NO03G05030.1, NO03G05030.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G05030.1
Unique Name	NO03G05030.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1598
Alignment location	chr3:1426892..1429163 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1426892..1429163 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G05030.1 vs.
Match: OEU22647.1 (SGNH hydrolase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 146.4 bits (368), Expect = 2.500e-31
Identity = 85/234 (36.32%), Postives = 126/234 (53.85%), Query Frame = 0

Query:  275 RPYITLFGDSITQY--GWNPALLGYASLLAHTYTRCADVKNRGASGYTTRDAVRVLDSVFPLGPQSWVQAHP----PALVVILLGSNDQIQPGMWVEATTGEDHHVPLAEYTANYRCILTHLRT-----LQVELPLILVTPPPVGEDVKSA---------RTNGAIKEYREVVLSLGKEEGIPVFDLWKACEGEDVEKFNSYLVDGLHLNGAGNTVLYKGLMGVVGKHYPDLLP 489
            R  I LFGDSITQY  G  P+ +G+A+LL+ +Y R ADV NRG SGY TR A+ +L  +FP      V +      P    +  G+ND   P     + +G  H VP  EY  N   I+  +R         +L +I++TPPPV E+             R+N   ++Y EV  ++G     PV D W+   G D++ + S+L DGLHL+ +GN ++Y+GLM ++ + +P+L P
Sbjct:    4 RKPIVLFGDSITQYAYGEEPSKIGWAALLSGSYQRRADVLNRGFSGYNTRHALDLLPKLFPKNSNIDVDSSSTYLLPLFCTVFFGANDAALPPTPTNSDSGRQH-VPKEEYAKNLEKIVLSIRERTGTKTSDDLLIIIITPPPVDEETWKTKLGLYDHCDRSNLITRDYGEVAKTVGSSLDCPVLDTWELLCGNDLDIYKSHLSDGLHLSDSGNQLVYEGLMQIIKEKFPNLAP 236

The following BLAST results are available for this feature:

BLAST of NO03G05030.1 vs.

BLAST of NO03G05030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
OEU22647.1	2.500e-31	36.32	SGNH hydrolase [Fragilariopsis cylindrus CCMP1102]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G05030	NO03G05030	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05030.1	NO03G05030.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05030.1.cds1	NO03G05030.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05030.1.cds2	NO03G05030.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05030.1.cds3	NO03G05030.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05030.1.cds4	NO03G05030.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1426892..1429163+
coding sequence from alignment at chr3:1426892..1429163+

mRNA sequence

>NO03G05030.1 ID=NO03G05030.1|Name=NO03G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp
ATGCTTTCTTTGACGTTTTTCCTTCAACAACCACACGCCCTTTTACACAC
CTCGGTTACATACACCAACGTCCAGGACGAAGATGAGCGGGTAGGTGGGC
GCTCATTCGGAGGGATCGCCGCCGTCACTGCGGAGACTGATTTGCGTTGT
GTGATGAGCCGCGCAGCAGGGAGCAGTCGCCGCTACGAGAAGAGGGGATG
GAACATGTACATGAAGCGCGTGGACTGTCTTACTGCTAACCAGGCCCATC
TCTCCCTTATCCCACACCTAGTGCCTGAGGTTGAGCCGGGTGAGCTGGTG
GTGGAGGAGGTAGGCACCATGATGACCCACTATGTTGGGCTTGTGCAGGA
ACAGAAATTCGACGGGGCCGTGTCCATGTCGTATGACTACGGTATGCTCG
ACGACCCGCGATGGGAGTATGTGGATAGTTACATAGGCGGGTTAATCCTC
CCCGTGGTGTGGTGCCCGATCGTCATCCCCGGACAGTCGCTGTGTGAGGA
CAGCTTATCGATGCTGAGCAGTAGCTCCATGCCCGTCTCCTCCGCTAGAG
ATTTGATGCATAATAACAGCAATGACGCCATGGTAATCTGGGGGTCACGG
ATCTGGGGGCTGCGGGCCTTGGGCTTGGCAGTGGGCGTGGCAGGCGTCTT
GCTCTTGGCCCTGGTTATCACAGGGGAGGACTCCAGTAACAACCGCAGCA
ACAGCAACAAGAGCAAATTCATCCTCACCGATGTGGGCGCTAGATTCAGC
GGCATGAACGAAAAGGGCACATTGGACACCAACGACGATAATCTGCCTGC
TGGTCACATGCTCAATGACGACCGTCCGTACATCACCCTCTTCGGCGACA
GCATTACGCAATATGGGTGGAACCCTGCCCTCCTGGGGTATGCTAGCCTC
CTCGCTCACACCTACACACGTTGTGCCGACGTTAAGAACCGCGGTGCGTC
GGGCTACACGACGCGAGACGCAGTGCGCGTCCTGGATTCAGTCTTCCCTT
TGGGCCCGCAGAGCTGGGTCCAGGCCCACCCTCCCGCCCTTGTCGTCATC
CTCCTCGGCTCCAACGACCAGATTCAGCCGGGCATGTGGGTGGAAGCCAC
CACAGGAGAAGACCACCACGTGCCCTTGGCTGAATACACCGCCAACTACA
GATGTATTCTCACGCACCTCCGCACGCTTCAGGTGGAGTTGCCTCTTATC
TTGGTTACCCCTCCTCCTGTTGGCGAAGACGTGAAAAGCGCACGAACAAA
CGGTGCGATCAAGGAATACAGGGAAGTGGTTCTCTCGCTCGGGAAAGAAG
AGGGCATTCCCGTCTTCGACTTATGGAAAGCGTGTGAAGGGGAAGATGTT
GAGAAATTCAACTCTTATTTGGTCGACGGGCTGCATCTGAATGGGGCGGG
GAACACAGTGCTTTATAAAGGGCTGATGGGCGTGGTCGGAAAACACTACC
CGGACTTGCTTCCGGAGGGGACAAAGATGCCCAAGAGGGAGAGGGATCCT
TGGGAGGCGTGAGGGGAGGAGGGAGGAAGGGGAGGGAATAGGAATTAAGA
GAGGTACCCATAAAAATGTAAAAATAAAAGCGCCGTTGAAGTATAGGA

protein sequence of NO03G05030.1

>NO03G05030.1-protein ID=NO03G05030.1-protein|Name=NO03G05030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MLSLTFFLQQPHALLHTSVTYTNVQDEDERVGGRSFGGIAAVTAETDLRC
VMSRAAGSSRRYEKRGWNMYMKRVDCLTANQAHLSLIPHLVPEVEPGELV
VEEVGTMMTHYVGLVQEQKFDGAVSMSYDYGMLDDPRWEYVDSYIGGLIL
PVVWCPIVIPGQSLCEDSLSMLSSSSMPVSSARDLMHNNSNDAMVIWGSR
IWGLRALGLAVGVAGVLLLALVITGEDSSNNRSNSNKSKFILTDVGARFS
GMNEKGTLDTNDDNLPAGHMLNDDRPYITLFGDSITQYGWNPALLGYASL
LAHTYTRCADVKNRGASGYTTRDAVRVLDSVFPLGPQSWVQAHPPALVVI
LLGSNDQIQPGMWVEATTGEDHHVPLAEYTANYRCILTHLRTLQVELPLI
LVTPPPVGEDVKSARTNGAIKEYREVVLSLGKEEGIPVFDLWKACEGEDV
EKFNSYLVDGLHLNGAGNTVLYKGLMGVVGKHYPDLLPEGTKMPKRERDP
WEA*

mRNA from alignment at chr3:1426892..1429163+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G05030.1 ID=NO03G05030.1|Name=NO03G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2272bp|location=Sequence derived from alignment at chr3:1426892..1429163+ (Nannochloropsis oceanica)
ATGCTTTCTTTGACGTTTTTCCTTCAACAACCACACGCCCTTTTACACAC
CTCGGTTACATACACCAACGTCCAGGACGAAGATGAGCGGGTAGGTGGGC
GCTCATTCGGAGGGATCGCCGCCGTCACTGCGGAGACTGATTTGCGTTGT
GTGATGAGCCGCGCAGCAGGGAGCAGTCGCCGCTACGAGAAGAGGGGATG
GAACATGTACATGAAGCGCGTGGACTGTCTTACTGCTAACCAGGCCCATC
TCTCCCTTATCCCACACCTAGTGCCTGAGGTTGAGCCGGGTGAGCTGGTG
GTGGAGGAGGTAGGCACCATGATGACCCACTATGTTGGGCTTGTGCAGGA
ACAGAAATTCGACGGGGCCGTGTCCATGTCGTATGACTACGGTATGCTCG
ACGACCCGCGATGGGAGTATGTGGATAGTTACATAGGCGGGTTAATCCTC
CCCGTGGTGTGGTGCCCGATCGTCATCCCCGGACAGGTGCATGAACTGCT
GCAGTACTAGGCAGATGGCGCGGCCGGCGGTGGACAACACGGCCCCGAGG
GTGCAGCAGGAGGCGATAGAGGCAGTGTGATCTTGCGCGAAGGATTTACT
CGATCGCCTCCACCGCCTCCACCACCTCCACCAGCACGTTTGTGCCTCAA
GAATGGGGTAGTCGCTGTGTGAGGTGTGTGTAGCGGTGAGGTTGTTGTCA
TGTAGAAACGGATCAACGCGTCAAGGTCTTGCCAGAGATCGCTTGAATGG
CCCCAGATTCTATTTGAGGGAGGATCCGGTAGATTTCGATGATCTATTTC
GTTTTTGTGTTTTGGTTTTGGTTCATGAGCTTTGTTTGTCTTCGTTACAT
TCGAACCAAGGCATCGGCAGTGGATGATCGGCAGGGGATGCAAGCCTATC
CCGGACACAGTGCCGCCTGGACCACGTGATTGTTTTGTCGGTGCATTTCA
TACTTCTGCCTTATTATTAACACATCATCTACGCCCCCCCCATTGCAGGA
CAGCTTATCGATGCTGAGCAGTAGCTCCATGCCCGTCTCCTCCGCTAGAG
ATTTGATGCATAATAACAGCAATGACGCCATGGTAATCTGGGGGTCACGG
ATCTGGGGGCTGCGGGCCTTGGGCTTGGCAGTGGGCGTGGCAGGCGTCTT
GCTCTTGGCCCTGGTTATCACAGGGGAGGACTCCAGTAACAACCGCAGCA
ACAGCAACAAGAGCAAATTCATCCTCACCGATGTGGGCGCTAGATTCAGC
GGCATGAACGAAAAGGGCACATTGGACACCAACGACGATAATCTGCCTGC
TGGTCACATGCTCAATGACGACCGTCCGTACATCACCCTCTTCGGTGCGT
GCGATAATTATCCCCTGCATCCATTTGACAAGCTTCCTTGGATGCCACTT
GAACCGTTGTATCGGCCACTCTGTTTGAGTAGATTATAAACTCTACAGAC
CCCGTGAAATACCTATTTCTCACACTTTATCCACGACCCATTTTTCCTCT
GCTCTTTTTCCGTTGCAGGCGACAGCATTACGCAATATGGGTGGAACCCT
GCCCTCCTGGGGTATGCTAGCCTCCTCGCTCACACCTACACACGTTGTGC
CGACGTTAAGAACCGCGGTGCGTCGGGCTACACGACGCGAGACGCAGTGC
GCGTCCTGGATTCAGTCTTCCCTTTGGGCCCGCAGAGCTGGGTCCAGGCC
CACCCTCCCGCCCTTGTCGTCATCCTCCTCGGCTCCAACGACCAGATTCA
GCCGGGCATGTGGGTGGAAGCCACCACAGGAGAAGACCACCACGTGCCCT
TGGCTGAATACACCGCCAACTACAGATGTATTCTCACGCACCTCCGCACG
CTTCAGGTGGAGTTGCCTCTTATCTTGGTTACCCCTCCTCCTGTTGGCGA
AGACGTGAAAAGCGCACGAACAAACGGTGCGATCAAGGAATACAGGGAAG
TGGTTCTCTCGCTCGGGAAAGAAGAGGGCATTCCCGTCTTCGACTTATGG
AAAGCGTGTGAAGGGGAAGATGTTGAGAAATTCAACTCTTATTTGGTCGA
CGGGCTGCATCTGAATGGGGCGGGGAACACAGTGCTTTATAAAGGGCTGA
TGGGCGTGGTCGGAAAACACTACCCGGACTTGCTTCCGGAGGGGACAAAG
ATGCCCAAGAGGGAGAGGGATCCTTGGGAGGCGTGAGGGGAGGAGGGAGG
AAGGGGAGGGAATAGGAATTAAGAGAGGTACCCATAAAAATGTAAAAATA
AAAGCGCCGTTGAAGTATAGGA

Coding sequence (CDS) from alignment at chr3:1426892..1429163+

>NO03G05030.1 ID=NO03G05030.1|Name=NO03G05030.1|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at chr3:1426892..1429163+ (Nannochloropsis oceanica)
ATGCTTTCTTTGACGTTTTTCCTTCAACAACCACACGCCCTTTTACACAC
CTCGGTTACATACACCAACGTCCAGGACGAAGATGAGCGGGTAGGTGGGC
GCTCATTCGGAGGGATCGCCGCCGTCACTGCGGAGACTGATTTGCGTTGT
GTGATGAGCCGCGCAGCAGGGAGCAGTCGCCGCTACGAGAAGAGGGGATG
GAACATGTACATGAAGCGCGTGGACTGTCTTACTGCTAACCAGGCCCATC
TCTCCCTTATCCCACACCTAGTGCCTGAGGTTGAGCCGGGTGAGCTGGTG
GTGGAGGAGGTAGGCACCATGATGACCCACTATGTTGGGCTTGTGCAGGA
ACAGAAATTCGACGGGGCCGTGTCCATGTCGTATGACTACGGTATGCTCG
ACGACCCGCGATGGGAGTATGTGGATAGTTACATAGGCGGGTTAATCCTC
CCCGTGGTGTGGTGCCCGATCGTCATCCCCGGACAGTCGCTGTGTGAGGA
CAGCTTATCGATGCTGAGCAGTAGCTCCATGCCCGTCTCCTCCGCTAGAG
ATTTGATGCATAATAACAGCAATGACGCCATGGTAATCTGGGGGTCACGG
ATCTGGGGGCTGCGGGCCTTGGGCTTGGCAGTGGGCGTGGCAGGCGTCTT
GCTCTTGGCCCTGGTTATCACAGGGGAGGACTCCAGTAACAACCGCAGCA
ACAGCAACAAGAGCAAATTCATCCTCACCGATGTGGGCGCTAGATTCAGC
GGCATGAACGAAAAGGGCACATTGGACACCAACGACGATAATCTGCCTGC
TGGTCACATGCTCAATGACGACCGTCCGTACATCACCCTCTTCGGCGACA
GCATTACGCAATATGGGTGGAACCCTGCCCTCCTGGGGTATGCTAGCCTC
CTCGCTCACACCTACACACGTTGTGCCGACGTTAAGAACCGCGGTGCGTC
GGGCTACACGACGCGAGACGCAGTGCGCGTCCTGGATTCAGTCTTCCCTT
TGGGCCCGCAGAGCTGGGTCCAGGCCCACCCTCCCGCCCTTGTCGTCATC
CTCCTCGGCTCCAACGACCAGATTCAGCCGGGCATGTGGGTGGAAGCCAC
CACAGGAGAAGACCACCACGTGCCCTTGGCTGAATACACCGCCAACTACA
GATGTATTCTCACGCACCTCCGCACGCTTCAGGTGGAGTTGCCTCTTATC
TTGGTTACCCCTCCTCCTGTTGGCGAAGACGTGAAAAGCGCACGAACAAA
CGGTGCGATCAAGGAATACAGGGAAGTGGTTCTCTCGCTCGGGAAAGAAG
AGGGCATTCCCGTCTTCGACTTATGGAAAGCGTGTGAAGGGGAAGATGTT
GAGAAATTCAACTCTTATTTGGTCGACGGGCTGCATCTGAATGGGGCGGG
GAACACAGTGCTTTATAAAGGGCTGATGGGCGTGGTCGGAAAACACTACC
CGGACTTGCTTCCGGAGGGGACAAAGATGCCCAAGAGGGAGAGGGATCCT
TGGGAGGCGTGA

Synonyms

Publications