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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1174074..1177452 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G04030.1 vs.
Match: EWM29868.1 (hemolysin iii [Nannochloropsis gaditana]) HSP 1 Score: 706.8 bits (1823), Expect = 4.900e-200 Identity = 363/463 (78.40%), Postives = 399/463 (86.18%), Query Frame = 0
Query: 65 VATTAMGDASAASVHLLPPKANGASGAASAS--SAGASSPSPSALLPIPCSHSSHGNAEGDEDTTHYIQNCLHYHMAIDPSVVITLRTRWSVMQPTKSFCEGSLLPLAGILDHNKFIRRLHLSGTGMTNVKAGAGNGDSNARILHQVLANNNCIETLDISNTGIDDSGLAEVCEGMKKNAAVTTLNVARNCFSAKGALFLEAMLESNISLKYLDISRNALGFNCISRLQCCAKAKNVEMNVEGNYVFEEILNSLTHGLGFIASVVGTILLMSAASAPGTTPYHWWSCLLFSLSLMILYISSSLYHSMFMLPHAKDILQVMDHVGIYLLIAGSYSPFMMIALHHSPRANVLLLLEWVTAGGGVCVSIASSGVGVSKQETNLVEVAIFLVMGCAAFAVWSDLVISLPETALHMLVGGGMAYIFGVIFFILGEIKPIYHMVWHLCVMLGSVLHWLCVYHFVVGIDM 526
+A M D S LLP + + +G S S SAG SP SAL+PIP +H G+AEGD DT YI NCLHY+MAIDPSVVITLRTRW+ MQPTKSFCEGSLLPLAGILD NKFIRRLHLSG G+TNVKA AGNGDSNARILHQVL +N+ I LDISNTGIDDSGLAEVC+GM N+AVTTLNVARNCFSA+GAL LE ML+ N LKYLD+SRNALGF CI+RLQCCAK +NVEM VEGNYVFEEILNSLTHGLGFIASVVGT+LLMSAASAPGTTPYHWWSCLLFSLSLM+LYISSSLYHS FMLPHAKD+LQ++DHVGIYLLIAGSYSP MMIALHHS RAN+LLLLEW+TA GG+CVSIASSGVGVS Q TNLVEV IFL MGCAAF +W DLV +LP TAL++LVGGGMAYI GV+FFILGEIKPIYHMVWH+ VMLGS+LHWLCVYHFVVG+ +
Sbjct: 35 MAADIMNDVEPTSA-LLPTQPSTRNGPPSDSPPSAGKLSPFSSALVPIPRNHIDSGDAEGDCDTAQYIINCLHYNMAIDPSVVITLRTRWATMQPTKSFCEGSLLPLAGILDRNKFIRRLHLSGAGVTNVKATAGNGDSNARILHQVLLSNDSINILDISNTGIDDSGLAEVCQGMAVNSAVTTLNVARNCFSAQGALMLEDMLQKNTRLKYLDVSRNALGFKCINRLQCCAKLRNVEMRVEGNYVFEEILNSLTHGLGFIASVVGTLLLMSAASAPGTTPYHWWSCLLFSLSLMMLYISSSLYHSFFMLPHAKDVLQILDHVGIYLLIAGSYSPIMMIALHHSHRANLLLLLEWLTAFGGICVSIASSGVGVSNQATNLVEVFIFLGMGCAAFGIWDDLVANLPATALYLLVGGGMAYIIGVVFFILGEIKPIYHMVWHMFVMLGSLLHWLCVYHFVVGMGL 496
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G04030.1 ID=NO03G04030.1|Name=NO03G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2910bp GCGGCTGCTTTTTCTTGATTCTGTGGATCATATGTTTTGAGAGAGTCGAA TCATGAAAGCGAAAACAAAAGGGAACGAGACACACAAAATTAAAGGCAAC CATGAAGGCCTTGCTCGGAGTCACAGCTTGCAGTAATTATGTCTTTTTTG GGAGGCGCGAGCAGGGACATATCGGCACGCATTGTTCAAGCCGTCGGAGT TAGAGCGCCTCGCCCATACATGAGCGACGAGATGGCCTTTTGCAGTACGA AACTAGGTGCACAAGAGTATCGATTATAATTAAAACAAGAGTATTGATTA AAACATTAAGAGCTGTGGAGTCAGCAATATCCCGTGATGTCCTCCCCTCC CCTGCATGGATACGCCTCCTTCTCTGCCATGCAGGCCGATAATAAATAAA AAAGGGTATTATCCCAGTAGCGCTAAGAATGAACCTCTAGTAGGCATCGG CATATCAATCAATGGAGATTGTATTGCTACGTCATTCCTATTTACTTCCC ACACAGAGCAGTACATGAATCCAGCCTAAAGCTAAAACCGCCATCAGCCG TCGATAGTGGCTCTCTGGCTTGCAAAGTGCGGCAGCTCTGGATGTTCTCC TCTCCCATTTCATAAGCATAATGTGTACGTAGCAGCTTGATGGGCAAGGG TTGTATCGTATGCCACTCTTCTATAGCCAATTTCTTTTTCCACATGGGTT TATATTTATGGTACCTTTGCAGAGGAGGTTGAGTAGATGAGCCGGGCAGC AACAGCAAGCAAGAGCAGAGTGTCATCGACGGTGAGAAAGCAGTGAAGTA TGAGGAGGGATAAGGATGCCTTGCTTGCTATGCTCCAATGCTATGCTCCG ATACTGTGTGCTTCCACAGCTGCTCATATTCCTTTCGCTGGCGGAGTTGG TCACCACGCATGCATGCTTGACTTCGCAAACTTTCAGGCCGTGCCAGTGT TGGCTAAACACGACTACGTGATTTTCCCCGTATAGTCAGTGGTCGCGGAG GTTTTGCATCGGCTGTTGGTGGAGACGTTGCGCTACCGGTTGTTTCGTTG CGGTGAAGGGGGTAAGGTATTAGGATATGGGACCAATTTTCTCTGCATTC TGTGCTACGGGTGGAGAGATTTCTCATTCTTTCGTCGCGCTTATAACATA TCAATGTAATGACTAATATACTTACATACATGAAGGGGGAAAAGAGGTGT GGTTACTGGAGACATGTTTTTTTGGCTGGTTGTGGTGGGAGGTTTTAATT TATATATTATATATGTATAAAAATTATAATAATATTCCCGAGCCTTACAC CGGCATCTCGCGCCTATCCTCTAATGTTCTGCCCTACGCCATTTGTGTTG TCGTCACATTTGTGGCAACCCTATGGGCCCCGGATTGTGTTGAAGCGACG GTTGTTGCAGAAGCATCATGTAACATTCACATCTACCCGCGTTCCGCGCA AGCCCTGTACAAACCACCACCACATCATCATCATTCCCATCCACCTGCGC CGCTTCAAAAGGCGCGTGGCAACGACAGCGATGGGGGATGCCTCGGCGGC CAGCGTGCATCTTCTGCCTCCCAAAGCGAACGGCGCCTCGGGCGCTGCTT CTGCCTCCTCTGCTGGGGCATCCTCGCCGTCGCCCTCCGCCCTGTTGCCC ATTCCTTGCAGTCACAGCAGCCATGGGAATGCAGAGGGCGACGAGGACAC GACGCACTACATCCAAAACTGCCTCCACTACCACATGGCCATCGACCCCT CCGTCGTCATCACTCTCCGTACCCGCTGGTCAGTCATGCAGCCCACCAAG AGTTTTTGCGAAGGATCCCTTCTTCCCCTCGCTGGTATTTTAGACCACAA CAAATTTATCCGTCGCCTTCATCTGAGTGGCACCGGCATGACCAACGTGA AAGCCGGTGCCGGTAACGGTGATAGCAACGCGCGGATTTTGCATCAAGTC CTCGCGAATAATAATTGTATCGAAACATTAGATATTAGCAACACGGGAAT AGACGACTCAGGATTGGCGGAAGTGTGTGAAGGGATGAAGAAGAACGCGG CGGTCACTACGCTGAATGTGGCGAGGAATTGCTTCTCGGCCAAGGGGGCC TTGTTTTTGGAGGCGATGCTTGAGAGCAACATATCACTTAAATATCTAGA CATATCCCGGAACGCGCTGGGTTTCAATTGCATTAGTAGGCTGCAGTGCT GCGCCAAGGCCAAAAACGTGGAAATGAATGTGGAGGGAAACTACGTTTTT GAAGAAATCCTCAACAGTCTCACACACGGCCTTGGCTTCATTGCGTCTGT CGTGGGCACCATCCTACTCATGTCTGCTGCCTCGGCGCCCGGCACCACCC CTTACCACTGGTGGTCCTGCCTGCTCTTCTCCCTCTCCCTGATGATCTTG TACATATCCTCCTCCCTCTATCACTCCATGTTTATGCTCCCACACGCTAA GGACATATTGCAAGTTATGGACCACGTGGGGATCTACTTGCTCATCGCCG GCTCGTATTCCCCCTTCATGATGATCGCCCTCCACCACTCCCCCCGGGCC AACGTTCTCTTGCTCCTGGAGTGGGTCACGGCCGGTGGCGGGGTATGTGT GTCTATCGCAAGCTCGGGGGTGGGTGTGTCGAAGCAAGAAACCAATTTGG TGGAAGTGGCCATATTTCTGGTGATGGGTTGTGCGGCGTTTGCGGTCTGG AGCGACCTTGTGATTTCCTTGCCCGAGACAGCGCTGCATATGTTGGTTGG AGGGGGAATGGCTTATATATTTGGAGTCATCTTCTTTATTTTGGGTGAAA TTAAGCCAATCTATCATATGGTTTGGCATTTATGCGTCATGCTTGGGAGT GTATTGCACTGGTTGTGTGTCTACCATTTTGTGGTGGGCATTGATATGGG GTAAGGGAAA back to topprotein sequence of NO03G04030.1 >NO03G04030.1-protein ID=NO03G04030.1-protein|Name=NO03G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp MFCPTPFVLSSHLWQPYGPRIVLKRRLLQKHHVTFTSTRVPRKPCTNHHH IIIIPIHLRRFKRRVATTAMGDASAASVHLLPPKANGASGAASASSAGAS SPSPSALLPIPCSHSSHGNAEGDEDTTHYIQNCLHYHMAIDPSVVITLRT RWSVMQPTKSFCEGSLLPLAGILDHNKFIRRLHLSGTGMTNVKAGAGNGD SNARILHQVLANNNCIETLDISNTGIDDSGLAEVCEGMKKNAAVTTLNVA RNCFSAKGALFLEAMLESNISLKYLDISRNALGFNCISRLQCCAKAKNVE MNVEGNYVFEEILNSLTHGLGFIASVVGTILLMSAASAPGTTPYHWWSCL LFSLSLMILYISSSLYHSMFMLPHAKDILQVMDHVGIYLLIAGSYSPFMM IALHHSPRANVLLLLEWVTAGGGVCVSIASSGVGVSKQETNLVEVAIFLV MGCAAFAVWSDLVISLPETALHMLVGGGMAYIFGVIFFILGEIKPIYHMV WHLCVMLGSVLHWLCVYHFVVGIDMG* back to topmRNA from alignment at chr3:1174074..1177452- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G04030.1 ID=NO03G04030.1|Name=NO03G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3379bp|location=Sequence derived from alignment at chr3:1174074..1177452- (Nannochloropsis oceanica) GCGGCTGCTTTTTCTTGATTCTGTGGATCATATGTTTTGAGAGAGTCGAA
TCATGAAAGCGAAAACAAAAGGGAACGAGACACACAAAATTAAAGGCAAC
CATGAAGGCCTTGCTCGGAGTCACAGCTTGCAGTAATTATGTCTTTTTTG
GGAGGCGCGAGCAGGGACATATCGGCACGCATTGTTCAAGCCGTCGGAGT
TAGAGCGCCTCGCCCATACATGAGCGACGAGATGGCCTTTTGCAGTACGA
AACTAGGTGCACAAGAGTATCGATTATAATTAAAACAAGAGTATTGATTA
AAACATTAAGAGCTGTGGAGTCAGCAATATCCCGTGATGTCCTCCCCTCC
CCTGCATGGATACGCCTCCTTCTCTGCCATGCAGGCCGATAATAAATAAA
AAAGGGTATTATCCCAGTAGCGCTAAGAATGAACCTCTAGTAGGCATCGG
CATATCAATCAATGGAGATTGTATTGCTACGTCATTCCTATTTACTTCCC
ACACAGAGCAGTACATGAATCCAGCCTAAAGCTAAAACCGCCATCAGCCG
TCGATAGTGGCTCTCTGGCTTGCAAAGTGCGGCAGCTCTGGATGTTCTCC
TCTCCCATTTCATAAGCATAATGTGTACGTAGCAGCTTGATGGGCAAGGG
TTGTATCGTATGCCACTCTTCTATAGCCAATTTCTTTTTCCACATGGGTT
TATATTTATGGTACCTTTGCAGAGGAGGTTGAGTAGATGAGCCGGGCAGC
AACAGCAAGCAAGAGCAGAGTGTCATCGACGGTGAGAAAGCAGTGAAGTA
TGAGGAGGGATAAGGATGCCTTGCTTGCTATGCTCCAATGCTATGCTCCG
ATACTGTGTGCTTCCACAGCTGCTCATATTCCTTTCGCTGGCGGAGTTGG
TCACCACGCATGCATGCTTGACTTCGCAAACTTTCAGGCCGTGCCAGTGT
TGGCTAAACACGACTACGTGATTTTCCCCGTATAGTCAGTGGTCGCGGAG
GTTTTGCATCGGCTGTTGGTGGAGACGTTGCGCTACCGGTTGTTTCGTTG
CGGTGAAGGGGGTAAGGTATTAGGATATGGGACCAATTTTCTCTGCATTC
TGTGCTACGGGTGGAGAGATTTCTCATTCTTTCGTCGCGCTTATAACATA
TCAATGTAATGACTAATATACTTACATACATGAAGGGGGAAAAGAGGTGT
GGTTACTGGAGACATGTTTTTTTGGCTGGTTGTGGTGGGAGGTTTTAATT
TATATATTATATATGTATAAAAATTATAATAATATTCCCGAGCCTTACAC
CGGCATCTCGCGCCTATCCTCTAATGTTCTGCCCTACGCCATTTGTGTTG
TCGTCACATTTGTGGCAACCCTATGGGCCCCGGATTGTGTTGAAGCGACG
GTTGTTGCAGAAGCATCATGTAACATTCACATCTACCCGCGTTCCGCGCA
AGCCCTGTACAAACCACCACCACATCATCATCATTCCCATCCACCTGCGC
CGCTTCAAAAGGCGCGTGGCAACGACAGCGATGGGGGATGCCTCGGCGGC
CAGCGTGCATCTTCTGCCTCCCAAAGCGAACGGCGCCTCGGGCGCTGCTT
CTGCCTCCTCTGCTGGGGCATCCTCGCCGTCGCCCTCCGCCCTGTTGCCC
ATTCCTTGCAGTCACAGCAGCCATGGGAATGCAGAGGTAAGATGCATTGT
CAATAGTTTAGAGGGGTGCAGCTCAGGTCATGTGACACCGCGCTAATAAT
AATCCGGCGAGGCCGGCGTGTATGTCCCCCCTCCCTCGTCTCCCTCCTCC
TAGCCTCCCCATAGCATGGAAAGCTGTTTGGTTCGACAAAGTGCACAAAC
GTATATCACCTTCTCATTATTGTGCCAAATTTATTTGCTACTTTCCTCCT
GCCCCCCTCCCCCCCTCTCTATCAGGGCGACGAGGACACGACGCACTACA
TCCAAAACTGCCTCCACTACCACATGGCCATCGACCCCTCCGTCGTCATC
ACTCTCCGTACCCGCTGGTCAGTCATGCAGCCCACCAAGAGTTTTTGCGA
AGGATCCCTTCTTCCCCTCGCTGGTATTTTAGACCACAACAAATTTATCC
GTCGCCTTCATCTGAGTGGCACCGGCATGACCAACGTGAAAGCCGGTGCC
GGTAACGGTGATAGCAACGCGCGGATTTTGCATCAAGTCCTCGCGAATAA
TAATTGTATCGAAACATTAGATATTAGCAACACGGGAATAGACGACTCAG
GATTGGCGGAAGTGTGTGAAGGGATGAAGAAGAACGCGGCGGTCACTACG
CTGAATGTGGCGAGGAATTGCTTCTCGGCCAAGGGGGCCTTGTTTTTGGA
GGCGATGCTTGAGAGCAACATATCACTTAAATATCTAGGTAAGTTGACGC
TGTGATGAATTGATAATTAGGTGCGATGGAGCGGAAGGACGGTGGAGTTT
CATGGGGTCGTCGTTTGTCTGAAATCTGCCTCCTGTCCCCCGTCCATCTT
GTAGACATATCCCGGAACGCGCTGGGTTTCAATTGCATTAGTAGGCTGCA
GTGCTGCGCCAAGGCCAAAAACGTGGAAATGAATGTGGAGGGTAAGTACG
AGAATCAGGGCGAAAGGGAAGGAGAAAGTATAAGTGTTTGCCTGAGTAAG
CATCTGACCCTCTAATCCCTCCCTGTCTCTCTGTCACTCCCCTTGCCGTT
CGCAGGAAACTACGTTTTTGAAGAAATCCTCAACAGTCTCACACACGGCC
TTGGCTTCATTGCGTCTGTCGTGGGCACCATCCTACTCATGTCTGCTGCC
TCGGCGCCCGGCACCACCCCTTACCACTGGTGGTCCTGCCTGCTCTTCTC
CCTCTCCCTGATGATCTTGTACATATCCTCCTCCCTCTATCACTCCATGT
TTATGCTCCCACACGCTAAGGACATATTGCAAGTTATGGACCACGTGGGG
ATCTACTTGCTCATCGCCGGCTCGTATTCCCCCTTCATGATGATCGCCCT
CCACCACTCCCCCCGGGCCAACGTTCTCTTGCTCCTGGAGTGGGTCACGG
CCGGTGGCGGGGTATGTGTGTCTATCGCAAGCTCGGGGGTGGGTGTGTCG
AAGCAAGAAACCAATTTGGTGGAAGTGGCCATATTTCTGGTGATGGGTTG
TGCGGCGTTTGCGGTCTGGAGCGACCTTGTGATTTCCTTGCCCGAGACAG
CGCTGCATATGTTGGTTGGAGGGGGAATGGCTTATATATTTGGAGTCATC
TTCTTTATTTTGGGTGAAATTAAGCCAATCTATCATATGGTTTGGCATTT
ATGCGTCATGCTTGGGAGTGTATTGCACTGGTTGTGTGTCTACCATTTTG
TGGTGGGCATTGATATGGGGTAAGGGAAA back to topCoding sequence (CDS) from alignment at chr3:1174074..1177452- >NO03G04030.1 ID=NO03G04030.1|Name=NO03G04030.1|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at chr3:1174074..1177452- (Nannochloropsis oceanica) ATGTTCTGCCCTACGCCATTTGTGTTGTCGTCACATTTGTGGCAACCCTA TGGGCCCCGGATTGTGTTGAAGCGACGGTTGTTGCAGAAGCATCATGTAA CATTCACATCTACCCGCGTTCCGCGCAAGCCCTGTACAAACCACCACCAC ATCATCATCATTCCCATCCACCTGCGCCGCTTCAAAAGGCGCGTGGCAAC GACAGCGATGGGGGATGCCTCGGCGGCCAGCGTGCATCTTCTGCCTCCCA AAGCGAACGGCGCCTCGGGCGCTGCTTCTGCCTCCTCTGCTGGGGCATCC TCGCCGTCGCCCTCCGCCCTGTTGCCCATTCCTTGCAGTCACAGCAGCCA TGGGAATGCAGAGGGCGACGAGGACACGACGCACTACATCCAAAACTGCC TCCACTACCACATGGCCATCGACCCCTCCGTCGTCATCACTCTCCGTACC CGCTGGTCAGTCATGCAGCCCACCAAGAGTTTTTGCGAAGGATCCCTTCT TCCCCTCGCTGGTATTTTAGACCACAACAAATTTATCCGTCGCCTTCATC TGAGTGGCACCGGCATGACCAACGTGAAAGCCGGTGCCGGTAACGGTGAT AGCAACGCGCGGATTTTGCATCAAGTCCTCGCGAATAATAATTGTATCGA AACATTAGATATTAGCAACACGGGAATAGACGACTCAGGATTGGCGGAAG TGTGTGAAGGGATGAAGAAGAACGCGGCGGTCACTACGCTGAATGTGGCG AGGAATTGCTTCTCGGCCAAGGGGGCCTTGTTTTTGGAGGCGATGCTTGA GAGCAACATATCACTTAAATATCTAGACATATCCCGGAACGCGCTGGGTT TCAATTGCATTAGTAGGCTGCAGTGCTGCGCCAAGGCCAAAAACGTGGAA ATGAATGTGGAGGGAAACTACGTTTTTGAAGAAATCCTCAACAGTCTCAC ACACGGCCTTGGCTTCATTGCGTCTGTCGTGGGCACCATCCTACTCATGT CTGCTGCCTCGGCGCCCGGCACCACCCCTTACCACTGGTGGTCCTGCCTG CTCTTCTCCCTCTCCCTGATGATCTTGTACATATCCTCCTCCCTCTATCA CTCCATGTTTATGCTCCCACACGCTAAGGACATATTGCAAGTTATGGACC ACGTGGGGATCTACTTGCTCATCGCCGGCTCGTATTCCCCCTTCATGATG ATCGCCCTCCACCACTCCCCCCGGGCCAACGTTCTCTTGCTCCTGGAGTG GGTCACGGCCGGTGGCGGGGTATGTGTGTCTATCGCAAGCTCGGGGGTGG GTGTGTCGAAGCAAGAAACCAATTTGGTGGAAGTGGCCATATTTCTGGTG ATGGGTTGTGCGGCGTTTGCGGTCTGGAGCGACCTTGTGATTTCCTTGCC CGAGACAGCGCTGCATATGTTGGTTGGAGGGGGAATGGCTTATATATTTG GAGTCATCTTCTTTATTTTGGGTGAAATTAAGCCAATCTATCATATGGTT TGGCATTTATGCGTCATGCTTGGGAGTGTATTGCACTGGTTGTGTGTCTA CCATTTTGTGGTGGGCATTGATATGGGGTAA back to top
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