NO03G05300.1, NO03G05300.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G05300.1
Unique Name	NO03G05300.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2566
Alignment location	chr3:1509312..1511877 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1509312..1511877 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G05300.1 vs.
Match: PDM73251.1 (gck-1 [Pristionchus pacificus])

HSP 1 Score: 278.5 bits (711), Expect = 5.500e-71
Identity = 141/241 (58.51%), Postives = 172/241 (71.37%), Query Frame = 0

Query:  146 RPARKVAIKVINLEAQEDGMEDIQREIDILSHCNCPQLTRYFASYVVEHSLWIVMEYVDGGSLGELLALTPHGRLGEVAIAGAMSQLCQALAYLHGERKIHRDVKAKNVLVSSTGLVKLADFGVTASLTETMGKRQTFAGTPFWMAPEVISQTSYDFKADVWSLGITAMELAKGAPPYAKVHPVRALFLIPKNPPPRLEDEEEGSGEGRWSEGFKEFVAACLRKDPAERLTAGELSLLPFL 387
            R  + VAIK+I+LE  ED +EDIQ+EI +LS C+ P +T+Y+ SY+    LWI+MEY+ GGS    L LT  G+L E  IA  + ++ + L YLHGERKIHRD+KA NVLVS  G VK+ADFGV   LTET+ KR TF G+PFWMAPE+I Q SYDFKAD+WSLGITA+ELAKG PP+A +HP+R LFLIPKNPPP+L   E       WS  FK+FV  CL KDP  R TA EL   PF+
Sbjct:  900 RTGQVVAIKIIDLEQAEDEIEDIQQEIQVLSQCDSPFVTKYYGSYLKGSKLWIIMEYLGGGSA---LDLTKAGKLDENQIAVILREILKGLEYLHGERKIHRDIKAANVLVSEQGDVKVADFGVAGQLTETVKKRITFVGSPFWMAPELIRQASYDFKADIWSLGITAIELAKGEPPHADLHPMRVLFLIPKNPPPQLTGAE-------WSRAFKDFVDLCLNKDPDNRPTAKELLRSPFI 1130

The following BLAST results are available for this feature:

BLAST of NO03G05300.1 vs.

BLAST of NO03G05300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
PDM73251.1	5.500e-71	58.51	gck-1 [Pristionchus pacificus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G05300	NO03G05300	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05300.1	NO03G05300.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05300.1.cds1	NO03G05300.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1509312..1511877+
coding sequence from alignment at chr3:1509312..1511877+

mRNA sequence

>NO03G05300.1 ID=NO03G05300.1|Name=NO03G05300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2566bp
ACAATAGATGAATGGCACCAGCAGTAGCAGGTGCAGCACGCCCTGCTGGC
ATCCACAACTGCCGCGTTCTTGCCCTGCTTCCCCTTCCTCCCTCCTGGTG
TCTCCCATGCGGCCCTCCTCCCAAATCTCCCCACACGATCAGTTTCGCTT
TGTCGAGGAGATCGGAACAGGAAGCTTTGGGGCGGTGTACCTGGCCATAG
AACGTGCGGAACGACTAACAAGTAGCATATCGAGGCAGCAGTTGTCTTCC
AACCCTCCCACCCTGGCTCTGGCCCGCCAAGACAGCAGCTGCAGCTGCAG
CAGCTCGGCGGTTAATGAAGAGGAAGGCGCCCTCCCAATGCCTATGATTC
TCTCCTCCTTCTCTTCTTCTGCCTCCTTCTCCTCTCCTTCTCTTTCCTTT
TCCTCCTCAAGCAGGCCCGGTACTCCCCGGACCCGACCCCTTCGACCCGC
GCGAAAGGTCGCCATCAAGGTGATTAATCTTGAAGCTCAAGAAGACGGGA
TGGAGGATATTCAACGCGAAATTGATATCCTTTCCCACTGCAATTGTCCG
CAATTAACCCGCTATTTTGCTTCGTACGTCGTCGAGCATTCTCTCTGGAT
CGTTATGGAGTATGTAGATGGAGGATCTCTGGGGGAGCTCCTGGCCCTTA
CCCCCCACGGCCGCTTAGGTGAAGTGGCGATCGCTGGGGCCATGAGCCAG
CTATGCCAGGCTTTGGCCTACCTGCACGGAGAGAGGAAAATCCATCGGGA
CGTGAAAGCAAAAAACGTCCTCGTCTCCTCAACCGGTCTGGTGAAGCTTG
CCGATTTCGGCGTGACTGCCTCGTTGACGGAGACCATGGGAAAGCGACAA
ACCTTTGCCGGGACGCCGTTTTGGATGGCGCCTGAGGTGATTTCTCAGAC
CTCATATGACTTCAAAGCGGACGTCTGGAGTCTGGGGATAACGGCGATGG
AACTGGCGAAGGGGGCTCCGCCCTATGCGAAGGTCCACCCCGTCCGGGCC
TTGTTTTTAATTCCGAAGAACCCGCCGCCACGGTTGGAGGATGAGGAGGA
GGGCTCGGGAGAGGGAAGGTGGTCGGAGGGGTTCAAGGAGTTTGTGGCGG
CGTGTTTGAGGAAGGATCCCGCGGAGAGACTGACGGCGGGGGAGTTGTCG
TTGTTGCCGTTCTTGGATGACGAGGGGAGGGTGGAAGAAGGAAGGGAGCA
GCTGGTGGCGTTGGTGAAGAGGCGAGTGCCTTCCCAGAGGTTGGAGCGGG
AGGAGATGCTGCTGGCGGAGGAGGAACAACAGCAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGTGGGAGGGTAGGGGTGGGGAAGGGGAGAGGGTGGAGGA
GGGCAGGCCGGGGTGGGCGGAGGAGGAGGGGATAGGGAGGGGGGGCATTC
GCCGGGGTCCGACAAGTCGGATGATGGAGTTGACCTTGCACAGACAAGAT
ACAGAGGACCGGAGTAGTAGTCGCAGCAGTAGCAGCAGCAGCGGCAACAT
CAGCAGAATCCGAATGTCCCACAGCGCCTCCTCTTCTCCTCGTGCATCCC
GGCCGGGTCAAGGGCAAGGATGGAGAGGGCAGCAACGGCGGAATCTAAAA
ATTCTATCTTCCGCCCGAGCCGCCCTCGAAAGAGGCTCTGGCTCCTCATC
CACTTCCTCCTCCACCGCCACCGCCACCCCCTCCCTCGCTTTTTCCCCCA
CTGGAGGAAGGCGCCGCCGCTCACACCTTCGGCGGGGATCGAGCGGATGC
CAAAGTCTCAGCAGTAGCATTAGCAGTAATAGTAGTGGCAGCAGCAACAG
CAGCAGTGGCAGTATCAACGACAACGCCGGCGGCACCACCAATAAAACTG
ACAGCTTTTCTTCCCTGTCATCCCTGGACCGCCAAGCAGGGACCCCGCCC
ATGGGCCGCCGTTGGGGATCGAATGGGGGAAAGGAAGGAGGGAAATGTAA
AGGAAGGGGGGGGGAGGGAGAGGAAACGGTGATCGAGGAGGTTTTTTAGC
CCTTTCGAATTTAAATCCATCACTGCCACCGGGAGGAGGGAGGGAGGGGG
GGAGGCCGAGCCGGCACATCCGGTCGCCGTATGCGAGTCCGGTGAGGAGG
CAGGGAAGCACGGCGTCATTGTCGTCGATGGGATCGGAGGGCAGGGAGAG
TAGGAGAGAGAGCCCGTGGGAGGAGCGAAGGAGGGAAAAGAGGGAGGACG
GGGAGGACGGAGAGAGCGGGGAGGAGGAGAGGGAGTATCACAACGAGATA
GGGCCGGGGTCGGAGGAAGAAGGGGAGGAAGAGGAGGAGCTTCAGTGGGA
CTTTACGGTCAAATCAGCCGATGCCTTTTTGCCAGTTGCTGGAGCCATGT
GAGGAAGTGAGAGGGCATCTGTGCGTGCAGGCGTGATGTCCATGTAACGC
ACTGGTTCAGGGAGGCGTGAAGGAGGACTGAAAGGGGAGAAAAAGATAGC
ACAACAGCTATTTAAAATTAAATAACACAACGGCTGTACAAACTTTTGAG
ACATGAAAGAGGACAAGAGACCGAATTAGATGGGGAAGGAAGAAAGAAAC
GCCAAATGTAAGTGCA

protein sequence of NO03G05300.1

>NO03G05300.1-protein ID=NO03G05300.1-protein|Name=NO03G05300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=664bp
MNGTSSSRCSTPCWHPQLPRSCPASPSSLLVSPMRPSSQISPHDQFRFVE
EIGTGSFGAVYLAIERAERLTSSISRQQLSSNPPTLALARQDSSCSCSSS
AVNEEEGALPMPMILSSFSSSASFSSPSLSFSSSSRPGTPRTRPLRPARK
VAIKVINLEAQEDGMEDIQREIDILSHCNCPQLTRYFASYVVEHSLWIVM
EYVDGGSLGELLALTPHGRLGEVAIAGAMSQLCQALAYLHGERKIHRDVK
AKNVLVSSTGLVKLADFGVTASLTETMGKRQTFAGTPFWMAPEVISQTSY
DFKADVWSLGITAMELAKGAPPYAKVHPVRALFLIPKNPPPRLEDEEEGS
GEGRWSEGFKEFVAACLRKDPAERLTAGELSLLPFLDDEGRVEEGREQLV
ALVKRRVPSQRLEREEMLLAEEEQQQEEEEEEEEEWEGRGGEGERVEEGR
PGWAEEEGIGRGGIRRGPTSRMMELTLHRQDTEDRSSSRSSSSSSGNISR
IRMSHSASSSPRASRPGQGQGWRGQQRRNLKILSSARAALERGSGSSSTS
SSTATATPSLAFSPTGGRRRRSHLRRGSSGCQSLSSSISSNSSGSSNSSS
GSINDNAGGTTNKTDSFSSLSSLDRQAGTPPMGRRWGSNGGKEGGKCKGR
GGEGEETVIEEVF*

mRNA from alignment at chr3:1509312..1511877+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G05300.1 ID=NO03G05300.1|Name=NO03G05300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2566bp|location=Sequence derived from alignment at chr3:1509312..1511877+ (Nannochloropsis oceanica)
ACAATAGATGAATGGCACCAGCAGTAGCAGGTGCAGCACGCCCTGCTGGC
ATCCACAACTGCCGCGTTCTTGCCCTGCTTCCCCTTCCTCCCTCCTGGTG
TCTCCCATGCGGCCCTCCTCCCAAATCTCCCCACACGATCAGTTTCGCTT
TGTCGAGGAGATCGGAACAGGAAGCTTTGGGGCGGTGTACCTGGCCATAG
AACGTGCGGAACGACTAACAAGTAGCATATCGAGGCAGCAGTTGTCTTCC
AACCCTCCCACCCTGGCTCTGGCCCGCCAAGACAGCAGCTGCAGCTGCAG
CAGCTCGGCGGTTAATGAAGAGGAAGGCGCCCTCCCAATGCCTATGATTC
TCTCCTCCTTCTCTTCTTCTGCCTCCTTCTCCTCTCCTTCTCTTTCCTTT
TCCTCCTCAAGCAGGCCCGGTACTCCCCGGACCCGACCCCTTCGACCCGC
GCGAAAGGTCGCCATCAAGGTGATTAATCTTGAAGCTCAAGAAGACGGGA
TGGAGGATATTCAACGCGAAATTGATATCCTTTCCCACTGCAATTGTCCG
CAATTAACCCGCTATTTTGCTTCGTACGTCGTCGAGCATTCTCTCTGGAT
CGTTATGGAGTATGTAGATGGAGGATCTCTGGGGGAGCTCCTGGCCCTTA
CCCCCCACGGCCGCTTAGGTGAAGTGGCGATCGCTGGGGCCATGAGCCAG
CTATGCCAGGCTTTGGCCTACCTGCACGGAGAGAGGAAAATCCATCGGGA
CGTGAAAGCAAAAAACGTCCTCGTCTCCTCAACCGGTCTGGTGAAGCTTG
CCGATTTCGGCGTGACTGCCTCGTTGACGGAGACCATGGGAAAGCGACAA
ACCTTTGCCGGGACGCCGTTTTGGATGGCGCCTGAGGTGATTTCTCAGAC
CTCATATGACTTCAAAGCGGACGTCTGGAGTCTGGGGATAACGGCGATGG
AACTGGCGAAGGGGGCTCCGCCCTATGCGAAGGTCCACCCCGTCCGGGCC
TTGTTTTTAATTCCGAAGAACCCGCCGCCACGGTTGGAGGATGAGGAGGA
GGGCTCGGGAGAGGGAAGGTGGTCGGAGGGGTTCAAGGAGTTTGTGGCGG
CGTGTTTGAGGAAGGATCCCGCGGAGAGACTGACGGCGGGGGAGTTGTCG
TTGTTGCCGTTCTTGGATGACGAGGGGAGGGTGGAAGAAGGAAGGGAGCA
GCTGGTGGCGTTGGTGAAGAGGCGAGTGCCTTCCCAGAGGTTGGAGCGGG
AGGAGATGCTGCTGGCGGAGGAGGAACAACAGCAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGTGGGAGGGTAGGGGTGGGGAAGGGGAGAGGGTGGAGGA
GGGCAGGCCGGGGTGGGCGGAGGAGGAGGGGATAGGGAGGGGGGGCATTC
GCCGGGGTCCGACAAGTCGGATGATGGAGTTGACCTTGCACAGACAAGAT
ACAGAGGACCGGAGTAGTAGTCGCAGCAGTAGCAGCAGCAGCGGCAACAT
CAGCAGAATCCGAATGTCCCACAGCGCCTCCTCTTCTCCTCGTGCATCCC
GGCCGGGTCAAGGGCAAGGATGGAGAGGGCAGCAACGGCGGAATCTAAAA
ATTCTATCTTCCGCCCGAGCCGCCCTCGAAAGAGGCTCTGGCTCCTCATC
CACTTCCTCCTCCACCGCCACCGCCACCCCCTCCCTCGCTTTTTCCCCCA
CTGGAGGAAGGCGCCGCCGCTCACACCTTCGGCGGGGATCGAGCGGATGC
CAAAGTCTCAGCAGTAGCATTAGCAGTAATAGTAGTGGCAGCAGCAACAG
CAGCAGTGGCAGTATCAACGACAACGCCGGCGGCACCACCAATAAAACTG
ACAGCTTTTCTTCCCTGTCATCCCTGGACCGCCAAGCAGGGACCCCGCCC
ATGGGCCGCCGTTGGGGATCGAATGGGGGAAAGGAAGGAGGGAAATGTAA
AGGAAGGGGGGGGGAGGGAGAGGAAACGGTGATCGAGGAGGTTTTTTAGC
CCTTTCGAATTTAAATCCATCACTGCCACCGGGAGGAGGGAGGGAGGGGG
GGAGGCCGAGCCGGCACATCCGGTCGCCGTATGCGAGTCCGGTGAGGAGG
CAGGGAAGCACGGCGTCATTGTCGTCGATGGGATCGGAGGGCAGGGAGAG
TAGGAGAGAGAGCCCGTGGGAGGAGCGAAGGAGGGAAAAGAGGGAGGACG
GGGAGGACGGAGAGAGCGGGGAGGAGGAGAGGGAGTATCACAACGAGATA
GGGCCGGGGTCGGAGGAAGAAGGGGAGGAAGAGGAGGAGCTTCAGTGGGA
CTTTACGGTCAAATCAGCCGATGCCTTTTTGCCAGTTGCTGGAGCCATGT
GAGGAAGTGAGAGGGCATCTGTGCGTGCAGGCGTGATGTCCATGTAACGC
ACTGGTTCAGGGAGGCGTGAAGGAGGACTGAAAGGGGAGAAAAAGATAGC
ACAACAGCTATTTAAAATTAAATAACACAACGGCTGTACAAACTTTTGAG
ACATGAAAGAGGACAAGAGACCGAATTAGATGGGGAAGGAAGAAAGAAAC
GCCAAATGTAAGTGCA

Coding sequence (CDS) from alignment at chr3:1509312..1511877+

>NO03G05300.1 ID=NO03G05300.1|Name=NO03G05300.1|organism=Nannochloropsis oceanica|type=CDS|length=1992bp|location=Sequence derived from alignment at chr3:1509312..1511877+ (Nannochloropsis oceanica)
ATGAATGGCACCAGCAGTAGCAGGTGCAGCACGCCCTGCTGGCATCCACA
ACTGCCGCGTTCTTGCCCTGCTTCCCCTTCCTCCCTCCTGGTGTCTCCCA
TGCGGCCCTCCTCCCAAATCTCCCCACACGATCAGTTTCGCTTTGTCGAG
GAGATCGGAACAGGAAGCTTTGGGGCGGTGTACCTGGCCATAGAACGTGC
GGAACGACTAACAAGTAGCATATCGAGGCAGCAGTTGTCTTCCAACCCTC
CCACCCTGGCTCTGGCCCGCCAAGACAGCAGCTGCAGCTGCAGCAGCTCG
GCGGTTAATGAAGAGGAAGGCGCCCTCCCAATGCCTATGATTCTCTCCTC
CTTCTCTTCTTCTGCCTCCTTCTCCTCTCCTTCTCTTTCCTTTTCCTCCT
CAAGCAGGCCCGGTACTCCCCGGACCCGACCCCTTCGACCCGCGCGAAAG
GTCGCCATCAAGGTGATTAATCTTGAAGCTCAAGAAGACGGGATGGAGGA
TATTCAACGCGAAATTGATATCCTTTCCCACTGCAATTGTCCGCAATTAA
CCCGCTATTTTGCTTCGTACGTCGTCGAGCATTCTCTCTGGATCGTTATG
GAGTATGTAGATGGAGGATCTCTGGGGGAGCTCCTGGCCCTTACCCCCCA
CGGCCGCTTAGGTGAAGTGGCGATCGCTGGGGCCATGAGCCAGCTATGCC
AGGCTTTGGCCTACCTGCACGGAGAGAGGAAAATCCATCGGGACGTGAAA
GCAAAAAACGTCCTCGTCTCCTCAACCGGTCTGGTGAAGCTTGCCGATTT
CGGCGTGACTGCCTCGTTGACGGAGACCATGGGAAAGCGACAAACCTTTG
CCGGGACGCCGTTTTGGATGGCGCCTGAGGTGATTTCTCAGACCTCATAT
GACTTCAAAGCGGACGTCTGGAGTCTGGGGATAACGGCGATGGAACTGGC
GAAGGGGGCTCCGCCCTATGCGAAGGTCCACCCCGTCCGGGCCTTGTTTT
TAATTCCGAAGAACCCGCCGCCACGGTTGGAGGATGAGGAGGAGGGCTCG
GGAGAGGGAAGGTGGTCGGAGGGGTTCAAGGAGTTTGTGGCGGCGTGTTT
GAGGAAGGATCCCGCGGAGAGACTGACGGCGGGGGAGTTGTCGTTGTTGC
CGTTCTTGGATGACGAGGGGAGGGTGGAAGAAGGAAGGGAGCAGCTGGTG
GCGTTGGTGAAGAGGCGAGTGCCTTCCCAGAGGTTGGAGCGGGAGGAGAT
GCTGCTGGCGGAGGAGGAACAACAGCAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGTGGGAGGGTAGGGGTGGGGAAGGGGAGAGGGTGGAGGAGGGCAGG
CCGGGGTGGGCGGAGGAGGAGGGGATAGGGAGGGGGGGCATTCGCCGGGG
TCCGACAAGTCGGATGATGGAGTTGACCTTGCACAGACAAGATACAGAGG
ACCGGAGTAGTAGTCGCAGCAGTAGCAGCAGCAGCGGCAACATCAGCAGA
ATCCGAATGTCCCACAGCGCCTCCTCTTCTCCTCGTGCATCCCGGCCGGG
TCAAGGGCAAGGATGGAGAGGGCAGCAACGGCGGAATCTAAAAATTCTAT
CTTCCGCCCGAGCCGCCCTCGAAAGAGGCTCTGGCTCCTCATCCACTTCC
TCCTCCACCGCCACCGCCACCCCCTCCCTCGCTTTTTCCCCCACTGGAGG
AAGGCGCCGCCGCTCACACCTTCGGCGGGGATCGAGCGGATGCCAAAGTC
TCAGCAGTAGCATTAGCAGTAATAGTAGTGGCAGCAGCAACAGCAGCAGT
GGCAGTATCAACGACAACGCCGGCGGCACCACCAATAAAACTGACAGCTT
TTCTTCCCTGTCATCCCTGGACCGCCAAGCAGGGACCCCGCCCATGGGCC
GCCGTTGGGGATCGAATGGGGGAAAGGAAGGAGGGAAATGTAAAGGAAGG
GGGGGGGAGGGAGAGGAAACGGTGATCGAGGAGGTTTTTTAG

Synonyms

Publications