NO03G05600.2, NO03G05600.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05600.2
Unique NameNO03G05600.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1169
Alignment locationchr3:1605815..1608134 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1605815..1608134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G05600.2 vs.
Match: EWM30033.1 (lipase family protein [Nannochloropsis gaditana])

HSP 1 Score: 357.1 bits (915), Expect = 4.600e-95
Identity = 162/246 (65.85%), Postives = 197/246 (80.08%), Query Frame = 0 
Query:    2 QVTRVYDSEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILTPWPEDGCVHCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSLGAALAVLCMLDLLALSYPVTQTTTFGQPRVGNKEFSSFF-NQTIIPSIPFFRLVHHRDPVPHLPPQSLGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQYYIDANINDHLSYLGVLFGAEELEGRMQEISSLRGVEVNEGGRVAA 247
            +V RVYD+ HNGNGFVGWDP +GV++V+FAGTDTTS+ NWIDD+D + TPWP +GC  C+VHAGFL TY AL+ QL P ++AL+  HPQAP+W+TGHSLGAALAVLCM+DLL+LSYPV     FGQPRVGN+ FSSF   Q+   S+ F+RLVHHRDPVPHLPP S GFHHSPFEVFY+++E+ Y ICD TGEDKHCS+ Y ID +I DHL+YLGVLFG EE+EGR+QE+    G E+     V+A
Sbjct:  105 EVRRVYDNVHNGNGFVGWDPVEGVVVVSFAGTDTTSVANWIDDLDEVKTPWPLEGCQECKVHAGFLTTYSALRPQLQPLVEALVRDHPQAPVWVTGHSLGAALAVLCMVDLLSLSYPVRAVVNFGQPRVGNQHFSSFVAAQSASLSLCFYRLVHHRDPVPHLPPASFGFHHSPFEVFYTKNETYYHICDATGEDKHCSDHYLIDPSIKDHLNYLGVLFGGEEVEGRLQELMHSTGWEMEASVLVSA 350
The following BLAST results are available for this feature:
BLAST of NO03G05600.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30033.14.600e-9565.85lipase family protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05600NO03G05600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05600.2NO03G05600.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05600.2.cds1NO03G05600.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds2NO03G05600.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds3NO03G05600.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds4NO03G05600.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds5NO03G05600.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds6NO03G05600.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds7NO03G05600.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds8NO03G05600.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05600.2 ID=NO03G05600.2|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp
CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA
GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC
CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA
GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT
TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG
ACGTGGTTATGCAGGTGACGCGTGTGTACGACAGCGAGCACAATGGGAAT
GGCTTCGTGGGATGGGACCCTGATAAAGGTGTTATTATAGTTGCGTTTGC
GGGCACGGACACGACGAGCCTGAAAAACTGGATCGACGACATTGATAGCA
TCCTCACGCCCTGGCCGGAGGATGGGTGTGTGCACTGCAGGGTCCACGCA
GGATTCCTTGCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCAT
CCAGGCCCTGCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGAC
ACTCTCTCGGAGCTGCCCTGGCCGTGTTGTGCATGCTGGATCTGCTCGCT
CTCTCATATCCCGTCACGCAGACGACTACCTTCGGCCAGCCGCGCGTGGG
GAACAAGGAGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCC
CCTTCTTCCGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCG
CAATCCCTGGGCTTCCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGA
CGAATCATCCTACGTCATATGTGACCCCACGGGCGAGGATAAGCATTGCT
CTAACCAGTACTACATCGACGCCAACATTAACGATCATCTCAGTTATCTT
GGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCTC
CTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTAT
CATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAGG
GGGGAAGGGTGAAAGCAATAGAATGCATGTTTCATATGATGACAAAAAAG
ATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTAA
CCGGTTTGTTGTAATGCGT
back to top

protein sequence of NO03G05600.2

>NO03G05600.2-protein ID=NO03G05600.2-protein|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MQVTRVYDSEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILT
PWPEDGCVHCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSL
GAALAVLCMLDLLALSYPVTQTTTFGQPRVGNKEFSSFFNQTIIPSIPFF
RLVHHRDPVPHLPPQSLGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQ
YYIDANINDHLSYLGVLFGAEELEGRMQEISSLRGVEVNEGGRVAALSSL
*
back to top

mRNA from alignment at chr3:1605815..1608134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05600.2 ID=NO03G05600.2|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica)
CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA
GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC
CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA
GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT
TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG
ACGTGGTTATGCAGGTGCGAAAGGCAAATGGGTGGGTGGGGCGGACAGGG
AAGGCACGTATACGTTGCTCTGCTGCCTTGTTTCCCAGACGTGCGATGGC
CTATACCATACCCTAAATGCGCTCTCTTAACTCTTTCAATCTCCACTCAG
TGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCGTGTGTACGACAGCG
AGCACAATGGGAATGGCTTCGTGGGATGGGACCCTGATAAAGGTGAGGGA
AACGGAAGAGAGGGAGGACATGGCAGAAAGTGTATGGTAATATGGAGAGT
ACGATGTGATGAAATTAGATAGATTGAATCACTTTACATTGAGGCCTTGC
ATGTAAGCTCATCTGCGTATATGCGCCCTCCCTTTCCTATCAGGTGTTAT
TATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTGAAAAACTGGATCG
ACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGATGGGTGTGTGGTG
AGTGCGGAGGAAGAGAGGGAAGCAACGAGTGAAGGGAGGAAGAGTGGGAG
GCAGCGAGTAAAGAGAGGGAAAGAGGGAGGGCTTTCTGTTCTTGTTGGTC
ACCAGGGGGTGGCTTGTGGCCAAGGCATCGGACATAAGGCATCCCTACCT
ATCAGCCTCCCTCCCTTTCCCAGCACTGCAGGGTCCACGCAGGATTCCTT
GCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCCT
GCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGTAAGGACTAGG
GAGGCAGGGAGGGAGGGAGGGAGGGAGCGATTGCCAAACGCGGTACGACC
GATCATATTTCTCCATCCCTCAACGATAGATAAGGAATTGGGGAGGGAGT
GGGCCGGCATGATAGCCTTCACCCATCCAGATTTCTTAAGCGCCTGCTCC
TGCCCCTCCTTCCCTCCCTCCCTCCTTCCCCCCCTCACTCCTTCCCTCCC
TCCTTCCCTCCCTCCCTATTTTCCAAGGACACTCTCTCGGAGCTGCCCTG
GCCGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCA
GACGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGGAGGTGAGGGAGG
GAGGGAGGGGGGATGGAGAGGGTCCCCTATCTGTACGACGCGCATAGCAT
ACCATTGATGTCTGTTTTTTTCCCTCTTTCGGTCCTCTTTCCCTTCCCCT
TTCAGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCCCCTTC
TTCCGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCGCAATG
TACGTCCGAGGAAGGAGGGAGGGAGGGAGGAAGACATGGAGGCTCCAGTG
CCCTAACACGTGCCATCAGACTGTCGAATAACGTGTACCCATATATACAC
CTTCATTCTCGCTTTCTCTTAACCCTCCCTCCGTCCCTTCCACCCCTTCT
TCCCTCTTTCCGCCCAGCCCTGGGCTTCCACCACTCGCCTTTCGAAGTGT
TCTACTCCGAAGACGAATCATCCTACGTCATATGTGACCCCACGGGCGAG
GATAAGCATTGCTCTAACCAGTACTACATCGACGCCAACATTAACGATCA
TCTCAGTTATCTTGGTATGTCCTGCCCTCCCTCCTCCCCTCCTTCCCCGT
CCTCTCCGTTCTTTTGTGTGATGACAGTATCAACTGCACATAATGCTCTA
TCTTCCCCCCCCCCTTTCCTTCTTCCCTCCCTCCTTCCCTCCCTTCCTCT
AGGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCT
CCTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTA
TCATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAG
GGGGGAAGGGTGAAAGCAATAGAATGCATGTTTCATATGATGACAAAAAA
GATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTA
ACCGGTTTGTTGTAATGCGT
back to top

Coding sequence (CDS) from alignment at chr3:1605815..1608134-

>NO03G05600.2 ID=NO03G05600.2|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica)
ATGCAGGTGACGCGTGTGTACGACAGCGAGCACAATGGGAATGGCTTCGT
GGGATGGGACCCTGATAAAGGTGTTATTATAGTTGCGTTTGCGGGCACGG
ACACGACGAGCCTGAAAAACTGGATCGACGACATTGATAGCATCCTCACG
CCCTGGCCGGAGGATGGGTGTGTGCACTGCAGGGTCCACGCAGGATTCCT
TGCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCC
TGCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGACACTCTCTC
GGAGCTGCCCTGGCCGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATA
TCCCGTCACGCAGACGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGG
AGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCCCCTTCTTC
CGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCGCAATCCCT
GGGCTTCCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGACGAATCAT
CCTACGTCATATGTGACCCCACGGGCGAGGATAAGCATTGCTCTAACCAG
TACTACATCGACGCCAACATTAACGATCATCTCAGTTATCTTGGTGTGCT
TTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCTCCTCGTTAC
GAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTATCATCCTTG
TAA
back to top
Synonyms
Publications