NO03G04440.2, NO03G04440.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04440.2
Unique NameNO03G04440.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1501
Alignment locationchr3:1276858..1278683 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1276858..1278683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G04440.2 vs.
Match: EWM29838.1 (sorting and assembly machinery component 50 putative [Nannochloropsis gaditana])

HSP 1 Score: 743.8 bits (1919), Expect = 3.100e-211
Identity = 365/446 (81.84%), Postives = 405/446 (90.81%), Query Frame = 0 
Query:    1 MVRADTPLRINRVVVEGNKRTDPSVIEDELQEAYRASTVEGVHRGLQRATQSLQSLGIFHGIDIQMQEAASQNPGETDLLIKVAEKGIFTAYTGTSFTRDDINFEASGSLRNPTGYAESVEGTYSRSRLGNRSVRVNLSKPRVRGANVRLDCELHEDTLNYERTSSLREKVQALAFHLTTHNRRHRLTYEMALRDILPRRHLSTPFAYDASLSIMREATPSLKSAFKYKFIDDRRNDGVLPTGGTFFSGLLELAGLGVGDVAYVKAEVAGATHKPLGVGGICAHLSGVVGVVRPTSWRMREGVGEEGVPRTRFSDRYVLGGLQTMRGFGYSGLGPRAARKEGGCLKGDSLGGDLKYVATAALTMPVPLPLLDKFGLRWQVFADAGNLLPWSAPLASMLSDMRLSCGTGLAMSLGAARVELNYSLPFKRKGSDLEQRWQFGLAAHIG 447
            MVRADTPLRI RV VEGNKRT+PSVIEDELQ+AYRASTV+GVHRGLQ+A  +LQ+LGIF G+DIQMQEAAS+ PGETDL IKV EKG+F+AYTGTSFTRDDINFEASGSLRNPTG+AE++EGTYSRSR GNRS++VNL KPRVRG N R DC++HEDTLN+ERTSSL EKVQA+AFHLTTHNRRHRL+YE+ALRDILPRRHLSTPFAYDASLSIMREATPSLKS F+YKF DDR++D VLP+ GTFFSGLLELAG+GVGDVAYVKAEVAGA HKPLG  G+ AHLSG VGVVRPT WR REG G E  PRTRFSDRY+LGGLQT+RGFGYSG+GPRA ++EGG LKGDSLGGD KYVAT ALT P+PLPLLDKFGLRW VFADAGNLLPWSAPL SMLSDMR++CGTGLA+SLG ARVE+NYS+P K++  D EQRWQFGLAAHIG
Sbjct:    1 MVRADTPLRIGRVFVEGNKRTEPSVIEDELQDAYRASTVQGVHRGLQKANYNLQNLGIFKGVDIQMQEAASKAPGETDLHIKVIEKGVFSAYTGTSFTRDDINFEASGSLRNPTGHAETLEGTYSRSRQGNRSLKVNLGKPRVRGLNTRFDCQIHEDTLNHERTSSLSEKVQAVAFHLTTHNRRHRLSYELALRDILPRRHLSTPFAYDASLSIMREATPSLKSVFRYKFTDDRQDDSVLPSSGTFFSGLLELAGVGVGDVAYVKAEVAGAAHKPLGATGLSAHLSGSVGVVRPTGWRAREG-GVEEAPRTRFSDRYMLGGLQTLRGFGYSGVGPRAPQREGGALKGDSLGGDFKYVATVALTAPLPLPLLDKFGLRWHVFADAGNLLPWSAPLTSMLSDMRVACGTGLAISLGMARVEMNYSVPVKKEMKDFEQRWQFGLAAHIG 445
The following BLAST results are available for this feature:
BLAST of NO03G04440.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29838.13.100e-21181.84sorting and assembly machinery component 50 putati... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04440NO03G04440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04440.2NO03G04440.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04440.2.cds1NO03G04440.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04440.2.cds2NO03G04440.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04440.2.cds3NO03G04440.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04440.2 ID=NO03G04440.2|Name=NO03G04440.2|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp
AGGAAGCTTGGCAAAGACTTGTTGAAGCTGTTGCTATTGGGCCTGGGGAA
GGATGGTGCGCGCAGACACGCCCTTGCGCATTAACCGCGTCGTTGTTGAA
GGTAACAAGCGCACGGACCCATCGGTGATTGAGGATGAGTTGCAGGAGGC
CTACCGGGCCAGCACGGTAGAAGGCGTCCATCGAGGGCTGCAGAGGGCAA
CCCAAAGCCTGCAAAGTCTTGGGATCTTCCACGGCATCGACATTCAAATG
CAAGAAGCCGCTAGCCAAAACCCGGGGGAAACCGACCTCCTTATCAAAGT
AGCCGAAAAAGGCATCTTCACTGCCTACACAGGCACAAGCTTCACCCGCG
ACGACATCAATTTCGAAGCCTCCGGCTCCCTCCGCAACCCCACCGGGTAC
GCCGAAAGCGTCGAAGGCACCTATTCCCGTTCTCGCCTTGGCAATCGTTC
TGTTCGTGTAAACCTTAGCAAGCCCCGCGTCCGTGGCGCCAACGTCCGTC
TCGACTGCGAACTTCACGAAGATACGCTCAACTACGAACGCACTTCCTCG
CTGCGCGAGAAAGTTCAAGCCCTGGCATTTCATCTCACTACACACAATCG
TCGCCATCGCCTCACGTACGAAATGGCCTTGAGAGACATCCTCCCGAGGA
GGCACCTTTCTACCCCCTTTGCCTACGACGCTTCTCTTTCCATAATGCGA
GAAGCCACCCCCTCCCTCAAATCTGCGTTCAAATACAAATTTATCGATGA
CCGGCGGAATGATGGTGTTTTACCCACAGGCGGGACCTTTTTTTCTGGGT
TGTTGGAGCTAGCGGGACTGGGGGTGGGAGATGTGGCGTATGTCAAAGCC
GAAGTGGCGGGGGCCACTCATAAGCCTCTCGGAGTCGGAGGGATCTGTGC
GCATTTATCAGGCGTAGTGGGTGTGGTGCGGCCGACGAGTTGGAGGATGA
GGGAGGGAGTGGGGGAGGAAGGGGTGCCAAGGACGAGGTTTAGTGACCGG
TATGTGTTGGGGGGACTACAGACAATGAGAGGTTTTGGGTACTCTGGGCT
GGGGCCACGGGCGGCGAGGAAGGAGGGCGGATGTTTGAAGGGAGACTCTC
TTGGCGGTGATTTGAAGTATGTGGCAACGGCAGCATTGACGATGCCGGTA
CCTCTGCCGCTTCTCGATAAGTTTGGGTTGAGGTGGCAAGTGTTCGCGGA
TGCCGGTAATTTGTTGCCCTGGTCCGCGCCCTTGGCCAGCATGCTGAGTG
ATATGCGATTGTCGTGTGGGACGGGCTTGGCGATGAGCTTGGGTGCTGCA
AGGGTGGAATTGAACTATTCGTTACCGTTCAAGAGGAAGGGAAGTGACCT
CGAGCAACGGTGGCAGTTCGGCTTGGCGGCGCATATCGGGTAGATAGCAG
AGGAGAGATGGACGAGAGATAAATAGAAAAATTGAGGTAGAAAAGCGCAC
GCGCACTCATCAGCGATGCCATAAAGTAAAAATATGGACGGACAAAGCAG
G
back to top

protein sequence of NO03G04440.2

>NO03G04440.2-protein ID=NO03G04440.2-protein|Name=NO03G04440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MVRADTPLRINRVVVEGNKRTDPSVIEDELQEAYRASTVEGVHRGLQRAT
QSLQSLGIFHGIDIQMQEAASQNPGETDLLIKVAEKGIFTAYTGTSFTRD
DINFEASGSLRNPTGYAESVEGTYSRSRLGNRSVRVNLSKPRVRGANVRL
DCELHEDTLNYERTSSLREKVQALAFHLTTHNRRHRLTYEMALRDILPRR
HLSTPFAYDASLSIMREATPSLKSAFKYKFIDDRRNDGVLPTGGTFFSGL
LELAGLGVGDVAYVKAEVAGATHKPLGVGGICAHLSGVVGVVRPTSWRMR
EGVGEEGVPRTRFSDRYVLGGLQTMRGFGYSGLGPRAARKEGGCLKGDSL
GGDLKYVATAALTMPVPLPLLDKFGLRWQVFADAGNLLPWSAPLASMLSD
MRLSCGTGLAMSLGAARVELNYSLPFKRKGSDLEQRWQFGLAAHIG*
back to top

mRNA from alignment at chr3:1276858..1278683+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04440.2 ID=NO03G04440.2|Name=NO03G04440.2|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp|location=Sequence derived from alignment at chr3:1276858..1278683+ (Nannochloropsis oceanica)
AGGAAGCTTGGCAAAGACTTGTTGAAGCTGTTGCTATTGGGCCTGGGGAA
GGATGGTGCGCGCAGACACGCCCTTGCGCATTAACCGCGTCGTTGTTGAA
GGTCAGTTGGATGGGAGGGCTTGGAGGGGGAGGCTATAACCGCTGTAGAC
ACACTTCACACATTGGCGCAGTTCACTTCCGCACCACACCACAACTACAG
GTAACAAGCGCACGGACCCATCGGTGATTGAGGATGAGTTGCAGGAGGCC
TACCGGGCCAGCACGGTAGAAGGCGTCCATCGAGGGCTGCAGAGGTACGT
GTTCAGATTATTTTTAAGGGTGGTTGGACGGACAGAGACGTCGCTTCGGC
TTGAGGCGCCTTCGTGCTCACTTCATCTTGCATGTAAGTCCAGAGCGAGA
CACTCATCGCCTGGGCTTGAGTGTAAGCAAGAACGGATGGCAAGCAGCCA
CTCTACGAGGTCATCATCTCTACCCTCCGTCATCCCCCAAACTTTCAAAC
CTCCTCACACCGCCCAACAGGGCAACCCAAAGCCTGCAAAGTCTTGGGAT
CTTCCACGGCATCGACATTCAAATGCAAGAAGCCGCTAGCCAAAACCCGG
GGGAAACCGACCTCCTTATCAAAGTAGCCGAAAAAGGCATCTTCACTGCC
TACACAGGCACAAGCTTCACCCGCGACGACATCAATTTCGAAGCCTCCGG
CTCCCTCCGCAACCCCACCGGGTACGCCGAAAGCGTCGAAGGCACCTATT
CCCGTTCTCGCCTTGGCAATCGTTCTGTTCGTGTAAACCTTAGCAAGCCC
CGCGTCCGTGGCGCCAACGTCCGTCTCGACTGCGAACTTCACGAAGATAC
GCTCAACTACGAACGCACTTCCTCGCTGCGCGAGAAAGTTCAAGCCCTGG
CATTTCATCTCACTACACACAATCGTCGCCATCGCCTCACGTACGAAATG
GCCTTGAGAGACATCCTCCCGAGGAGGCACCTTTCTACCCCCTTTGCCTA
CGACGCTTCTCTTTCCATAATGCGAGAAGCCACCCCCTCCCTCAAATCTG
CGTTCAAATACAAATTTATCGATGACCGGCGGAATGATGGTGTTTTACCC
ACAGGCGGGACCTTTTTTTCTGGGTTGTTGGAGCTAGCGGGACTGGGGGT
GGGAGATGTGGCGTATGTCAAAGCCGAAGTGGCGGGGGCCACTCATAAGC
CTCTCGGAGTCGGAGGGATCTGTGCGCATTTATCAGGCGTAGTGGGTGTG
GTGCGGCCGACGAGTTGGAGGATGAGGGAGGGAGTGGGGGAGGAAGGGGT
GCCAAGGACGAGGTTTAGTGACCGGTATGTGTTGGGGGGACTACAGACAA
TGAGAGGTTTTGGGTACTCTGGGCTGGGGCCACGGGCGGCGAGGAAGGAG
GGCGGATGTTTGAAGGGAGACTCTCTTGGCGGTGATTTGAAGTATGTGGC
AACGGCAGCATTGACGATGCCGGTACCTCTGCCGCTTCTCGATAAGTTTG
GGTTGAGGTGGCAAGTGTTCGCGGATGCCGGTAATTTGTTGCCCTGGTCC
GCGCCCTTGGCCAGCATGCTGAGTGATATGCGATTGTCGTGTGGGACGGG
CTTGGCGATGAGCTTGGGTGCTGCAAGGGTGGAATTGAACTATTCGTTAC
CGTTCAAGAGGAAGGGAAGTGACCTCGAGCAACGGTGGCAGTTCGGCTTG
GCGGCGCATATCGGGTAGATAGCAGAGGAGAGATGGACGAGAGATAAATA
GAAAAATTGAGGTAGAAAAGCGCACGCGCACTCATCAGCGATGCCATAAA
GTAAAAATATGGACGGACAAAGCAGG
back to top

Coding sequence (CDS) from alignment at chr3:1276858..1278683+

>NO03G04440.2 ID=NO03G04440.2|Name=NO03G04440.2|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr3:1276858..1278683+ (Nannochloropsis oceanica)
ATGGTGCGCGCAGACACGCCCTTGCGCATTAACCGCGTCGTTGTTGAAGG
TAACAAGCGCACGGACCCATCGGTGATTGAGGATGAGTTGCAGGAGGCCT
ACCGGGCCAGCACGGTAGAAGGCGTCCATCGAGGGCTGCAGAGGGCAACC
CAAAGCCTGCAAAGTCTTGGGATCTTCCACGGCATCGACATTCAAATGCA
AGAAGCCGCTAGCCAAAACCCGGGGGAAACCGACCTCCTTATCAAAGTAG
CCGAAAAAGGCATCTTCACTGCCTACACAGGCACAAGCTTCACCCGCGAC
GACATCAATTTCGAAGCCTCCGGCTCCCTCCGCAACCCCACCGGGTACGC
CGAAAGCGTCGAAGGCACCTATTCCCGTTCTCGCCTTGGCAATCGTTCTG
TTCGTGTAAACCTTAGCAAGCCCCGCGTCCGTGGCGCCAACGTCCGTCTC
GACTGCGAACTTCACGAAGATACGCTCAACTACGAACGCACTTCCTCGCT
GCGCGAGAAAGTTCAAGCCCTGGCATTTCATCTCACTACACACAATCGTC
GCCATCGCCTCACGTACGAAATGGCCTTGAGAGACATCCTCCCGAGGAGG
CACCTTTCTACCCCCTTTGCCTACGACGCTTCTCTTTCCATAATGCGAGA
AGCCACCCCCTCCCTCAAATCTGCGTTCAAATACAAATTTATCGATGACC
GGCGGAATGATGGTGTTTTACCCACAGGCGGGACCTTTTTTTCTGGGTTG
TTGGAGCTAGCGGGACTGGGGGTGGGAGATGTGGCGTATGTCAAAGCCGA
AGTGGCGGGGGCCACTCATAAGCCTCTCGGAGTCGGAGGGATCTGTGCGC
ATTTATCAGGCGTAGTGGGTGTGGTGCGGCCGACGAGTTGGAGGATGAGG
GAGGGAGTGGGGGAGGAAGGGGTGCCAAGGACGAGGTTTAGTGACCGGTA
TGTGTTGGGGGGACTACAGACAATGAGAGGTTTTGGGTACTCTGGGCTGG
GGCCACGGGCGGCGAGGAAGGAGGGCGGATGTTTGAAGGGAGACTCTCTT
GGCGGTGATTTGAAGTATGTGGCAACGGCAGCATTGACGATGCCGGTACC
TCTGCCGCTTCTCGATAAGTTTGGGTTGAGGTGGCAAGTGTTCGCGGATG
CCGGTAATTTGTTGCCCTGGTCCGCGCCCTTGGCCAGCATGCTGAGTGAT
ATGCGATTGTCGTGTGGGACGGGCTTGGCGATGAGCTTGGGTGCTGCAAG
GGTGGAATTGAACTATTCGTTACCGTTCAAGAGGAAGGGAAGTGACCTCG
AGCAACGGTGGCAGTTCGGCTTGGCGGCGCATATCGGGTAG
back to top
Synonyms
Publications