAACAAC
ATGGTAATTCTCGTCACGCGCTTGGCCCAGGCCTGCGAGGGGAAGGAGGA
GGTCAAGGCCGCTGTTCAGGCGGACGCACGCTTTGCCCAGCTGGTGGCGC
GGGTGGTTGGGGGGGTGGAGGGAGCCTTGGAAGAGAAATTAAGCGAGTTA
CAGGTGTTGAGTCTTCGGGAGGGACTTCGTGTCTTGGGCGTCGGGGGCGT
TTGA
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Synonyms
Publications