NO03G04480.1, NO03G04480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04480.1
Unique NameNO03G04480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1632
Alignment locationchr3:1288495..1290615 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1288495..1290615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04480.1 vs.
Match: EWM29865.1 (s-adenosylmethionine-dependent methyltransferase domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 318.2 bits (814), Expect = 5.100e-83
Identity = 154/251 (61.35%), Postives = 199/251 (79.28%), Query Frame = 0 
Query:  297 LNRRELFVPALLALGSATLLLSNTIQDVHRYDEIHKQLFAMLAPASEAEEGRSGGQEQQQQPRRLRVLEIGVGEGVNVKYYPSGCEVIGLDPHLKREALSVAQAKAKARKIEFSLIEGAAESLPFPDRSFDAVVSTLVFCSVQSPPRALREVARVLKKGGRFLFIEHVWAGEREHPVLHAVQQAVDPLQALLADGCHLIRRTDELFVGEARQGG----RGGGLFERVEKIERLEVDTQWPITVQVAGILVK 544
            L+RRE F+PAL+ALGS  LLL+ ++ +   Y+ +H++LFA+L+ ++      SG  E  +  R  +VLEIGVG+GVNVKYYPSGCEV+GLDP+L ++A+SVAQ+KAKAR I++S +EG AESLPFPD SFDAVVSTLVFCSVQ   RAL EVARVL+ GG+FLF+EH+WAGE+EHPVLH VQ  +DPLQA L +GCHL+R TD+L +GE + GG     G  LF+RVE++  LE+DTQWP++VQVAG+LVK
Sbjct:  151 LSRRESFLPALIALGSGALLLNKSLNEERAYEGLHQELFALLSASA------SGAGEAGRDVRAPKVLEIGVGQGVNVKYYPSGCEVVGLDPNLNQDAMSVAQSKAKARNIQWSALEGRAESLPFPDASFDAVVSTLVFCSVQDQARALTEVARVLRPGGKFLFVEHIWAGEKEHPVLHRVQGIMDPLQAFLVNGCHLVRHTDDLLLGETKGGGGRDREGVKLFDRVERLNYLEMDTQWPVSVQVAGVLVK 395
The following BLAST results are available for this feature:
BLAST of NO03G04480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29865.15.100e-8361.35s-adenosylmethionine-dependent methyltransferase d... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04480NO03G04480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04480.1NO03G04480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04480.1.cds1NO03G04480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04480.1.cds2NO03G04480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04480.1.cds3NO03G04480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04480.1 ID=NO03G04480.1|Name=NO03G04480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp
ATGGAGGACGAGTGGTCCATGGTGGTGCTGTTAGAGGCTATCCTAGGCTT
GCTCACATATACCATTCCAGCCTTGTGGCAGTCTCGAGAAGCAGCCGTCT
TTTCCGCCGAGGCCGACGACCCCGACTACCTGCCTTTGCCCTCACGGCTC
TGGCGTCTCGCGGGCATCATATCCCTGGCTTCATACACCAGCACCATAAT
CACGCGCACCGAAGGTTTCTTAAATATAGGGACCGAGAAAGTGGGCGAGC
AAACGCTGCGGTTCTTGGGTGGAGTTATACTGGGAACCCCGTATTTCTAC
GTTTCTGCCGTAGCGCTTGGAGCACCTTGGAAAGACATGACAGATCGAAC
CGCAGCCTGGGCGCTGATGATGGGCGCGTTGGTTGGCGGGCCTTTGGGAG
CAGCTACATCTAACTTGAGACAAATGCGTCTGCCGCCATTGTGGCAGGGT
CCTCCGGGAGAGAGTGCCTTGATACGGTTTCGCGCGTTGGGATGCTGTGC
GGGGGCTTGGGTAGGCGCTTTTTTTATTCCTTTGGATTGGGCAATGCCTT
TTCAAGAGTGGCCTTTACCGGCTGCCGAAGAGGCCATGGATAGAAGAAGG
GAGCAAATGCCGTCCAGAATCTGGGCCCCTCTCTATCTCCGCCCCTTCTT
CCTCCTCCTCTTCCTGACACTTCTACAAGTCGATCTCCACGCTGCAACCA
AAATATTCTTGACTGAGCCTGCCTTTTTGACTGGTACCGCCCGCTCTTCC
TACTCGTCCTTGTCAACCTCCTTCTCCGCCATTGCTGCCCCTTCCCTCTA
TCCCTCCCGAAACCGTTTACACCTCGCCACAAGCGCGAGCCGTAACACCG
ACGAGGATAACGGCGACGACCTCTTTCCTCCCCCCCTTCTCAACCGTCGC
GAGCTCTTCGTCCCCGCCCTCCTCGCCCTGGGGAGCGCTACCCTTCTCCT
CTCCAACACAATCCAAGACGTACACCGGTATGACGAAATCCATAAACAGC
TGTTCGCCATGCTCGCACCCGCATCTGAAGCGGAGGAGGGAAGAAGCGGC
GGACAGGAGCAACAGCAACAGCCGCGACGTTTGCGTGTGTTGGAGATTGG
GGTGGGAGAGGGCGTGAATGTGAAATATTACCCGTCGGGATGTGAGGTGA
TCGGCTTGGATCCGCATTTAAAAAGGGAGGCGTTGAGTGTCGCGCAGGCA
AAAGCAAAAGCTCGCAAAATTGAGTTCTCCCTCATCGAAGGCGCTGCCGA
GTCTCTCCCCTTTCCCGACCGGAGCTTTGACGCCGTCGTCTCCACCCTTG
TTTTCTGCTCCGTGCAAAGCCCACCGCGAGCCCTAAGAGAGGTCGCGCGT
GTCCTTAAAAAAGGTGGGAGGTTTTTATTCATCGAGCATGTGTGGGCGGG
AGAGAGAGAACACCCGGTGCTGCACGCAGTCCAGCAGGCGGTCGATCCAC
TGCAGGCGCTCTTGGCGGATGGATGTCATCTAATAAGACGTACGGATGAG
CTGTTTGTGGGCGAGGCGAGGCAAGGAGGGAGGGGGGGGGGGCTGTTTGA
GCGGGTGGAAAAGATTGAGAGGCTGGAGGTCGACACGCAATGGCCGATTA
CGGTGCAGGTGGCGGGGATCTTGGTCAAATAA
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protein sequence of NO03G04480.1

>NO03G04480.1-protein ID=NO03G04480.1-protein|Name=NO03G04480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MEDEWSMVVLLEAILGLLTYTIPALWQSREAAVFSAEADDPDYLPLPSRL
WRLAGIISLASYTSTIITRTEGFLNIGTEKVGEQTLRFLGGVILGTPYFY
VSAVALGAPWKDMTDRTAAWALMMGALVGGPLGAATSNLRQMRLPPLWQG
PPGESALIRFRALGCCAGAWVGAFFIPLDWAMPFQEWPLPAAEEAMDRRR
EQMPSRIWAPLYLRPFFLLLFLTLLQVDLHAATKIFLTEPAFLTGTARSS
YSSLSTSFSAIAAPSLYPSRNRLHLATSASRNTDEDNGDDLFPPPLLNRR
ELFVPALLALGSATLLLSNTIQDVHRYDEIHKQLFAMLAPASEAEEGRSG
GQEQQQQPRRLRVLEIGVGEGVNVKYYPSGCEVIGLDPHLKREALSVAQA
KAKARKIEFSLIEGAAESLPFPDRSFDAVVSTLVFCSVQSPPRALREVAR
VLKKGGRFLFIEHVWAGEREHPVLHAVQQAVDPLQALLADGCHLIRRTDE
LFVGEARQGGRGGGLFERVEKIERLEVDTQWPITVQVAGILVK*
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mRNA from alignment at chr3:1288495..1290615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04480.1 ID=NO03G04480.1|Name=NO03G04480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp|location=Sequence derived from alignment at chr3:1288495..1290615+ (Nannochloropsis oceanica)
ATGGAGGACGAGTGGTCCATGGTGGTGCTGTTAGAGGCTATCCTAGGCTT
GCTCACATATACCATTCCAGCCTTGTGGCAGTCTCGAGAAGCAGCCGTCT
TTTCCGCCGAGGCCGACGACCCCGACTACCTGCCTTTGCCCTCACGGCTC
TGGCGTCTCGCGGGCATCATATCCCTGGCTTCATACACCAGCACCATAAT
CACGCGCACCGAAGGTTTCTTAAATATAGGGACCGAGAAAGTGGGCGAGC
AAACGCTGCGGTTCTTGGGTGGAGTTATACTGGGAACCCCGTATTTCTAC
GTTTCTGCCGTAGCGCTTGGAGCACCTTGGAAAGACATGACAGATCGAAC
CGCAGCCTGGGCGCTGATGATGGGCGCGTTGGTTGGCGGGCCTTTGGGAG
CAGCTACATCTAACTTGAGACAAATGCGTCTGCCGCCATTGTGGCAGGGT
CCTCCGGGAGAGAGTGCCTTGATACGGTTTCGCGCGTTGGGATGCTGTGC
GGGGGCTTGGGTAGGCGCTTTTTTTATTCCTTTGGATTGGGCAATGCCTT
TTCAAGAGTGGCCTTTACCGTTAGTGGTGGGGGCAGTCGCTGGACACAAT
TTGGGAGCATTGGCTTTGTATTGTCATCGGCGGTGGTCGCCGCACGGGAA
GCTGCGAGAGCATAATGAATGAATAGATGGGCTGAGTGTAACTTAAAAAT
AAAGGCGTCGAAAAGTCAATGAACACTATGCAGATCACACAAACCCAAAC
AAAGAAAATTAAGAGAAGCGTTTGCATTCCCGTATCTCTCCTGTTCCTCT
CCTCACCACCTTTTTCCTCCTATTCCTAATGCTTCCCCACCAGGGCTGCC
GAAGAGGCCATGGATAGAAGAAGGGAGCAAATGCCGTCCAGAATCTGGGC
CCCTCTCTATCTCCGCCCCTTCTTCCTCCTCCTCTTCCTGACACTTCTAC
AAGTCGATCTCCACGCTGCAACCAAAATATTCTTGACTGAGCCTGCCTTT
TTGACTGGTACCGCCCGCTCTTCCTACTCGTCCTTGTCAACCTCCTTCTC
CGCCATTGCTGCCCCTTCCCTCTATCCCTCCCGAAACCGTTTACACCTCG
CCACAAGCGCGAGCCGTAACACCGACGAGGATAACGGCGACGACCTCTTT
CCTCCCCCCCTTCTCAACCGTCGCGAGCTCTTCGTCCCCGCCCTCCTCGC
CCTGGGGAGCGCTACCCTTCTCCTCTCCAACACAATCCAAGACGTACACC
GGTATGACGAAATCCATAAACAGCTGTTCGCCATGCTCGCACCCGCATCT
GAAGCGGAGGAGGGAAGAAGCGGCGGACAGGAGCAACAGCAACAGCCGCG
ACGTTTGCGTGTGTTGGAGATTGGGGTGGGAGAGGGCGTGAATGTGAAAT
ATTACCCGTCGGGATGTGAGGTGATCGGCTTGGATCCGCATTTAAAAAGG
GAGGCGTTGAGTGTCGCGCAGGTATAAAATTTAGTTAGAGAGGGAAGGGG
GAGGGGTAGAAGAAAAGTACATGGGCGAGCGTTATCTTAGAAAGATAATC
TGCCTCCTGGATGTTCTTTCGTGCGAGTCGACATATTGGCTTCATCTCTC
TTTACTCTTTGACCATACCGCGTGGCCCTCCCTCCCTCACTCCCTACTTC
ACTCTCTCTTTCATTTCTCCCTCTATCTCTACATAGGCAAAAGCAAAAGC
TCGCAAAATTGAGTTCTCCCTCATCGAAGGCGCTGCCGAGTCTCTCCCCT
TTCCCGACCGGAGCTTTGACGCCGTCGTCTCCACCCTTGTTTTCTGCTCC
GTGCAAAGCCCACCGCGAGCCCTAAGAGAGGTCGCGCGTGTCCTTAAAAA
AGGTGGGAGGTTTTTATTCATCGAGCATGTGTGGGCGGGAGAGAGAGAAC
ACCCGGTGCTGCACGCAGTCCAGCAGGCGGTCGATCCACTGCAGGCGCTC
TTGGCGGATGGATGTCATCTAATAAGACGTACGGATGAGCTGTTTGTGGG
CGAGGCGAGGCAAGGAGGGAGGGGGGGGGGGCTGTTTGAGCGGGTGGAAA
AGATTGAGAGGCTGGAGGTCGACACGCAATGGCCGATTACGGTGCAGGTG
GCGGGGATCTTGGTCAAATAA
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Coding sequence (CDS) from alignment at chr3:1288495..1290615+

>NO03G04480.1 ID=NO03G04480.1|Name=NO03G04480.1|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at chr3:1288495..1290615+ (Nannochloropsis oceanica)
ATGGAGGACGAGTGGTCCATGGTGGTGCTGTTAGAGGCTATCCTAGGCTT
GCTCACATATACCATTCCAGCCTTGTGGCAGTCTCGAGAAGCAGCCGTCT
TTTCCGCCGAGGCCGACGACCCCGACTACCTGCCTTTGCCCTCACGGCTC
TGGCGTCTCGCGGGCATCATATCCCTGGCTTCATACACCAGCACCATAAT
CACGCGCACCGAAGGTTTCTTAAATATAGGGACCGAGAAAGTGGGCGAGC
AAACGCTGCGGTTCTTGGGTGGAGTTATACTGGGAACCCCGTATTTCTAC
GTTTCTGCCGTAGCGCTTGGAGCACCTTGGAAAGACATGACAGATCGAAC
CGCAGCCTGGGCGCTGATGATGGGCGCGTTGGTTGGCGGGCCTTTGGGAG
CAGCTACATCTAACTTGAGACAAATGCGTCTGCCGCCATTGTGGCAGGGT
CCTCCGGGAGAGAGTGCCTTGATACGGTTTCGCGCGTTGGGATGCTGTGC
GGGGGCTTGGGTAGGCGCTTTTTTTATTCCTTTGGATTGGGCAATGCCTT
TTCAAGAGTGGCCTTTACCGGCTGCCGAAGAGGCCATGGATAGAAGAAGG
GAGCAAATGCCGTCCAGAATCTGGGCCCCTCTCTATCTCCGCCCCTTCTT
CCTCCTCCTCTTCCTGACACTTCTACAAGTCGATCTCCACGCTGCAACCA
AAATATTCTTGACTGAGCCTGCCTTTTTGACTGGTACCGCCCGCTCTTCC
TACTCGTCCTTGTCAACCTCCTTCTCCGCCATTGCTGCCCCTTCCCTCTA
TCCCTCCCGAAACCGTTTACACCTCGCCACAAGCGCGAGCCGTAACACCG
ACGAGGATAACGGCGACGACCTCTTTCCTCCCCCCCTTCTCAACCGTCGC
GAGCTCTTCGTCCCCGCCCTCCTCGCCCTGGGGAGCGCTACCCTTCTCCT
CTCCAACACAATCCAAGACGTACACCGGTATGACGAAATCCATAAACAGC
TGTTCGCCATGCTCGCACCCGCATCTGAAGCGGAGGAGGGAAGAAGCGGC
GGACAGGAGCAACAGCAACAGCCGCGACGTTTGCGTGTGTTGGAGATTGG
GGTGGGAGAGGGCGTGAATGTGAAATATTACCCGTCGGGATGTGAGGTGA
TCGGCTTGGATCCGCATTTAAAAAGGGAGGCGTTGAGTGTCGCGCAGGCA
AAAGCAAAAGCTCGCAAAATTGAGTTCTCCCTCATCGAAGGCGCTGCCGA
GTCTCTCCCCTTTCCCGACCGGAGCTTTGACGCCGTCGTCTCCACCCTTG
TTTTCTGCTCCGTGCAAAGCCCACCGCGAGCCCTAAGAGAGGTCGCGCGT
GTCCTTAAAAAAGGTGGGAGGTTTTTATTCATCGAGCATGTGTGGGCGGG
AGAGAGAGAACACCCGGTGCTGCACGCAGTCCAGCAGGCGGTCGATCCAC
TGCAGGCGCTCTTGGCGGATGGATGTCATCTAATAAGACGTACGGATGAG
CTGTTTGTGGGCGAGGCGAGGCAAGGAGGGAGGGGGGGGGGGCTGTTTGA
GCGGGTGGAAAAGATTGAGAGGCTGGAGGTCGACACGCAATGGCCGATTA
CGGTGCAGGTGGCGGGGATCTTGGTCAAATAA
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Synonyms
Publications