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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1260065..1262955 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G04370.1 vs.
Match: EWM29813.1 (transaldolase [Nannochloropsis gaditana]) HSP 1 Score: 1148.7 bits (2970), Expect = 0.000e+0 Identity = 585/655 (89.31%), Postives = 614/655 (93.74%), Query Frame = 0
Query: 1 MSAPKKTKHVDQFTALGELTTLVCDTGDVEAIKRLKPTDATTNPSLIYKAASQPQYLPLVQDAVAYGKALSASKSDSERLAATMDRLAVNFGAEITKIVPGYVSTEVDARLSYDTGETLKRGRRIIEMYKELGIDKSRILIKIASTWEGIKAAEVLEKEGVATNLTLLFSLAQAAAAAEAGATLISPFVGRILDWWKKETGKGYADPEEDPGVQSVRQIYGYYKKFGYDTIVMGASFRNKGEITALAGCDRLTISPGLLDELKECHEPLPRVLDPRSGSSFYEGETIPVDEKAFRLALNNDPMATAKLAEGIRGFAADIEKLEAMIAKMLVPPPDQLSQLAAFTTIVCDTGDVETIGRLKPTDATTNPSLIFKAASLPQYQPLVDSAIAAAKAVADAGMSQKERLDLILDRLAVNFGAEITKIVPGYVSTEVDARLSYDTEQTLARAKRIVGMYKDLGIDKSRILIKIASTWEGIKAAEVLEKEGVKTNLTLLFSLAQAVAAAEAGATLISPFVGRILDWWKKETGKRYADLEEDPGVQSVRQIYGYYKKFGYDTIVMGASFRNKGEITALAGCDRLTISPGLLDELKACCDPLPRMLEPSKAAAVYGGPKLRVDEKAFRLMMNGDAMATDKLAEGIRGFAADIEKLEAMIAKKL 656
MSAPKK KHVDQFTALGELTTLVCDTGDVEAIKRLKPTDATTNPSLI+KAAS PQYL LV DAVAYGKAL AS SDSERLAATMDRLAVNFGAEITKIVPGYVSTEVDARLSYD ETLKR RRII MYKELGI K RILIKIASTWEGIKAAE LE+EGV TNLTLLFSLAQA AAAEAGATL+SPFVGRILDWWKKETGK +AD EEDPGVQSVRQIYGYYKK+GY+TIVMGASFRNKGEITALAGCDRLTISPGLLDELK+CH+PLPRVL+P +GSSFY+GE I VDEK+FRLA+N D MATAKLAEGIRGFAADIEKLEAMIAKMLVPP DQ SQLA FTT+VCDTGDVE I RLKPTDATTNPSLIFKAASLPQY+PLVDSAIAA KAVADAGMS KERLDLILDRLAVNFGAEITKIVPGYVSTEVDARLS+DT+QTLARA+RI+GMYK+LGI K RILIKIASTWEGIKAAE LE+EGVKTNLTLLFSLAQAVAAAEAGATL+SPFVGRILDWWKKETGK +AD EEDPGVQSVRQIYGYYKK+GY+TIVMGASFRNKGEITALAGCDRLTISPGLLDELK C DPLPR+LE SKAAAVYGGPKL ++EKAFR MN DAMATDKLAEGIRGFAADIEKLEAMIAK+L
Sbjct: 1 MSAPKKAKHVDQFTALGELTTLVCDTGDVEAIKRLKPTDATTNPSLIFKAASLPQYLSLVNDAVAYGKALPASHSDSERLAATMDRLAVNFGAEITKIVPGYVSTEVDARLSYDKDETLKRARRIIGMYKELGISKERILIKIASTWEGIKAAEALEQEGVKTNLTLLFSLAQAVAAAEAGATLVSPFVGRILDWWKKETGKTFADAEEDPGVQSVRQIYGYYKKYGYETIVMGASFRNKGEITALAGCDRLTISPGLLDELKDCHDPLPRVLEPENGSSFYDGERIRVDEKSFRLAMNADAMATAKLAEGIRGFAADIEKLEAMIAKMLVPPSDQFSQLAVFTTLVCDTGDVEAIKRLKPTDATTNPSLIFKAASLPQYKPLVDSAIAAGKAVADAGMSLKERLDLILDRLAVNFGAEITKIVPGYVSTEVDARLSFDTDQTLARARRIIGMYKELGISKERILIKIASTWEGIKAAEALEQEGVKTNLTLLFSLAQAVAAAEAGATLVSPFVGRILDWWKKETGKTFADAEEDPGVQSVRQIYGYYKKYGYETIVMGASFRNKGEITALAGCDRLTISPGLLDELKDCHDPLPRVLEASKAAAVYGGPKLHMNEKAFRFAMNADAMATDKLAEGIRGFAADIEKLEAMIAKRL 655
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G04370.1 ID=NO03G04370.1|Name=NO03G04370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2891bp CGACGCCGCAAGCTCCCGGTCGTTTTGCGTGTTAATTGGTGGATCTTATG GGAGGGTTGATGCGACTTATGAATTGGTTGCCTTACTGTATTTTTTGCTC GCAATGCTGATCATGTTTCCCCGGCAGCTGATTACATCCAACCACCATCA AGGCACGCACGAACAGGGGGATGTGCCACCTCAAAGGGGCAGCTGCGCGG GCCCAGTATGATCGCCATCTTGCTGGGACGATGCCAACAAAAGAAGGCGA CTGATCCAATCCCTTTGCTCTGACGATAAACCTAACCCCGCTCTCCCGCA TACCTACAACATACAGGGAATCAAGCTAGTGGGCCCTTAAGCGAGGTAGC TGCTTGCCTGCTCTCCCGCACGCGCCCATCCTCTTGGATCAAGAACATTC TGTTTCTGTTCCGCCCCGCCGCCGAAATAAAGCGCTAGCATTCCCAGGAC ATCAGCACCTGCACCAAGAGCACCTCCAGCCTCAACAGCAATAATATCAT GTCGGCGCCCAAGAAAACTAAGCACGTGGACCAGTTCACGGCTCTCGGGG AACTCACCACCTTGGTGTGTGACACGGGCGACGTCGAGGCCATCAAGCGT CTCAAGCCCACGGATGCCACCACCAATCCCTCCCTCATCTACAAAGCGGC CTCGCAACCCCAATACCTGCCTCTCGTCCAAGACGCGGTCGCGTACGGGA AGGCCCTCTCTGCCTCCAAGTCCGATTCGGAGCGTCTGGCGGCGACTATG GATCGATTGGCGGTGAATTTTGGGGCAGAAATTACGAAGATCGTTCCTGG GTATGTGAGCACTGAGGTGGACGCGCGGTTGAGCTACGACACGGGCGAGA CTTTGAAGAGGGGTCGACGCATTATTGAAATGTATAAAGAACTTGGAATC GACAAAAGCCGGATTCTGATTAAGATTGCCTCGACCTGGGAGGGGATCAA GGCGGCCGAGGTGCTGGAGAAGGAGGGCGTAGCCACAAACCTTACTCTGC TCTTTAGTCTCGCGCAAGCCGCTGCGGCGGCAGAAGCGGGTGCAACGCTG ATTTCACCGTTTGTGGGGCGTATTCTGGATTGGTGGAAAAAGGAAACGGG CAAGGGGTACGCGGATCCGGAGGAGGATCCGGGCGTGCAGTCTGTGCGGC AAATTTATGGGTATTATAAGAAGTTTGGATACGACACTATTGTAATGGGG GCGTCGTTTCGCAACAAGGGGGAGATTACGGCGTTGGCAGGGTGTGACCG GTTGACGATCTCTCCGGGCCTGCTCGACGAGCTCAAGGAGTGCCATGAGC CCCTCCCTCGTGTTTTGGACCCGAGGAGCGGCTCTTCCTTTTATGAGGGT GAGACGATCCCTGTAGACGAAAAGGCCTTCCGTCTAGCCCTGAATAACGA CCCCATGGCCACTGCCAAGCTTGCCGAAGGCATTAGGGGATTTGCCGCTG ACATTGAAAAACTCGAAGCAATGATTGCCAAGATGCTAGTCCCGCCCCCC GATCAGCTCAGTCAACTCGCGGCCTTCACCACCATAGTCTGTGATACGGG GGACGTGGAGACCATCGGCCGACTTAAACCCACAGATGCCACCACCAATC CCTCCCTCATCTTCAAAGCGGCCTCCCTCCCTCAATATCAACCCCTGGTT GACTCGGCGATCGCTGCCGCCAAGGCCGTGGCGGACGCGGGGATGAGCCA AAAGGAGCGGCTTGATTTGATTCTAGACCGTCTAGCCGTAAATTTTGGAG CGGAAATCACCAAGATCGTTCCTGGGTATGTGAGTACCGAGGTGGACGCG CGGTTGAGCTACGACACTGAGCAGACCTTGGCGAGGGCTAAGAGGATTGT GGGGATGTACAAAGACTTGGGCATCGACAAAAGCCGGATTCTGATTAAGA TTGCTTCGACCTGGGAGGGGATCAAGGCGGCCGAGGTGCTGGAGAAGGAG GGGGTGAAGACAAATTTGACCCTCTTGTTCTCCTTGGCCCAGGCAGTGGC AGCGGCAGAAGCGGGTGCAACGCTGATCTCACCGTTTGTGGGGCGTATTC TGGATTGGTGGAAAAAGGAAACGGGCAAGAGGTACGCGGATCTGGAGGAG GATCCGGGCGTGCAGTCTGTGCGGCAAATTTATGGGTATTATAAGAAGTT TGGATACGACACTATTGTAATGGGGGCGTCGTTTCGCAACAAGGGGGAGA TTACGGCGTTGGCAGGGTGTGACCGGTTGACGATCTCTCCGGGGCTGTTG GATGAGTTAAAGGCCTGTTGTGATCCGTTACCGCGAATGTTAGAGCCGAG TAAGGCTGCGGCAGTGTATGGCGGGCCGAAGCTGCGGGTGGATGAAAAGG CGTTCCGGCTCATGATGAATGGGGATGCCATGGCCACGGATAAGTTGGCG GAGGGGATTAGGGGCTTTGCAGCGGATATTGAGAAGTTGGAGGCAATGAT TGCCAAGAAGCTCTGAGTGTTATAGTTGGCGAAATGGAGGTAGAGAAGGA GGGAGGAACTTCGCGTTAGCTGCAAAGAGAGAGTTGGTACGAAAACTAAG ACCAGAGATTGGGCGAAAACTAATAGTGATGTAGACAGTCAGGGAGAACG GAAAAGCGTATTATATAAGAGGGAAGACAGGGAGTGTAAAAGAGGTGTAA GAGGGATAGAAGACGTGGGAGTGGGGTTTCAGTGCCATCTCACTCGTAGA AACAAGCAAGCCCCAGCCTAGCCCAGCTAAAAGATGTGCTCCAAGAAAAG GTGGCAAGGTATAAAATTGTGGGGTTTTGTACTCAATGAAGATCACAAGC ACATGCTCAGCCAATGGAAGTGAATTAAGAAGTGAAACCCTGATGACCAT TTTTTAGGATAGAGAAGGAATAATACCTGAGGTTGCAGAAA back to topprotein sequence of NO03G04370.1 >NO03G04370.1-protein ID=NO03G04370.1-protein|Name=NO03G04370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp MSAPKKTKHVDQFTALGELTTLVCDTGDVEAIKRLKPTDATTNPSLIYKA ASQPQYLPLVQDAVAYGKALSASKSDSERLAATMDRLAVNFGAEITKIVP GYVSTEVDARLSYDTGETLKRGRRIIEMYKELGIDKSRILIKIASTWEGI KAAEVLEKEGVATNLTLLFSLAQAAAAAEAGATLISPFVGRILDWWKKET GKGYADPEEDPGVQSVRQIYGYYKKFGYDTIVMGASFRNKGEITALAGCD RLTISPGLLDELKECHEPLPRVLDPRSGSSFYEGETIPVDEKAFRLALNN DPMATAKLAEGIRGFAADIEKLEAMIAKMLVPPPDQLSQLAAFTTIVCDT GDVETIGRLKPTDATTNPSLIFKAASLPQYQPLVDSAIAAAKAVADAGMS QKERLDLILDRLAVNFGAEITKIVPGYVSTEVDARLSYDTEQTLARAKRI VGMYKDLGIDKSRILIKIASTWEGIKAAEVLEKEGVKTNLTLLFSLAQAV AAAEAGATLISPFVGRILDWWKKETGKRYADLEEDPGVQSVRQIYGYYKK FGYDTIVMGASFRNKGEITALAGCDRLTISPGLLDELKACCDPLPRMLEP SKAAAVYGGPKLRVDEKAFRLMMNGDAMATDKLAEGIRGFAADIEKLEAM IAKKL* back to topmRNA from alignment at chr3:1260065..1262955+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G04370.1 ID=NO03G04370.1|Name=NO03G04370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2891bp|location=Sequence derived from alignment at chr3:1260065..1262955+ (Nannochloropsis oceanica) CGACGCCGCAAGCTCCCGGTCGTTTTGCGTGTTAATTGGTGGATCTTATG
GGAGGGTTGATGCGACTTATGAATTGGTTGCCTTACTGTATTTTTTGCTC
GCAATGCTGATCATGTTTCCCCGGCAGCTGATTACATCCAACCACCATCA
AGGCACGCACGAACAGGGGGATGTGCCACCTCAAAGGGGCAGCTGCGCGG
GCCCAGTATGATCGCCATCTTGCTGGGACGATGCCAACAAAAGAAGGCGA
CTGATCCAATCCCTTTGCTCTGACGATAAACCTAACCCCGCTCTCCCGCA
TACCTACAACATACAGGGAATCAAGCTAGTGGGCCCTTAAGCGAGGTAGC
TGCTTGCCTGCTCTCCCGCACGCGCCCATCCTCTTGGATCAAGAACATTC
TGTTTCTGTTCCGCCCCGCCGCCGAAATAAAGCGCTAGCATTCCCAGGAC
ATCAGCACCTGCACCAAGAGCACCTCCAGCCTCAACAGCAATAATATCAT
GTCGGCGCCCAAGAAAACTAAGCACGTGGACCAGTTCACGGCTCTCGGGG
AACTCACCACCTTGGTGTGTGACACGGGCGACGTCGAGGCCATCAAGCGT
CTCAAGCCCACGGATGCCACCACCAATCCCTCCCTCATCTACAAAGCGGC
CTCGCAACCCCAATACCTGCCTCTCGTCCAAGACGCGGTCGCGTACGGGA
AGGCCCTCTCTGCCTCCAAGTCCGATTCGGAGCGTCTGGCGGCGACTATG
GATCGATTGGCGGTGAATTTTGGGGCAGAAATTACGAAGATCGTTCCTGG
GTATGTGAGCACTGAGGTGGACGCGCGGTTGAGCTACGACACGGGCGAGA
CTTTGAAGAGGGGTCGACGCATTATTGAAATGTATAAAGAACTTGGAATC
GACAAAAGCCGGATTCTGATTAAGATTGCCTCGACCTGGGAGGGGATCAA
GGCGGCCGAGGTGCTGGAGAAGGAGGGCGTAGCCACAAACCTTACTCTGC
TCTTTAGTCTCGCGCAAGCCGCTGCGGCGGCAGAAGCGGGTGCAACGCTG
ATTTCACCGTTTGTGGGGCGTATTCTGGATTGGTGGAAAAAGGAAACGGG
CAAGGGGTACGCGGATCCGGAGGAGGATCCGGGCGTGCAGTCTGTGCGGC
AAATTTATGGGTATTATAAGAAGTTTGGATACGACACTATTGTAATGGGG
GCGTCGTTTCGCAACAAGGGGGAGATTACGGCGTTGGCAGGGTGTGACCG
GTTGACGATCTCTCCGGGCCTGCTCGACGAGCTCAAGGAGTGCCATGAGC
CCCTCCCTCGTGTTTTGGACCCGAGGAGCGGCTCTTCCTTTTATGAGGGT
GAGACGATCCCTGTAGACGAAAAGGCCTTCCGTCTAGCCCTGAATAACGA
CCCCATGGCCACTGCCAAGCTTGCCGAAGGCATTAGGGGATTTGCCGCTG
ACATTGAAAAACTCGAAGCAATGATTGCCAAGATGCTAGTCCCGCCCCCC
GATCAGCTCAGTCAACTCGCGGCCTTCACCACCATAGTCTGTGATACGGG
GGACGTGGAGACCATCGGCCGACTTAAACCCACAGATGCCACCACCAATC
CCTCCCTCATCTTCAAAGCGGCCTCCCTCCCTCAATATCAACCCCTGGTT
GACTCGGCGATCGCTGCCGCCAAGGCCGTGGCGGACGCGGGGATGAGCCA
AAAGGAGCGGCTTGATTTGATTCTAGACCGTCTAGCCGTAAATTTTGGAG
CGGAAATCACCAAGATCGTTCCTGGGTATGTGAGTACCGAGGTGGACGCG
CGGTTGAGCTACGACACTGAGCAGACCTTGGCGAGGGCTAAGAGGATTGT
GGGGATGTACAAAGACTTGGGCATCGACAAAAGCCGGATTCTGATTAAGA
TTGCTTCGACCTGGGAGGGGATCAAGGCGGCCGAGGTGCTGGAGAAGGAG
GGGGTGAAGACAAATTTGACCCTCTTGTTCTCCTTGGCCCAGGCAGTGGC
AGCGGCAGAAGCGGGTGCAACGCTGATCTCACCGTTTGTGGGGCGTATTC
TGGATTGGTGGAAAAAGGAAACGGGCAAGAGGTACGCGGATCTGGAGGAG
GATCCGGGCGTGCAGTCTGTGCGGCAAATTTATGGGTATTATAAGAAGTT
TGGATACGACACTATTGTAATGGGGGCGTCGTTTCGCAACAAGGGGGAGA
TTACGGCGTTGGCAGGGTGTGACCGGTTGACGATCTCTCCGGGGCTGTTG
GATGAGTTAAAGGCCTGTTGTGATCCGTTACCGCGAATGTTAGAGCCGAG
TAAGGCTGCGGCAGTGTATGGCGGGCCGAAGCTGCGGGTGGATGAAAAGG
CGTTCCGGCTCATGATGAATGGGGATGCCATGGCCACGGATAAGTTGGCG
GAGGGGATTAGGGGCTTTGCAGCGGATATTGAGAAGTTGGAGGCAATGAT
TGCCAAGAAGCTCTGAGTGTTATAGTTGGCGAAATGGAGGTAGAGAAGGA
GGGAGGAACTTCGCGTTAGCTGCAAAGAGAGAGTTGGTACGAAAACTAAG
ACCAGAGATTGGGCGAAAACTAATAGTGATGTAGACAGTCAGGGAGAACG
GAAAAGCGTATTATATAAGAGGGAAGACAGGGAGTGTAAAAGAGGTGTAA
GAGGGATAGAAGACGTGGGAGTGGGGTTTCAGTGCCATCTCACTCGTAGA
AACAAGCAAGCCCCAGCCTAGCCCAGCTAAAAGATGTGCTCCAAGAAAAG
GTGGCAAGGTATAAAATTGTGGGGTTTTGTACTCAATGAAGATCACAAGC
ACATGCTCAGCCAATGGAAGTGAATTAAGAAGTGAAACCCTGATGACCAT
TTTTTAGGATAGAGAAGGAATAATACCTGAGGTTGCAGAAA back to topCoding sequence (CDS) from alignment at chr3:1260065..1262955+ >NO03G04370.1 ID=NO03G04370.1|Name=NO03G04370.1|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at chr3:1260065..1262955+ (Nannochloropsis oceanica) ATGTCGGCGCCCAAGAAAACTAAGCACGTGGACCAGTTCACGGCTCTCGG GGAACTCACCACCTTGGTGTGTGACACGGGCGACGTCGAGGCCATCAAGC GTCTCAAGCCCACGGATGCCACCACCAATCCCTCCCTCATCTACAAAGCG GCCTCGCAACCCCAATACCTGCCTCTCGTCCAAGACGCGGTCGCGTACGG GAAGGCCCTCTCTGCCTCCAAGTCCGATTCGGAGCGTCTGGCGGCGACTA TGGATCGATTGGCGGTGAATTTTGGGGCAGAAATTACGAAGATCGTTCCT GGGTATGTGAGCACTGAGGTGGACGCGCGGTTGAGCTACGACACGGGCGA GACTTTGAAGAGGGGTCGACGCATTATTGAAATGTATAAAGAACTTGGAA TCGACAAAAGCCGGATTCTGATTAAGATTGCCTCGACCTGGGAGGGGATC AAGGCGGCCGAGGTGCTGGAGAAGGAGGGCGTAGCCACAAACCTTACTCT GCTCTTTAGTCTCGCGCAAGCCGCTGCGGCGGCAGAAGCGGGTGCAACGC TGATTTCACCGTTTGTGGGGCGTATTCTGGATTGGTGGAAAAAGGAAACG GGCAAGGGGTACGCGGATCCGGAGGAGGATCCGGGCGTGCAGTCTGTGCG GCAAATTTATGGGTATTATAAGAAGTTTGGATACGACACTATTGTAATGG GGGCGTCGTTTCGCAACAAGGGGGAGATTACGGCGTTGGCAGGGTGTGAC CGGTTGACGATCTCTCCGGGCCTGCTCGACGAGCTCAAGGAGTGCCATGA GCCCCTCCCTCGTGTTTTGGACCCGAGGAGCGGCTCTTCCTTTTATGAGG GTGAGACGATCCCTGTAGACGAAAAGGCCTTCCGTCTAGCCCTGAATAAC GACCCCATGGCCACTGCCAAGCTTGCCGAAGGCATTAGGGGATTTGCCGC TGACATTGAAAAACTCGAAGCAATGATTGCCAAGATGCTAGTCCCGCCCC CCGATCAGCTCAGTCAACTCGCGGCCTTCACCACCATAGTCTGTGATACG GGGGACGTGGAGACCATCGGCCGACTTAAACCCACAGATGCCACCACCAA TCCCTCCCTCATCTTCAAAGCGGCCTCCCTCCCTCAATATCAACCCCTGG TTGACTCGGCGATCGCTGCCGCCAAGGCCGTGGCGGACGCGGGGATGAGC CAAAAGGAGCGGCTTGATTTGATTCTAGACCGTCTAGCCGTAAATTTTGG AGCGGAAATCACCAAGATCGTTCCTGGGTATGTGAGTACCGAGGTGGACG CGCGGTTGAGCTACGACACTGAGCAGACCTTGGCGAGGGCTAAGAGGATT GTGGGGATGTACAAAGACTTGGGCATCGACAAAAGCCGGATTCTGATTAA GATTGCTTCGACCTGGGAGGGGATCAAGGCGGCCGAGGTGCTGGAGAAGG AGGGGGTGAAGACAAATTTGACCCTCTTGTTCTCCTTGGCCCAGGCAGTG GCAGCGGCAGAAGCGGGTGCAACGCTGATCTCACCGTTTGTGGGGCGTAT TCTGGATTGGTGGAAAAAGGAAACGGGCAAGAGGTACGCGGATCTGGAGG AGGATCCGGGCGTGCAGTCTGTGCGGCAAATTTATGGGTATTATAAGAAG TTTGGATACGACACTATTGTAATGGGGGCGTCGTTTCGCAACAAGGGGGA GATTACGGCGTTGGCAGGGTGTGACCGGTTGACGATCTCTCCGGGGCTGT TGGATGAGTTAAAGGCCTGTTGTGATCCGTTACCGCGAATGTTAGAGCCG AGTAAGGCTGCGGCAGTGTATGGCGGGCCGAAGCTGCGGGTGGATGAAAA GGCGTTCCGGCTCATGATGAATGGGGATGCCATGGCCACGGATAAGTTGG CGGAGGGGATTAGGGGCTTTGCAGCGGATATTGAGAAGTTGGAGGCAATG ATTGCCAAGAAGCTCTGA back to top
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