NO03G04440.4, NO03G04440.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04440.4
Unique NameNO03G04440.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1727
Alignment locationchr3:1276858..1278683 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1276858..1278683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04440.4 vs.
Match: EWM29838.1 (sorting and assembly machinery component 50 putative [Nannochloropsis gaditana])

HSP 1 Score: 639.4 bits (1648), Expect = 7.000e-180
Identity = 312/381 (81.89%), Postives = 345/381 (90.55%), Query Frame = 0 
Query:    1 MQEAASQNPGETDLLIKVAEKGIFTAYTGTSFTRDDINFEASGSLRNPTGYAESVEGTYSRSRLGNRSVRVNLSKPRVRGANVRLDCELHEDTLNYERTSSLREKVQALAFHLTTHNRRHRLTYEMALRDILPRRHLSTPFAYDASLSIMREATPSLKSAFKYKFIDDRRNDGVLPTGGTFFSGLLELAGLGVGDVAYVKAEVAGATHKPLGVGGICAHLSGVVGVVRPTSWRMREGVGEEGVPRTRFSDRYVLGGLQTMRGFGYSGLGPRAARKEGGCLKGDSLGGDLKYVATAALTMPVPLPLLDKFGLRWQVFADAGNLLPWSAPLASMLSDMRLSCGTGLAMSLGAARVELNYSLPFKRKGSDLEQRWQFGLAAHIG 382
            MQEAAS+ PGETDL IKV EKG+F+AYTGTSFTRDDINFEASGSLRNPTG+AE++EGTYSRSR GNRS++VNL KPRVRG N R DC++HEDTLN+ERTSSL EKVQA+AFHLTTHNRRHRL+YE+ALRDILPRRHLSTPFAYDASLSIMREATPSLKS F+YKF DDR++D VLP+ GTFFSGLLELAG+GVGDVAYVKAEVAGA HKPLG  G+ AHLSG VGVVRPT WR REG G E  PRTRFSDRY+LGGLQT+RGFGYSG+GPRA ++EGG LKGDSLGGD KYVAT ALT P+PLPLLDKFGLRW VFADAGNLLPWSAPL SMLSDMR++CGTGLA+SLG ARVE+NYS+P K++  D EQRWQFGLAAHIG
Sbjct:   66 MQEAASKAPGETDLHIKVIEKGVFSAYTGTSFTRDDINFEASGSLRNPTGHAETLEGTYSRSRQGNRSLKVNLGKPRVRGLNTRFDCQIHEDTLNHERTSSLSEKVQAVAFHLTTHNRRHRLSYELALRDILPRRHLSTPFAYDASLSIMREATPSLKSVFRYKFTDDRQDDSVLPSSGTFFSGLLELAGVGVGDVAYVKAEVAGAAHKPLGATGLSAHLSGSVGVVRPTGWRAREG-GVEEAPRTRFSDRYMLGGLQTLRGFGYSGVGPRAPQREGGALKGDSLGGDFKYVATVALTAPLPLPLLDKFGLRWHVFADAGNLLPWSAPLTSMLSDMRVACGTGLAISLGMARVEMNYSVPVKKEMKDFEQRWQFGLAAHIG 445
The following BLAST results are available for this feature:
BLAST of NO03G04440.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29838.17.000e-18081.89sorting and assembly machinery component 50 putati... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04440NO03G04440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04440.4NO03G04440.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04440.4.cds1NO03G04440.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04440.4 ID=NO03G04440.4|Name=NO03G04440.4|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
AGGAAGCTTGGCAAAGACTTGTTGAAGCTGTTGCTATTGGGCCTGGGGAA
GGATGGTGCGCGCAGACACGCCCTTGCGCATTAACCGCGTCGTTGTTGAA
GGTAACAAGCGCACGGACCCATCGGTGATTGAGGATGAGTTGCAGGAGGC
CTACCGGGCCAGCACGGTAGAAGGCGTCCATCGAGGGCTGCAGAGGTACG
TGTTCAGATTATTTTTAAGGGTGGTTGGACGGACAGAGACGTCGCTTCGG
CTTGAGGCGCCTTCGTGCTCACTTCATCTTGCATGTAAGTCCAGAGCGAG
ACACTCATCGCCTGGGCTTGAGTGTAAGCAAGAACGGATGGCAAGCAGCC
ACTCTACGAGGTCATCATCTCTACCCTCCGTCATCCCCCAAACTTTCAAA
CCTCCTCACACCGCCCAACAGGGCAACCCAAAGCCTGCAAAGTCTTGGGA
TCTTCCACGGCATCGACATTCAAATGCAAGAAGCCGCTAGCCAAAACCCG
GGGGAAACCGACCTCCTTATCAAAGTAGCCGAAAAAGGCATCTTCACTGC
CTACACAGGCACAAGCTTCACCCGCGACGACATCAATTTCGAAGCCTCCG
GCTCCCTCCGCAACCCCACCGGGTACGCCGAAAGCGTCGAAGGCACCTAT
TCCCGTTCTCGCCTTGGCAATCGTTCTGTTCGTGTAAACCTTAGCAAGCC
CCGCGTCCGTGGCGCCAACGTCCGTCTCGACTGCGAACTTCACGAAGATA
CGCTCAACTACGAACGCACTTCCTCGCTGCGCGAGAAAGTTCAAGCCCTG
GCATTTCATCTCACTACACACAATCGTCGCCATCGCCTCACGTACGAAAT
GGCCTTGAGAGACATCCTCCCGAGGAGGCACCTTTCTACCCCCTTTGCCT
ACGACGCTTCTCTTTCCATAATGCGAGAAGCCACCCCCTCCCTCAAATCT
GCGTTCAAATACAAATTTATCGATGACCGGCGGAATGATGGTGTTTTACC
CACAGGCGGGACCTTTTTTTCTGGGTTGTTGGAGCTAGCGGGACTGGGGG
TGGGAGATGTGGCGTATGTCAAAGCCGAAGTGGCGGGGGCCACTCATAAG
CCTCTCGGAGTCGGAGGGATCTGTGCGCATTTATCAGGCGTAGTGGGTGT
GGTGCGGCCGACGAGTTGGAGGATGAGGGAGGGAGTGGGGGAGGAAGGGG
TGCCAAGGACGAGGTTTAGTGACCGGTATGTGTTGGGGGGACTACAGACA
ATGAGAGGTTTTGGGTACTCTGGGCTGGGGCCACGGGCGGCGAGGAAGGA
GGGCGGATGTTTGAAGGGAGACTCTCTTGGCGGTGATTTGAAGTATGTGG
CAACGGCAGCATTGACGATGCCGGTACCTCTGCCGCTTCTCGATAAGTTT
GGGTTGAGGTGGCAAGTGTTCGCGGATGCCGGTAATTTGTTGCCCTGGTC
CGCGCCCTTGGCCAGCATGCTGAGTGATATGCGATTGTCGTGTGGGACGG
GCTTGGCGATGAGCTTGGGTGCTGCAAGGGTGGAATTGAACTATTCGTTA
CCGTTCAAGAGGAAGGGAAGTGACCTCGAGCAACGGTGGCAGTTCGGCTT
GGCGGCGCATATCGGGTAGATAGCAGAGGAGAGATGGACGAGAGATAAAT
AGAAAAATTGAGGTAGAAAAGCGCACGCGCACTCATCAGCGATGCCATAA
AGTAAAAATATGGACGGACAAAGCAGG
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protein sequence of NO03G04440.4

>NO03G04440.4-protein ID=NO03G04440.4-protein|Name=NO03G04440.4|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MQEAASQNPGETDLLIKVAEKGIFTAYTGTSFTRDDINFEASGSLRNPTG
YAESVEGTYSRSRLGNRSVRVNLSKPRVRGANVRLDCELHEDTLNYERTS
SLREKVQALAFHLTTHNRRHRLTYEMALRDILPRRHLSTPFAYDASLSIM
REATPSLKSAFKYKFIDDRRNDGVLPTGGTFFSGLLELAGLGVGDVAYVK
AEVAGATHKPLGVGGICAHLSGVVGVVRPTSWRMREGVGEEGVPRTRFSD
RYVLGGLQTMRGFGYSGLGPRAARKEGGCLKGDSLGGDLKYVATAALTMP
VPLPLLDKFGLRWQVFADAGNLLPWSAPLASMLSDMRLSCGTGLAMSLGA
ARVELNYSLPFKRKGSDLEQRWQFGLAAHIG*
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mRNA from alignment at chr3:1276858..1278683+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04440.4 ID=NO03G04440.4|Name=NO03G04440.4|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp|location=Sequence derived from alignment at chr3:1276858..1278683+ (Nannochloropsis oceanica)
AGGAAGCTTGGCAAAGACTTGTTGAAGCTGTTGCTATTGGGCCTGGGGAA
GGATGGTGCGCGCAGACACGCCCTTGCGCATTAACCGCGTCGTTGTTGAA
GGTCAGTTGGATGGGAGGGCTTGGAGGGGGAGGCTATAACCGCTGTAGAC
ACACTTCACACATTGGCGCAGTTCACTTCCGCACCACACCACAACTACAG
GTAACAAGCGCACGGACCCATCGGTGATTGAGGATGAGTTGCAGGAGGCC
TACCGGGCCAGCACGGTAGAAGGCGTCCATCGAGGGCTGCAGAGGTACGT
GTTCAGATTATTTTTAAGGGTGGTTGGACGGACAGAGACGTCGCTTCGGC
TTGAGGCGCCTTCGTGCTCACTTCATCTTGCATGTAAGTCCAGAGCGAGA
CACTCATCGCCTGGGCTTGAGTGTAAGCAAGAACGGATGGCAAGCAGCCA
CTCTACGAGGTCATCATCTCTACCCTCCGTCATCCCCCAAACTTTCAAAC
CTCCTCACACCGCCCAACAGGGCAACCCAAAGCCTGCAAAGTCTTGGGAT
CTTCCACGGCATCGACATTCAAATGCAAGAAGCCGCTAGCCAAAACCCGG
GGGAAACCGACCTCCTTATCAAAGTAGCCGAAAAAGGCATCTTCACTGCC
TACACAGGCACAAGCTTCACCCGCGACGACATCAATTTCGAAGCCTCCGG
CTCCCTCCGCAACCCCACCGGGTACGCCGAAAGCGTCGAAGGCACCTATT
CCCGTTCTCGCCTTGGCAATCGTTCTGTTCGTGTAAACCTTAGCAAGCCC
CGCGTCCGTGGCGCCAACGTCCGTCTCGACTGCGAACTTCACGAAGATAC
GCTCAACTACGAACGCACTTCCTCGCTGCGCGAGAAAGTTCAAGCCCTGG
CATTTCATCTCACTACACACAATCGTCGCCATCGCCTCACGTACGAAATG
GCCTTGAGAGACATCCTCCCGAGGAGGCACCTTTCTACCCCCTTTGCCTA
CGACGCTTCTCTTTCCATAATGCGAGAAGCCACCCCCTCCCTCAAATCTG
CGTTCAAATACAAATTTATCGATGACCGGCGGAATGATGGTGTTTTACCC
ACAGGCGGGACCTTTTTTTCTGGGTTGTTGGAGCTAGCGGGACTGGGGGT
GGGAGATGTGGCGTATGTCAAAGCCGAAGTGGCGGGGGCCACTCATAAGC
CTCTCGGAGTCGGAGGGATCTGTGCGCATTTATCAGGCGTAGTGGGTGTG
GTGCGGCCGACGAGTTGGAGGATGAGGGAGGGAGTGGGGGAGGAAGGGGT
GCCAAGGACGAGGTTTAGTGACCGGTATGTGTTGGGGGGACTACAGACAA
TGAGAGGTTTTGGGTACTCTGGGCTGGGGCCACGGGCGGCGAGGAAGGAG
GGCGGATGTTTGAAGGGAGACTCTCTTGGCGGTGATTTGAAGTATGTGGC
AACGGCAGCATTGACGATGCCGGTACCTCTGCCGCTTCTCGATAAGTTTG
GGTTGAGGTGGCAAGTGTTCGCGGATGCCGGTAATTTGTTGCCCTGGTCC
GCGCCCTTGGCCAGCATGCTGAGTGATATGCGATTGTCGTGTGGGACGGG
CTTGGCGATGAGCTTGGGTGCTGCAAGGGTGGAATTGAACTATTCGTTAC
CGTTCAAGAGGAAGGGAAGTGACCTCGAGCAACGGTGGCAGTTCGGCTTG
GCGGCGCATATCGGGTAGATAGCAGAGGAGAGATGGACGAGAGATAAATA
GAAAAATTGAGGTAGAAAAGCGCACGCGCACTCATCAGCGATGCCATAAA
GTAAAAATATGGACGGACAAAGCAGG
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Coding sequence (CDS) from alignment at chr3:1276858..1278683+

>NO03G04440.4 ID=NO03G04440.4|Name=NO03G04440.4|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr3:1276858..1278683+ (Nannochloropsis oceanica)
ATGCAAGAAGCCGCTAGCCAAAACCCGGGGGAAACCGACCTCCTTATCAA
AGTAGCCGAAAAAGGCATCTTCACTGCCTACACAGGCACAAGCTTCACCC
GCGACGACATCAATTTCGAAGCCTCCGGCTCCCTCCGCAACCCCACCGGG
TACGCCGAAAGCGTCGAAGGCACCTATTCCCGTTCTCGCCTTGGCAATCG
TTCTGTTCGTGTAAACCTTAGCAAGCCCCGCGTCCGTGGCGCCAACGTCC
GTCTCGACTGCGAACTTCACGAAGATACGCTCAACTACGAACGCACTTCC
TCGCTGCGCGAGAAAGTTCAAGCCCTGGCATTTCATCTCACTACACACAA
TCGTCGCCATCGCCTCACGTACGAAATGGCCTTGAGAGACATCCTCCCGA
GGAGGCACCTTTCTACCCCCTTTGCCTACGACGCTTCTCTTTCCATAATG
CGAGAAGCCACCCCCTCCCTCAAATCTGCGTTCAAATACAAATTTATCGA
TGACCGGCGGAATGATGGTGTTTTACCCACAGGCGGGACCTTTTTTTCTG
GGTTGTTGGAGCTAGCGGGACTGGGGGTGGGAGATGTGGCGTATGTCAAA
GCCGAAGTGGCGGGGGCCACTCATAAGCCTCTCGGAGTCGGAGGGATCTG
TGCGCATTTATCAGGCGTAGTGGGTGTGGTGCGGCCGACGAGTTGGAGGA
TGAGGGAGGGAGTGGGGGAGGAAGGGGTGCCAAGGACGAGGTTTAGTGAC
CGGTATGTGTTGGGGGGACTACAGACAATGAGAGGTTTTGGGTACTCTGG
GCTGGGGCCACGGGCGGCGAGGAAGGAGGGCGGATGTTTGAAGGGAGACT
CTCTTGGCGGTGATTTGAAGTATGTGGCAACGGCAGCATTGACGATGCCG
GTACCTCTGCCGCTTCTCGATAAGTTTGGGTTGAGGTGGCAAGTGTTCGC
GGATGCCGGTAATTTGTTGCCCTGGTCCGCGCCCTTGGCCAGCATGCTGA
GTGATATGCGATTGTCGTGTGGGACGGGCTTGGCGATGAGCTTGGGTGCT
GCAAGGGTGGAATTGAACTATTCGTTACCGTTCAAGAGGAAGGGAAGTGA
CCTCGAGCAACGGTGGCAGTTCGGCTTGGCGGCGCATATCGGGTAG
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Synonyms
Publications