NO03G05100.1, NO03G05100.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G05100.1
Unique Name	NO03G05100.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2242
Alignment location	chr3:1443633..1446647 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1443633..1446647 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G05100.1 vs.
Match: EWM29950.1 (hypothetical protein Naga_100247g5 [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 3.000e-44
Identity = 119/208 (57.21%), Postives = 153/208 (73.56%), Query Frame = 0

Query:    1 MRIFASIVTVAGLVAVA----SADINACPSRALLHTRGGGFFDKLDAKISSWTKSGNDAMDKASKSIDSASDKAQKGIDQADAKFKKVQMDAESKAKKLADDAKARSEKVKADAKMKAQKVADEAKAKAERLKAEAKAASEKAKARLEEQKKRAREAADKADKEANRLADQAKQKKSDLKASAKKAESAVDDGIEKARGIFAGIKGWF 205
            MR FAS  TVA L+ V+    +A+IN C S +LL+ RGGGFF+KLD+KISSWTKSG++A+D+ASK++DSASD+ +  ID+ DA+ KK Q DAE+KAKK A DAK                       KAE+ KAEAK+A+++ +A++EEQKKRA  AA++A+KEANRLADQAK  KS+ KASAKKAESA+DDGI+ ARGIF GIK +F
Sbjct:    1 MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAADAKV----------------------KAEKTKAEAKSAADRTRAKVEEQKKRAHAAAERAEKEANRLADQAKHAKSEWKASAKKAESALDDGIDHARGIFGGIKDFF 186

The following BLAST results are available for this feature:

BLAST of NO03G05100.1 vs.

BLAST of NO03G05100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29950.1	3.000e-44	57.21	hypothetical protein Naga_100247g5 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G05100	NO03G05100	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05100.1	NO03G05100.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05100.1.cds1	NO03G05100.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05100.1.cds2	NO03G05100.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05100.1.cds3	NO03G05100.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05100.1.cds4	NO03G05100.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05100.1.cds5	NO03G05100.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1443633..1446647-
coding sequence from alignment at chr3:1443633..1446647-

mRNA sequence

>NO03G05100.1 ID=NO03G05100.1|Name=NO03G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2242bp
CAGCAGAATATCCTCGCATCCCACCAACAAAATGCGCATCTTCGCCTCCA
TCGTGACAGTGGCCGGGCTTGTTGCTGTCGCCTCGGCCGACATCAACGCG
TGCCCCTCCCGTGCTTTGCTCCACACCCGCGGCGGCGGCTTCTTTGACAA
GCTCGACGCCAAAATCTCCTCCTGGACCAAGAGCGGCAATGATGCTATGG
ACAAGGCCTCCAAGTCGATTGACTCGGCCTCAGACAAGGCCCAAAAAGGT
ATCGATCAGGCGGACGCCAAGTTCAAGAAGGTCCAGATGGATGCTGAGTC
CAAGGCCAAGAAATTGGCAGACGACGCAAAGGCCAGGTCCGAGAAGGTGA
AGGCAGATGCAAAGATGAAGGCCCAGAAGGTGGCAGATGAGGCGAAAGCC
AAGGCGGAGAGGCTCAAGGCGGAAGCCAAGGCGGCTTCGGAGAAGGCCAA
GGCCCGATTGGAAGAGCAGAAGAAGAGGGCACGTGAGGCAGCCGATAAAG
CGGACAAGGAAGCGAATCGCCTCGCCGACCAAGCAAAGCAGAAGAAGTCT
GACTTGAAGGCGTCTGCGAAAAAAGCGGAATCGGCCGTGGATGACGGGAT
TGAGAAGGCCCGTGGTATTTTTGCGGGAATCAAGGGATGGTTTAATTAGG
ATGTGAGAGGGGCAGATGGCACTGCAGGAGGTCGGAAAGAGGGAGGCAGG
GAGGGAGGGGAGGAAAACCAGAGTAAAAATGGCAGGGCTATACCCATGAG
CGGCGAAGGGGTCGAAACAGCCCTCGTCAGAGATGGAACTCAAGAAAAGC
GATTTCCATACAGTTGAATACACAAAAACATGTGAATTCAGTAGGAAGAA
CAACCAACCTCGTTTATCCCATTCTCATCAATTATTGCTTTTGTTGTTGT
GTCGTTCACTCGGTCGCCCTATTCCCTTCCTTACCTTCGCCCCCTCCCTA
GGCGTGTGGATTGGGATACCACGCCCTGGGGTCGTTCTCGGGCCGACCTG
TGAAGGTGGTGGCCCATACGTCTACGTCCATCTCTTGTGCAAATGCCGCC
GCATCAAAGGAGGCAGGGAGGGAGGGAGGGGCCATGGCGAAGATGGACGT
GCCACTGCCGGACATCATCACGGCGGCGAACCCTTTCGAGAGCAGAGACT
CTTTGATTGTTTTGAGGCCAGGAATGCACTGGAAGGCGGGAGGCTCCAGG
TCGTTGACATATAGAGAGGGAGGGACAGGCTCGCCCTTACCGAGGCGGGT
GGTGAAAGCGGAGAGGAGGGCCCGAGGATCTTCTTTACTCAGGGCATTTA
AATCAAGCGCTTTGAAAACTGCGGGGGTAGAAAGACCGATGGGCGGCTTG
ACGATATAGAGGTGTGTGGAGGGGGATAGGGCGGGGACGGGTTCGAGTAT
TTCGCCGCGACCAGTGCAATATGCTGTGCCCTGGGAGAGGAAAAATGTTA
TGTCGGAGCCTAGCTCCTTAGACCACTCGATCAGGTCTTCATCACTGGCG
GGGCAGCCGAGGAGTTGGTTGGCTGCGAATAACGTTGTGGCGGCATTGCT
GCTCCCACCACCGAGACCGGCTTGGACGGGGGTGCGTTTCTCGAGGTAGA
CTTGGAAGTGGCGAGTCTTGCCTGTCTTACGACGAAAGAGGTCGAGCGCC
CGCAAGACCAAGTTACTCTTGTCCGTGACGAGGGATGTGAACGAAGAGGC
GAATTCATCTTGCGTGGCCGAGGCGGGGAGGGCTTTGAAGAGTAAAGTGT
CCCCAAAGGCGACGGTTTGGAAGAGGGAGGCTAGCTCGTGGTAGCCGTCT
TCACGACGGCGGATGATGCGGAGAAAGAGGTTGACCTTGGCGGGCGAAAA
GAGTTCGAGGTCAAAGTTGCCTTCTTTTCTTCTTGACTCGAGAGAGGAGG
ATGGAGTGCCAGCCACAACAAAGAGGCGTGCCCTGGTGGAGGAGGGGAGG
GACATGGCGGTCCTGGGCGCAAAGGAGGAGGGGGAGGTGGCATGTCCAAG
CCCGTTCCCGTTTAGCGGCGGAGCAAAAGCAGTGGTAGGATCGGGGAGGA
GAAGGACGAGACATGCGACGAGGAGGCAGGCCGACGGTGGTAGTTGCCAA
CGCCGCTGCTGCTGTGCCATGATCTATTAGTGGTATGCGTGTGTGTTTGG
TTGTGAAAGGTGGAAAGCATTTGCATCGTGATTGGAGGCCGTTGCCGTCC
AAGTGAGAAAAGCAACCTCCCCATTTCAAACGCAAAGTGCAC

protein sequence of NO03G05100.1

>NO03G05100.1-protein ID=NO03G05100.1-protein|Name=NO03G05100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MRIFASIVTVAGLVAVASADINACPSRALLHTRGGGFFDKLDAKISSWTK
SGNDAMDKASKSIDSASDKAQKGIDQADAKFKKVQMDAESKAKKLADDAK
ARSEKVKADAKMKAQKVADEAKAKAERLKAEAKAASEKAKARLEEQKKRA
REAADKADKEANRLADQAKQKKSDLKASAKKAESAVDDGIEKARGIFAGI
KGWFN*

mRNA from alignment at chr3:1443633..1446647-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G05100.1 ID=NO03G05100.1|Name=NO03G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3015bp|location=Sequence derived from alignment at chr3:1443633..1446647- (Nannochloropsis oceanica)
CAGCAGAATATCCTCGCATCCCACCAACAAAATGCGCATCTTCGCCTCCA
TCGTGACAGTGGCCGGGCTTGTTGCTGTCGCCTCGGCCGACATCAACGCG
TGCCCCTCCCGTGCTTTGCTCCACACCCGCGGCGGCGGCTTCTTTGACAA
GCTCGACGCCAAAATCTCCTCCTGGACCAAGAGCGGCAATGATGTACGTA
CCAAAGTCGTGCGGAATGCTCGGCATCAGCAGCAGTGTCAAAGCGCAGAA
GAAGATTTGTTCTGTCTCCACCTGACGCATTTTTATCCACGTCTTTTCTT
CCCTCCAGGCTATGGACAAGGCCTCCAAGTCGATTGACTCGGCCTCAGAC
AAGGCCCAAAAAGGTATCGATCAGGCGGACGCCAAGTTCAAGAAGGTCCA
GATGGATGCTGAGGTAAGGCAACGTGAAACAGTACGAGGCCAGTGATGTT
GAAGTTTGCGGGGCCCGAGCACGAGTAGCAGAGGACGGGCAGACAGGCAC
GACAAGTGGATCGTGATCCAAGAGGCAATGTGTGGTTTGAAAAAGTGCCT
CAAGAAGGGCATGTTCTTTGTGAGGCGCCTGCATTCAATTTTTAGTGGTC
TGGGCCGGGCAAGATTCCCCTTCCTTTTTGCTTTCGCACACACACACACC
CATACCCCCTTCTTTTCACTAACTTCCCCAAAAAAACACAGTCCAAGGCC
AAGAAATTGGCAGACGACGCAAAGGCCAGGTCCGAGAAGGTGAAGGCAGA
TGCAAAGGTACGTGCAAGAAGCATACAAATTAAAAAGATGGAGTCTGGGG
CCACGCAGATAAAACGGAACCAAGAACGCCGCCTAAGCGTACGGTCCCTC
CCCCCTATGCGTTCTCCTTTCCTTCTTTCCTTTTCATCAATACCTTTCTA
CCGTCACCTGGCACCAACATGCCTCTCTTCCTCCCCTCTCTTTCTTCCTG
CCTCTTTCCTTCCCCTACACATATTCAGATGAAGGCCCAGAAGGTGGCAG
ATGAGGCGAAAGCCAAGGCGGAGAGGCTCAAGGCGGAAGCCAAGGTTTGT
TTATTTTCATACGAATACTTATCATTTCCCCTCTCTTCCTTGTCTTCCTC
TCTCACACTCACTACTGCTTTCCCTCCCTCTCTCCCTTCCTACCATCGTT
TCTCCTAAACCAACCAACCGTCCGTCCCTCCTTAATCCCCCACGCATTCG
TAGGCGGCTTCGGAGAAGGCCAAGGCCCGATTGGAAGAGCAGAAGAAGAG
GGCACGTGAGGCAGCCGATAAAGCGGACAAGGAAGCGAATCGCCTCGCCG
ACCAAGCAAAGCAGAAGAAGTCTGACTTGAAGGCGTCTGCGAAAAAAGCG
GAATCGGCCGTGGATGACGGGATTGAGAAGGCCCGTGGTATTTTTGCGGG
AATCAAGGGATGGTTTAATTAGGATGTGAGAGGGGCAGATGGCACTGCAG
GAGGTCGGAAAGAGGGAGGCAGGGAGGGAGGGGAGGAAAACCAGAGTAAA
AATGGCAGGGCTATACCCATGAGCGGCGAAGGGGTCGAAACAGCCCTCGT
CAGAGATGGAACTCAAGAAAAGCGATTTCCATACAGTTGAATACACAAAA
ACATGTGAATTCAGTAGGAAGAACAACCAACCTCGTTTATCCCATTCTCA
TCAATTATTGCTTTTGTTGTTGTGTCGTTCACTCGGTCGCCCTATTCCCT
TCCTTACCTTCGCCCCCTCCCTAGGCGTGTGGATTGGGATACCACGCCCT
GGGGTCGTTCTCGGGCCGACCTGTGAAGGTGGTGGCCCATACGTCTACGT
CCATCTCTTGTGCAAATGCCGCCGCATCAAAGGAGGCAGGGAGGGAGGGA
GGGGCCATGGCGAAGATGGACGTGCCACTGCCGGACATCATCACGGCGGC
GAACCCTTTCGAGAGCAGAGACTCTTTGATTGTTTTGAGGCCAGGAATGC
ACTGGAAGGCGGGAGGCTCCAGGTCGTTGACATATAGAGAGGGAGGGACA
GGCTCGCCCTTACCGAGGCGGGTGGTGAAAGCGGAGAGGAGGGCCCGAGG
ATCTTCTTTACTCAGGGCATTTAAATCAAGCGCTTTGAAAACTGCGGGGG
TAGAAAGACCGATGGGCGGCTTGACGATATAGAGGTGTGTGGAGGGGGAT
AGGGCGGGGACGGGTTCGAGTATTTCGCCGCGACCAGTGCAATATGCTGT
GCCCTGGGAGAGGAAAAATGTTATGTCGGAGCCTAGCTCCTTAGACCACT
CGATCAGGTCTTCATCACTGGCGGGGCAGCCGAGGAGTTGGTTGGCTGCG
AATAACGTTGTGGCGGCATTGCTGCTCCCACCACCGAGACCGGCTTGGAC
GGGGGTGCGTTTCTCGAGGTAGACTTGGAAGTGGCGAGTCTTGCCTGTCT
TACGACGAAAGAGGTCGAGCGCCCGCAAGACCAAGTTACTCTTGTCCGTG
ACGAGGGATGTGAACGAAGAGGCGAATTCATCTTGCGTGGCCGAGGCGGG
GAGGGCTTTGAAGAGTAAAGTGTCCCCAAAGGCGACGGTTTGGAAGAGGG
AGGCTAGCTCGTGGTAGCCGTCTTCACGACGGCGGATGATGCGGAGAAAG
AGGTTGACCTTGGCGGGCGAAAAGAGTTCGAGGTCAAAGTTGCCTTCTTT
TCTTCTTGACTCGAGAGAGGAGGATGGAGTGCCAGCCACAACAAAGAGGC
GTGCCCTGGTGGAGGAGGGGAGGGACATGGCGGTCCTGGGCGCAAAGGAG
GAGGGGGAGGTGGCATGTCCAAGCCCGTTCCCGTTTAGCGGCGGAGCAAA
AGCAGTGGTAGGATCGGGGAGGAGAAGGACGAGACATGCGACGAGGAGGC
AGGCCGACGGTGGTAGTTGCCAACGCCGCTGCTGCTGTGCCATGATCTAT
TAGTGGTATGCGTGTGTGTTTGGTTGTGAAAGGTGGAAAGCATTTGCATC
GTGATTGGAGGCCGTTGCCGTCCAAGTGAGAAAAGCAACCTCCCCATTTC
AAACGCAAAGTGCAC

Coding sequence (CDS) from alignment at chr3:1443633..1446647-

>NO03G05100.1 ID=NO03G05100.1|Name=NO03G05100.1|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr3:1443633..1446647- (Nannochloropsis oceanica)
ATGCGCATCTTCGCCTCCATCGTGACAGTGGCCGGGCTTGTTGCTGTCGC
CTCGGCCGACATCAACGCGTGCCCCTCCCGTGCTTTGCTCCACACCCGCG
GCGGCGGCTTCTTTGACAAGCTCGACGCCAAAATCTCCTCCTGGACCAAG
AGCGGCAATGATGCTATGGACAAGGCCTCCAAGTCGATTGACTCGGCCTC
AGACAAGGCCCAAAAAGGTATCGATCAGGCGGACGCCAAGTTCAAGAAGG
TCCAGATGGATGCTGAGTCCAAGGCCAAGAAATTGGCAGACGACGCAAAG
GCCAGGTCCGAGAAGGTGAAGGCAGATGCAAAGATGAAGGCCCAGAAGGT
GGCAGATGAGGCGAAAGCCAAGGCGGAGAGGCTCAAGGCGGAAGCCAAGG
CGGCTTCGGAGAAGGCCAAGGCCCGATTGGAAGAGCAGAAGAAGAGGGCA
CGTGAGGCAGCCGATAAAGCGGACAAGGAAGCGAATCGCCTCGCCGACCA
AGCAAAGCAGAAGAAGTCTGACTTGAAGGCGTCTGCGAAAAAAGCGGAAT
CGGCCGTGGATGACGGGATTGAGAAGGCCCGTGGTATTTTTGCGGGAATC
AAGGGATGGTTTAATTAG

Synonyms

Publications