NO03G05600.3, NO03G05600.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G05600.3
Unique Name	NO03G05600.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1335
Alignment location	chr3:1605815..1608134 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1605815..1608134 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G05600.3 vs.
Match: EWM30033.1 (lipase family protein [Nannochloropsis gaditana])

HSP 1 Score: 399.8 bits (1026), Expect = 9.500e-108
Identity = 181/279 (64.87%), Postives = 220/279 (78.85%), Query Frame = 0

Query:   31 LLLFLLLPLQPSARLAKPSSRLPDPYDENMVQVLLDYSAAAYYCRTSACETWLCSACLRHPHTQVTRVYDSEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILTPWPEDGCVHCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSLGAALAVLCMLDLLALSYPVTQTTTFGQPRVGNKEFSSFF-NQTIIPSIPFFRLVHHRDPVPHLPPQSLGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQYYIDANINDHLSYLGM 309
            +L    +  Q +ARLA    +    Y+E  V+V+LDY+AAAYYCRTSACE W CSAC RHP T+V RVYD+ HNGNGFVGWDP +GV++V+FAGTDTTS+ NWIDD+D + TPWP +GC  C+VHAGFL TY AL+ QL P ++AL+  HPQAP+W+TGHSLGAALAVLCM+DLL+LSYPV     FGQPRVGN+ FSSF   Q+   S+ F+RLVHHRDPVPHLPP S GFHHSPFEVFY+++E+ Y ICD TGEDKHCS+ Y ID +I DHL+YLG+
Sbjct:   42 VLFLTSITCQAAARLANTKQQNSSFYNETAVRVMLDYAAAAYYCRTSACEAWACSACSRHPRTEVRRVYDNVHNGNGFVGWDPVEGVVVVSFAGTDTTSVANWIDDLDEVKTPWPLEGCQECKVHAGFLTTYSALRPQLQPLVEALVRDHPQAPVWVTGHSLGAALAVLCMVDLLSLSYPVRAVVNFGQPRVGNQHFSSFVAAQSASLSLCFYRLVHHRDPVPHLPPASFGFHHSPFEVFYTKNETYYHICDATGEDKHCSDHYLIDPSIKDHLNYLGV 320

The following BLAST results are available for this feature:

BLAST of NO03G05600.3 vs.

BLAST of NO03G05600.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30033.1	9.500e-108	64.87	lipase family protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G05600	NO03G05600	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05600.3	NO03G05600.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05600.3.cds1	NO03G05600.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05600.3.cds2	NO03G05600.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05600.3.cds3	NO03G05600.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05600.3.cds4	NO03G05600.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05600.3.cds5	NO03G05600.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05600.3.cds6	NO03G05600.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05600.3.cds7	NO03G05600.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1605815..1608134-
coding sequence from alignment at chr3:1605815..1608134-

mRNA sequence

>NO03G05600.3 ID=NO03G05600.3|Name=NO03G05600.3|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA
GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC
CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA
GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT
TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG
ACGTGGTTATGCAGTGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCG
TGTGTACGACAGCGAGCACAATGGGAATGGCTTCGTGGGATGGGACCCTG
ATAAAGGTGTTATTATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTG
AAAAACTGGATCGACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGA
TGGGTGTGTGCACTGCAGGGTCCACGCAGGATTCCTTGCCACCTATGGCG
CCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCCTGCTGGAGCAGCAT
CCTCAGGCGCCGATATGGATCACTGGACACTCTCTCGGAGCTGCCCTGGC
CGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCAGA
CGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGGAGTTCTCCTCCTTC
TTCAACCAGACCATCATCCCCTCCATCCCCTTCTTCCGCCTTGTCCACCA
CCGCGACCCCGTGCCCCATCTACCACCGCAATCCCTGGGCTTCCACCACT
CGCCTTTCGAAGTGTTCTACTCCGAAGACGAATCATCCTACGTCATATGT
GACCCCACGGGCGAGGATAAGCATTGCTCTAACCAGTACTACATCGACGC
CAACATTAACGATCATCTCAGTTATCTTGGTATGTCCTGCCCTCCCTCCT
CCCCTCCTTCCCCGTCCTCTCCGTTCTTTTGTGTGATGACAGTATCAACT
GCACATAATGCTCTATCTTCCCCCCCCCCTTTCCTTCTTCCCTCCCTCCT
TCCCTCCCTTCCTCTAGGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCC
GCATGCAAGAAATCTCCTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGG
CGGGTTGCGGCGTTATCATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATG
GAGGAAGAAGAGGAGGGGGGAAGGGTGAAAGCAATAGAATGCATGTTTCA
TATGATGACAAAAAAGATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAA
AGGAATGAAGAAGTAACCGGTTTGTTGTAATGCGT

protein sequence of NO03G05600.3

>NO03G05600.3-protein ID=NO03G05600.3-protein|Name=NO03G05600.3|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MLVVHLSPLSRCKRRKDDPSLPCFPWSLLLLLLFLLLPLQPSARLAKPSS
RLPDPYDENMVQVLLDYSAAAYYCRTSACETWLCSACLRHPHTQVTRVYD
SEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILTPWPEDGCV
HCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSLGAALAVLC
MLDLLALSYPVTQTTTFGQPRVGNKEFSSFFNQTIIPSIPFFRLVHHRDP
VPHLPPQSLGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQYYIDANIN
DHLSYLGMSCPPSSPPSPSSPFFCVMTVSTAHNALSSPPPFLLPSLLPSL
PLGVLFGAEELEGRMQEISSLRGVEVNEGGRVAALSSL*

mRNA from alignment at chr3:1605815..1608134-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G05600.3 ID=NO03G05600.3|Name=NO03G05600.3|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica)
CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA
GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC
CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA
GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT
TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG
ACGTGGTTATGCAGGTGCGAAAGGCAAATGGGTGGGTGGGGCGGACAGGG
AAGGCACGTATACGTTGCTCTGCTGCCTTGTTTCCCAGACGTGCGATGGC
CTATACCATACCCTAAATGCGCTCTCTTAACTCTTTCAATCTCCACTCAG
TGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCGTGTGTACGACAGCG
AGCACAATGGGAATGGCTTCGTGGGATGGGACCCTGATAAAGGTGAGGGA
AACGGAAGAGAGGGAGGACATGGCAGAAAGTGTATGGTAATATGGAGAGT
ACGATGTGATGAAATTAGATAGATTGAATCACTTTACATTGAGGCCTTGC
ATGTAAGCTCATCTGCGTATATGCGCCCTCCCTTTCCTATCAGGTGTTAT
TATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTGAAAAACTGGATCG
ACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGATGGGTGTGTGGTG
AGTGCGGAGGAAGAGAGGGAAGCAACGAGTGAAGGGAGGAAGAGTGGGAG
GCAGCGAGTAAAGAGAGGGAAAGAGGGAGGGCTTTCTGTTCTTGTTGGTC
ACCAGGGGGTGGCTTGTGGCCAAGGCATCGGACATAAGGCATCCCTACCT
ATCAGCCTCCCTCCCTTTCCCAGCACTGCAGGGTCCACGCAGGATTCCTT
GCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCCT
GCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGTAAGGACTAGG
GAGGCAGGGAGGGAGGGAGGGAGGGAGCGATTGCCAAACGCGGTACGACC
GATCATATTTCTCCATCCCTCAACGATAGATAAGGAATTGGGGAGGGAGT
GGGCCGGCATGATAGCCTTCACCCATCCAGATTTCTTAAGCGCCTGCTCC
TGCCCCTCCTTCCCTCCCTCCCTCCTTCCCCCCCTCACTCCTTCCCTCCC
TCCTTCCCTCCCTCCCTATTTTCCAAGGACACTCTCTCGGAGCTGCCCTG
GCCGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCA
GACGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGGAGGTGAGGGAGG
GAGGGAGGGGGGATGGAGAGGGTCCCCTATCTGTACGACGCGCATAGCAT
ACCATTGATGTCTGTTTTTTTCCCTCTTTCGGTCCTCTTTCCCTTCCCCT
TTCAGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCCCCTTC
TTCCGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCGCAATG
TACGTCCGAGGAAGGAGGGAGGGAGGGAGGAAGACATGGAGGCTCCAGTG
CCCTAACACGTGCCATCAGACTGTCGAATAACGTGTACCCATATATACAC
CTTCATTCTCGCTTTCTCTTAACCCTCCCTCCGTCCCTTCCACCCCTTCT
TCCCTCTTTCCGCCCAGCCCTGGGCTTCCACCACTCGCCTTTCGAAGTGT
TCTACTCCGAAGACGAATCATCCTACGTCATATGTGACCCCACGGGCGAG
GATAAGCATTGCTCTAACCAGTACTACATCGACGCCAACATTAACGATCA
TCTCAGTTATCTTGGTATGTCCTGCCCTCCCTCCTCCCCTCCTTCCCCGT
CCTCTCCGTTCTTTTGTGTGATGACAGTATCAACTGCACATAATGCTCTA
TCTTCCCCCCCCCCTTTCCTTCTTCCCTCCCTCCTTCCCTCCCTTCCTCT
AGGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCT
CCTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTA
TCATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAG
GGGGGAAGGGTGAAAGCAATAGAATGCATGTTTCATATGATGACAAAAAA
GATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTA
ACCGGTTTGTTGTAATGCGT

Coding sequence (CDS) from alignment at chr3:1605815..1608134-

>NO03G05600.3 ID=NO03G05600.3|Name=NO03G05600.3|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica)
ATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGAGGAGAAAGGA
TGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTCCTCCTTCTCT
TCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAAGCCCTCCAGT
CGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGTTACTCGACTA
TTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAGACGTGGTTAT
GCAGTGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCGTGTGTACGAC
AGCGAGCACAATGGGAATGGCTTCGTGGGATGGGACCCTGATAAAGGTGT
TATTATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTGAAAAACTGGA
TCGACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGATGGGTGTGTG
CACTGCAGGGTCCACGCAGGATTCCTTGCCACCTATGGCGCCCTCCAGTC
CCAGCTCTTGCCGGCCATCCAGGCCCTGCTGGAGCAGCATCCTCAGGCGC
CGATATGGATCACTGGACACTCTCTCGGAGCTGCCCTGGCCGTGTTGTGC
ATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCAGACGACTACCTT
CGGCCAGCCGCGCGTGGGGAACAAGGAGTTCTCCTCCTTCTTCAACCAGA
CCATCATCCCCTCCATCCCCTTCTTCCGCCTTGTCCACCACCGCGACCCC
GTGCCCCATCTACCACCGCAATCCCTGGGCTTCCACCACTCGCCTTTCGA
AGTGTTCTACTCCGAAGACGAATCATCCTACGTCATATGTGACCCCACGG
GCGAGGATAAGCATTGCTCTAACCAGTACTACATCGACGCCAACATTAAC
GATCATCTCAGTTATCTTGGTATGTCCTGCCCTCCCTCCTCCCCTCCTTC
CCCGTCCTCTCCGTTCTTTTGTGTGATGACAGTATCAACTGCACATAATG
CTCTATCTTCCCCCCCCCCTTTCCTTCTTCCCTCCCTCCTTCCCTCCCTT
CCTCTAGGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGA
AATCTCCTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGG
CGTTATCATCCTTGTAA

Synonyms

Publications