NO03G04670.1, NO03G04670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04670.1
Unique NameNO03G04670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1569
Alignment locationchr3:1335021..1336589 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1335021..1336589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04670.1 vs.
Match: EWM29905.1 (alpha- -mannosyltransferase alg2 [Nannochloropsis gaditana])

HSP 1 Score: 563.5 bits (1451), Expect = 6.700e-157
Identity = 310/501 (61.88%), Postives = 371/501 (74.05%), Query Frame = 0 
Query:   28 SSALPAIPPA--LHVAFLHLDLGIGGAEQLVVNAAVALQQRGHRVTLWTTHHDPTHCFAETRGDGPLAPHVRVAGDWLPRQILGRFRALCAVVRMLYLAFMVGLLTRMGELCWWHRRGNEDRKQQQQQLRHDHIDIVFCDGVSAMVPLLRFLWRFPVLFYCHFPDKLLCTDRASLIKRCYRAPLDRIEESTTGAATLIAVNSHFTAQVFTEAFPSLPSRHGTPAVIYPAINLKSFVPPKAAAATTTITENAASRGNVANITRE--LRPFVSLNRFERKKNIGLALEALALVRTSLQHQAEDQKLNQENLLKELRLIIAGGYDDAVVENKEYMRELQSQAQQLDLSDCVSFQPSISDATRATLLQEALAVLYTPDREHFGIVPLEAMYAGSPVLAVASGGPLETVLHGKTGFLCEGTGKGFAEAMLRLLRKPESRDEMGRVGHEYVKEKFGLDAFATTLEKAVLDTRTRA---REGEQIWRGGIIWVLVMVGMVMLAQALLY 522
            S A  A PP+  LHV FLHLDLGIGGAEQL+VNAAVALQQ  H VT+WTTHHD +HCF ETRG G LA H+ VAGDWLPR +LGRF A+CAV+RMLYLA +V + T    L     R +E +K Q  +     +D+V CDGVSAMVPLLR++  FPVLFYCHFPDKLLCT+RAS+ KR YRAPLD +EE TTGAATLIAVNS FTA++F E FP L SRH  PAVI+PAINL  FVPPKA A+    T +A        + +E  LRPFVSLNRFERKKNIGLALEALAL+RT L+    D  +N  +    LRL+IAGGYD+AV EN+EYM +LQ++A  L +++ +SFQPSISD+ RA LLQ+ALAVLYTPDREHFGIVPLEAMYAGSPV+AVASGGPLETV+ G TGFLC+G  + FA AM R +  P  ++ MG  GH +VKEKFGLD FA TLE AVLDTR +A   R+ +Q  R  I+  +  + +++LA  L +
Sbjct:    9 SDAPSADPPSETLHVTFLHLDLGIGGAEQLIVNAAVALQQLEHHVTIWTTHHDASHCFGETRGAGSLASHIHVAGDWLPRHVLGRFTAMCAVIRMLYLALVVWISTL--SLRKSSCRHSERKKGQIDR----RVDVVICDGVSAMVPLLRYVCGFPVLFYCHFPDKLLCTNRASVWKRFYRAPLDWLEEKTTGAATLIAVNSLFTAKIFAETFPRLLSRHPAPAVIHPAINLGRFVPPKAGASAFP-THDATQEETKGAVRKEDALRPFVSLNRFERKKNIGLALEALALLRTRLETDWADGHVNGSS---SLRLVIAGGYDEAVRENREYMDDLQARASALGVAESISFQPSISDSERAALLQDALAVLYTPDREHFGIVPLEAMYAGSPVVAVASGGPLETVVDGTTGFLCQGDPECFANAMYRFVVDPTLKETMGAAGHVHVKEKFGLDMFAKTLEGAVLDTRRQAQRERDDDQGERREIMISVTGITILLLACGLYH 499
The following BLAST results are available for this feature:
BLAST of NO03G04670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29905.16.700e-15761.88alpha- -mannosyltransferase alg2 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04670NO03G04670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04670.1NO03G04670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04670.1.cds1NO03G04670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04670.1 ID=NO03G04670.1|Name=NO03G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
ATGGACGCCTCCCCCGACCCCCAAGACACGCTCGCTCGAGAAATGCAGCG
AAAAGGACTTCTTCGCCCACTCGCCTCCTCGTCCTCAGCCTTACCGGCCA
TTCCACCAGCCTTGCACGTCGCCTTTTTGCATCTTGACCTGGGCATCGGC
GGGGCGGAGCAGCTAGTGGTGAACGCTGCCGTGGCCCTACAGCAGCGCGG
GCATCGCGTCACCTTGTGGACGACCCACCACGATCCGACCCATTGCTTTG
CCGAGACTCGGGGAGACGGTCCCTTGGCACCGCACGTGCGCGTGGCCGGG
GATTGGCTGCCCAGGCAAATCCTCGGTAGGTTTAGAGCACTATGTGCGGT
GGTCCGTATGCTGTACTTGGCCTTTATGGTGGGGCTCTTGACGAGGATGG
GGGAGTTATGCTGGTGGCATCGCCGCGGGAACGAGGATAGGAAGCAGCAG
CAGCAACAGCTGCGACACGATCATATAGACATAGTGTTTTGTGACGGCGT
CTCAGCGATGGTGCCTTTACTGCGCTTCTTGTGGAGATTTCCTGTATTGT
TCTACTGCCACTTTCCCGACAAGCTCCTCTGCACAGACCGAGCCTCGTTA
ATAAAGCGTTGCTATCGCGCGCCATTGGATAGGATCGAGGAAAGTACCAC
CGGGGCCGCCACTCTCATTGCGGTCAATAGTCATTTTACTGCTCAGGTCT
TTACCGAGGCTTTTCCAAGTTTGCCGTCTCGACATGGGACACCGGCGGTG
ATTTATCCTGCCATCAACTTGAAGTCCTTCGTGCCCCCCAAAGCAGCAGC
AGCAACAACAACAATAACGGAAAATGCAGCCAGTAGAGGAAATGTGGCAA
ACATTACAAGGGAGCTCCGTCCTTTCGTTTCTCTCAATCGTTTTGAAAGA
AAGAAGAATATTGGCCTGGCCTTGGAAGCCCTCGCCCTCGTCCGCACCAG
TCTCCAACATCAAGCAGAAGACCAAAAATTAAATCAAGAAAATCTGCTGA
AGGAACTCCGCCTCATCATCGCTGGCGGATACGACGACGCCGTCGTCGAA
AACAAGGAGTACATGCGAGAGCTTCAATCCCAAGCTCAACAACTCGACCT
TTCCGACTGCGTCTCCTTTCAACCCTCTATCTCTGATGCCACCCGGGCCA
CCCTTCTACAAGAGGCGCTGGCAGTGCTATATACCCCTGATCGAGAGCAT
TTTGGGATCGTGCCATTAGAAGCTATGTATGCAGGGAGCCCTGTGTTGGC
AGTCGCGTCGGGAGGGCCCCTGGAAACAGTACTTCATGGGAAGACCGGTT
TTTTATGTGAGGGGACAGGAAAGGGGTTTGCAGAGGCAATGCTTCGGTTG
CTGAGGAAGCCGGAGTCAAGGGATGAGATGGGGAGGGTGGGACACGAGTA
TGTGAAAGAAAAATTTGGCTTGGATGCCTTCGCAACGACATTGGAGAAGG
CAGTATTGGACACGAGGACGAGGGCGAGGGAGGGCGAGCAGATATGGAGA
GGAGGAATAATATGGGTGTTGGTGATGGTGGGAATGGTGATGCTGGCGCA
AGCATTGTTGTATAAATAG
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protein sequence of NO03G04670.1

>NO03G04670.1-protein ID=NO03G04670.1-protein|Name=NO03G04670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MDASPDPQDTLAREMQRKGLLRPLASSSSALPAIPPALHVAFLHLDLGIG
GAEQLVVNAAVALQQRGHRVTLWTTHHDPTHCFAETRGDGPLAPHVRVAG
DWLPRQILGRFRALCAVVRMLYLAFMVGLLTRMGELCWWHRRGNEDRKQQ
QQQLRHDHIDIVFCDGVSAMVPLLRFLWRFPVLFYCHFPDKLLCTDRASL
IKRCYRAPLDRIEESTTGAATLIAVNSHFTAQVFTEAFPSLPSRHGTPAV
IYPAINLKSFVPPKAAAATTTITENAASRGNVANITRELRPFVSLNRFER
KKNIGLALEALALVRTSLQHQAEDQKLNQENLLKELRLIIAGGYDDAVVE
NKEYMRELQSQAQQLDLSDCVSFQPSISDATRATLLQEALAVLYTPDREH
FGIVPLEAMYAGSPVLAVASGGPLETVLHGKTGFLCEGTGKGFAEAMLRL
LRKPESRDEMGRVGHEYVKEKFGLDAFATTLEKAVLDTRTRAREGEQIWR
GGIIWVLVMVGMVMLAQALLYK*
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mRNA from alignment at chr3:1335021..1336589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04670.1 ID=NO03G04670.1|Name=NO03G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at chr3:1335021..1336589- (Nannochloropsis oceanica)
ATGGACGCCTCCCCCGACCCCCAAGACACGCTCGCTCGAGAAATGCAGCG
AAAAGGACTTCTTCGCCCACTCGCCTCCTCGTCCTCAGCCTTACCGGCCA
TTCCACCAGCCTTGCACGTCGCCTTTTTGCATCTTGACCTGGGCATCGGC
GGGGCGGAGCAGCTAGTGGTGAACGCTGCCGTGGCCCTACAGCAGCGCGG
GCATCGCGTCACCTTGTGGACGACCCACCACGATCCGACCCATTGCTTTG
CCGAGACTCGGGGAGACGGTCCCTTGGCACCGCACGTGCGCGTGGCCGGG
GATTGGCTGCCCAGGCAAATCCTCGGTAGGTTTAGAGCACTATGTGCGGT
GGTCCGTATGCTGTACTTGGCCTTTATGGTGGGGCTCTTGACGAGGATGG
GGGAGTTATGCTGGTGGCATCGCCGCGGGAACGAGGATAGGAAGCAGCAG
CAGCAACAGCTGCGACACGATCATATAGACATAGTGTTTTGTGACGGCGT
CTCAGCGATGGTGCCTTTACTGCGCTTCTTGTGGAGATTTCCTGTATTGT
TCTACTGCCACTTTCCCGACAAGCTCCTCTGCACAGACCGAGCCTCGTTA
ATAAAGCGTTGCTATCGCGCGCCATTGGATAGGATCGAGGAAAGTACCAC
CGGGGCCGCCACTCTCATTGCGGTCAATAGTCATTTTACTGCTCAGGTCT
TTACCGAGGCTTTTCCAAGTTTGCCGTCTCGACATGGGACACCGGCGGTG
ATTTATCCTGCCATCAACTTGAAGTCCTTCGTGCCCCCCAAAGCAGCAGC
AGCAACAACAACAATAACGGAAAATGCAGCCAGTAGAGGAAATGTGGCAA
ACATTACAAGGGAGCTCCGTCCTTTCGTTTCTCTCAATCGTTTTGAAAGA
AAGAAGAATATTGGCCTGGCCTTGGAAGCCCTCGCCCTCGTCCGCACCAG
TCTCCAACATCAAGCAGAAGACCAAAAATTAAATCAAGAAAATCTGCTGA
AGGAACTCCGCCTCATCATCGCTGGCGGATACGACGACGCCGTCGTCGAA
AACAAGGAGTACATGCGAGAGCTTCAATCCCAAGCTCAACAACTCGACCT
TTCCGACTGCGTCTCCTTTCAACCCTCTATCTCTGATGCCACCCGGGCCA
CCCTTCTACAAGAGGCGCTGGCAGTGCTATATACCCCTGATCGAGAGCAT
TTTGGGATCGTGCCATTAGAAGCTATGTATGCAGGGAGCCCTGTGTTGGC
AGTCGCGTCGGGAGGGCCCCTGGAAACAGTACTTCATGGGAAGACCGGTT
TTTTATGTGAGGGGACAGGAAAGGGGTTTGCAGAGGCAATGCTTCGGTTG
CTGAGGAAGCCGGAGTCAAGGGATGAGATGGGGAGGGTGGGACACGAGTA
TGTGAAAGAAAAATTTGGCTTGGATGCCTTCGCAACGACATTGGAGAAGG
CAGTATTGGACACGAGGACGAGGGCGAGGGAGGGCGAGCAGATATGGAGA
GGAGGAATAATATGGGTGTTGGTGATGGTGGGAATGGTGATGCTGGCGCA
AGCATTGTTGTATAAATAG
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Coding sequence (CDS) from alignment at chr3:1335021..1336589-

>NO03G04670.1 ID=NO03G04670.1|Name=NO03G04670.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr3:1335021..1336589- (Nannochloropsis oceanica)
ATGGACGCCTCCCCCGACCCCCAAGACACGCTCGCTCGAGAAATGCAGCG
AAAAGGACTTCTTCGCCCACTCGCCTCCTCGTCCTCAGCCTTACCGGCCA
TTCCACCAGCCTTGCACGTCGCCTTTTTGCATCTTGACCTGGGCATCGGC
GGGGCGGAGCAGCTAGTGGTGAACGCTGCCGTGGCCCTACAGCAGCGCGG
GCATCGCGTCACCTTGTGGACGACCCACCACGATCCGACCCATTGCTTTG
CCGAGACTCGGGGAGACGGTCCCTTGGCACCGCACGTGCGCGTGGCCGGG
GATTGGCTGCCCAGGCAAATCCTCGGTAGGTTTAGAGCACTATGTGCGGT
GGTCCGTATGCTGTACTTGGCCTTTATGGTGGGGCTCTTGACGAGGATGG
GGGAGTTATGCTGGTGGCATCGCCGCGGGAACGAGGATAGGAAGCAGCAG
CAGCAACAGCTGCGACACGATCATATAGACATAGTGTTTTGTGACGGCGT
CTCAGCGATGGTGCCTTTACTGCGCTTCTTGTGGAGATTTCCTGTATTGT
TCTACTGCCACTTTCCCGACAAGCTCCTCTGCACAGACCGAGCCTCGTTA
ATAAAGCGTTGCTATCGCGCGCCATTGGATAGGATCGAGGAAAGTACCAC
CGGGGCCGCCACTCTCATTGCGGTCAATAGTCATTTTACTGCTCAGGTCT
TTACCGAGGCTTTTCCAAGTTTGCCGTCTCGACATGGGACACCGGCGGTG
ATTTATCCTGCCATCAACTTGAAGTCCTTCGTGCCCCCCAAAGCAGCAGC
AGCAACAACAACAATAACGGAAAATGCAGCCAGTAGAGGAAATGTGGCAA
ACATTACAAGGGAGCTCCGTCCTTTCGTTTCTCTCAATCGTTTTGAAAGA
AAGAAGAATATTGGCCTGGCCTTGGAAGCCCTCGCCCTCGTCCGCACCAG
TCTCCAACATCAAGCAGAAGACCAAAAATTAAATCAAGAAAATCTGCTGA
AGGAACTCCGCCTCATCATCGCTGGCGGATACGACGACGCCGTCGTCGAA
AACAAGGAGTACATGCGAGAGCTTCAATCCCAAGCTCAACAACTCGACCT
TTCCGACTGCGTCTCCTTTCAACCCTCTATCTCTGATGCCACCCGGGCCA
CCCTTCTACAAGAGGCGCTGGCAGTGCTATATACCCCTGATCGAGAGCAT
TTTGGGATCGTGCCATTAGAAGCTATGTATGCAGGGAGCCCTGTGTTGGC
AGTCGCGTCGGGAGGGCCCCTGGAAACAGTACTTCATGGGAAGACCGGTT
TTTTATGTGAGGGGACAGGAAAGGGGTTTGCAGAGGCAATGCTTCGGTTG
CTGAGGAAGCCGGAGTCAAGGGATGAGATGGGGAGGGTGGGACACGAGTA
TGTGAAAGAAAAATTTGGCTTGGATGCCTTCGCAACGACATTGGAGAAGG
CAGTATTGGACACGAGGACGAGGGCGAGGGAGGGCGAGCAGATATGGAGA
GGAGGAATAATATGGGTGTTGGTGATGGTGGGAATGGTGATGCTGGCGCA
AGCATTGTTGTATAAATAG
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Synonyms
Publications